View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7680_high_50 (Length: 207)
Name: NF7680_high_50
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7680_high_50 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 36 - 192
Target Start/End: Complemental strand, 3367471 - 3367317
Alignment:
| Q |
36 |
tattgtgttttgttatgtttaccatttaatctatcatatttggtggcttaatctttgtttttgaattatttggttctgtttgcagattcgccaatgactt |
135 |
Q |
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| T |
3367471 |
tattgtgttttgtt--gtttaccatttaatctaccatatttggtggcttaatctttgtttttgaattatttggttctgtttgcagatctgccaatgactt |
3367374 |
T |
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| Q |
136 |
caagcgtgattgatggcttgcaccaagatgggaacagtggcatctgaggtataaact |
192 |
Q |
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| T |
3367373 |
caagcgtgattgatggcttgcaccaagatgggaacagtggcatctgaggtataaact |
3367317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 36 - 192
Target Start/End: Complemental strand, 54188383 - 54188229
Alignment:
| Q |
36 |
tattgtgttttgttatgtttaccatttaatctatcatatttggtggcttaatctttgtttttgaattatttggttctgtttgcagattcgccaatgactt |
135 |
Q |
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| T |
54188383 |
tattgtgttttgtt--gtttaccatttaatctaccatatttggtggcttaatctttgtttttgaattatttggttctgtttgcagatctgccaatgactt |
54188286 |
T |
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| Q |
136 |
caagcgtgattgatggcttgcaccaagatgggaacagtggcatctgaggtataaact |
192 |
Q |
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| T |
54188285 |
taagtgtgattgatggcttgcaccaagatgggaacagtggcatctgaggtataaact |
54188229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 36 - 192
Target Start/End: Original strand, 8570795 - 8570939
Alignment:
| Q |
36 |
tattgtgttttgttatgtttaccatttaatctatcatatttggtggcttaatctttgtttttgaattatttggttctgtttgcagattcgccaatgactt |
135 |
Q |
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| T |
8570795 |
tattgtgttttgtt--gtttaccatttaatctaccatattaggtggcttaatctttgtttttgaattatttg----------cagatctgccaatgactt |
8570882 |
T |
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| Q |
136 |
caagcgtgattgatggcttgcaccaagatgggaacagtggcatctgaggtataaact |
192 |
Q |
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| T |
8570883 |
caagcgtgattgatggcttgcaccaagatgggaacagtggcatctgaggtataaact |
8570939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 5992046 - 5992093
Alignment:
| Q |
133 |
cttcaagcgtgattgatggcttgcaccaagatgggaacagtggcatct |
180 |
Q |
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| T |
5992046 |
cttcaagtgtgattgatggcttgcaccaagatcggagcagtagcatct |
5992093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 36 - 192
Target Start/End: Original strand, 28696755 - 28696899
Alignment:
| Q |
36 |
tattgtgttttgttatgtttaccatttaatctatcatatttggtggcttaatctttgtttttgaattatttggttctgtttgcagattcgccaatgactt |
135 |
Q |
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|||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
28696755 |
tattgtgttttgtt--gtttaccatttaatctaccatattaggtggcttaatctttgtttttgaattatttg----------cagatctgccaatgactt |
28696842 |
T |
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| Q |
136 |
caagcgtgattgatggcttgcaccaagatgggaacagtggcatctgaggtataaact |
192 |
Q |
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| T |
28696843 |
caagcgtgattgatggcttgcaccaagatgggaacagtggcatctgaggtataaact |
28696899 |
T |
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