View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7680_high_8 (Length: 619)

Name: NF7680_high_8
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7680_high_8
NF7680_high_8
[»] chr6 (1 HSPs)
chr6 (13-603)||(31523419-31524009)
[»] chr8 (13 HSPs)
chr8 (388-603)||(5316630-5316845)
chr8 (388-603)||(5279250-5279465)
chr8 (388-599)||(5309982-5310193)
chr8 (388-603)||(14946251-14946466)
chr8 (388-603)||(5286977-5287192)
chr8 (390-603)||(15128616-15128829)
chr8 (392-599)||(5347939-5348146)
chr8 (70-166)||(15128381-15128477)
chr8 (70-148)||(5279577-5279655)
chr8 (66-148)||(5316437-5316519)
chr8 (47-140)||(14946588-14946681)
chr8 (81-148)||(5309804-5309871)
chr8 (66-148)||(5287309-5287391)
[»] chr7 (1 HSPs)
chr7 (282-335)||(38957321-38957375)
[»] chr4 (2 HSPs)
chr4 (285-319)||(683081-683115)
chr4 (210-248)||(19262983-19263021)
[»] chr3 (1 HSPs)
chr3 (282-331)||(38612911-38612960)


Alignment Details
Target: chr6 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 13 - 603
Target Start/End: Complemental strand, 31524009 - 31523419
Alignment:
Q  13 aatatatgtacctacatacaaaatgtatttgaattttgattagatttgtttgttatatttaggctttggagaaatgtcacctcaaggaaacaatcagcag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31524009 aatatatgtacctacatacaaaatgtatttgaattttgattagatttgtttgttatatttaggctttggagaaatgtcacctcaaggaaacaatcagcag 31523910  T
Q  113 gctaccaagtctcttggactcttctggttagtctttggcaacaatctgttgcatgcatgcaacgttactctttcaacgttaaggaaaatatataatcatc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31523909 gctaccaagtctcttggactcttctggttagtctttggcaacaatctgttgcatgcatgcaacgttactctttcaacgttaaggaaaatatataatcatc 31523810  T
Q  213 tatgaagcacaaacacagacaccggacacgacactggcacataaacactgatnnnnnnnnnnnnnnnttaattaattgaatgtaatcacttgtgtcgtgt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||    
T  31523809 tatgaagcacaaacacagacaccggacacgacactggcacataaacactgataaaaaatttaaaaaattaattaattgaatgtaatcacttgtgtcgtgt 31523710  T
Q  313 cggacaccaaacacgccttccatcagagggttttgcaaccaataagcccttcattgaaatctaattttgacatcatttgcagtgagtgatgaaggtggaa 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31523709 cggacaccaaacacgccttccatcagagggttttgcaaccaataagcccttcattgaaatctaattttgacatcatttgcagtgagtgatgaaggtggaa 31523610  T
Q  413 attggagcttagggcagcgccaactgttttgtcttggaagagtactactcaagaggaacaaaattttagttctagatgaagctacagcctccattgactc 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31523609 attggagcttagggcagcgccaactgttttgtcttggaagagtactactcaagaggaacaaaattttagttctagatgaagctacagcctccattgactc 31523510  T
Q  513 tgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcactgtaataaccattgctcacagaattccaactgtaata 603  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31523509 tgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcactgtaataaccattgctcacagaattccaactgtaata 31523419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 8e-78; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 388 - 603
Target Start/End: Original strand, 5316630 - 5316845
Alignment:
Q  388 tttgcagtgagtgatgaaggtggaaattggagcttagggcagcgccaactgttttgtcttggaagagtactactcaagaggaacaaaattttagttctag 487  Q
    ||||||||||||||||||||||||||||||||||| || ||  | ||| ||||||||||||||||||| ||||| ||||||||||  ||| ||||||| |    
T  5316630 tttgcagtgagtgatgaaggtggaaattggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagaggaacaggattctagttctgg 5316729  T
Q  488 atgaagctacagcctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcactgtaataaccattgctcacag 587  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| ||||||||||    
T  5316730 atgaagctactgcctccattgactctgccacagatgccattctacaaagagtaattagacaagaattttcagaatgcacggttataaccgttgctcacag 5316829  T
Q  588 aattccaactgtaata 603  Q
    ||||||||||||||||    
T  5316830 aattccaactgtaata 5316845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 388 - 603
Target Start/End: Complemental strand, 5279465 - 5279250
Alignment:
Q  388 tttgcagtgagtgatgaaggtggaaattggagcttagggcagcgccaactgttttgtcttggaagagtactactcaagaggaacaaaattttagttctag 487  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| || || || | |||| | |||||||    
T  5279465 tttgcagtgagtgatgaaggtggaaattggagcttaggacagcggcaactgttttgccttggaagagttctacttaaaagaaatagaattcttgttctag 5279366  T
Q  488 atgaagctacagcctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcactgtaataaccattgctcacag 587  Q
    ||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | ||||||||| || |||||  | ||||||||    
T  5279365 atgaagcaacagcatccattgactcagccacagatgcaattctacaaagagtaattagacaagaattcgaagaatgcacagttataactgtggctcacag 5279266  T
Q  588 aattccaactgtaata 603  Q
    | ||||||||||||||    
T  5279265 agttccaactgtaata 5279250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 388 - 599
Target Start/End: Original strand, 5309982 - 5310193
Alignment:
Q  388 tttgcagtgagtgatgaaggtggaaattggagcttagggcagcgccaactgttttgtcttggaagagtactactcaagaggaacaaaattttagttctag 487  Q
    |||||||||||||||||||||||||||||||||||  | ||  | ||| ||||||||||||||||||| ||||| ||||| ||||||||| | ||||| |    
T  5309982 tttgcagtgagtgatgaaggtggaaattggagcttgagacaaaggcaattgttttgtcttggaagagttctacttaagagaaacaaaattcttgttctgg 5310081  T
Q  488 atgaagctacagcctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcactgtaataaccattgctcacag 587  Q
    |||||||||| ||||| ||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||| || |||||  | ||||||||    
T  5310082 atgaagctactgcctctattgactcttccacagatgcaatactacaaagagtaattagacaagaatttgcagaatgcacagtcataactgtggctcacag 5310181  T
Q  588 aattccaactgt 599  Q
    | ||||||||||    
T  5310182 agttccaactgt 5310193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 388 - 603
Target Start/End: Complemental strand, 14946466 - 14946251
Alignment:
Q  388 tttgcagtgagtgatgaaggtggaaattggagcttagggcagcgccaactgttttgtcttggaagagtactactcaagaggaacaaaattttagttctag 487  Q
    ||||||||||||||||||||||||||||||||||| || || |||||| ||||||| || |||||||| ||||| ||||||||||||||| | ||| | |    
T  14946466 tttgcagtgagtgatgaaggtggaaattggagcttgggacaacgccaattgttttgcctcggaagagttctacttaagaggaacaaaattcttgttttgg 14946367  T
Q  488 atgaagctacagcctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcactgtaataaccattgctcacag 587  Q
    | |||||||| || |||||||| || |||||||||||||||||||||||| |||| |||||||| |||| ||||||||| || |||||  ||||||||||    
T  14946366 acgaagctactgcatccattgattcagccacagatgccattctacaaagaataatcagacaagagtttgaagaatgcacagttataactgttgctcacag 14946267  T
Q  588 aattccaactgtaata 603  Q
    | ||||||||||||||    
T  14946266 agttccaactgtaata 14946251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 388 - 603
Target Start/End: Complemental strand, 5287192 - 5286977
Alignment:
Q  388 tttgcagtgagtgatgaaggtggaaattggagcttagggcagcgccaactgttttgtcttggaagagtactactcaagaggaacaaaattttagttctag 487  Q
    ||||||||||| ||||||||||||||||||||||| || ||  | ||| ||||||| ||||||||||| ||||| ||||| |||| |||| | ||||| |    
T  5287192 tttgcagtgagcgatgaaggtggaaattggagcttgggacaaaggcaattgttttgccttggaagagttctacttaagagaaacagaattcttgttctgg 5287093  T
Q  488 atgaagctacagcctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcactgtaataaccattgctcacag 587  Q
    ||||||| ||||| |||||||||||||| || ||||| |||||||||||||||||||||||||||||| |||||||||| || |||||  | ||||||||    
T  5287092 atgaagcaacagcatccattgactctgcgacggatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataactgtggctcacag 5286993  T
Q  588 aattccaactgtaata 603  Q
    | ||||||||||||||    
T  5286992 agttccaactgtaata 5286977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 390 - 603
Target Start/End: Original strand, 15128616 - 15128829
Alignment:
Q  390 tgcagtgagtgatgaaggtggaaattggagcttagggcagcgccaactgttttgtcttggaagagtactactcaagaggaacaaaattttagttctagat 489  Q
    ||||||||||||||||||||||||||||||||| || || |||||| | ||||| || |||||||| ||||| || ||||||| |||| | ||| | |||    
T  15128616 tgcagtgagtgatgaaggtggaaattggagcttgggacaacgccaattattttgcctcggaagagttctacttaaaaggaacagaattcttgttttggat 15128715  T
Q  490 gaagctacagcctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcactgtaataaccattgctcacagaa 589  Q
    |||||||| || |||||||| || ||||||||||| |||||||||||| |||||||||||||||||| ||||||||| || |||||  |||||||||||     
T  15128716 gaagctactgcatccattgattcagccacagatgcgattctacaaagaataattagacaagaatttgaagaatgcacagttataactgttgctcacagag 15128815  T
Q  590 ttccaactgtaata 603  Q
    ||||||||||||||    
T  15128816 ttccaactgtaata 15128829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 392 - 599
Target Start/End: Complemental strand, 5348146 - 5347939
Alignment:
Q  392 cagtgagtgatgaaggtggaaattggagcttagggcagcgccaactgttttgtcttggaagagtactactcaagaggaacaaaattttagttctagatga 491  Q
    |||||||| ||||||| | |||||||||| | || ||  | ||| ||||||| ||||||||||| || || || || || |||||| ||||| | |||||    
T  5348146 cagtgagtaatgaaggggaaaattggagcatgggccaaagacaattgttttgccttggaagagtccttcttaaaagaaataaaattctagttttggatga 5348047  T
Q  492 agctacagcctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcactgtaataaccattgctcacagaatt 591  Q
    |||||| ||||| ||||| |||||||||||||| |||||||||| | |||||||||||||||||||||||||||| || |||||  | ||||| ||| ||    
T  5348046 agctactgcctctattgattctgccacagatgctattctacaaaaaataattagacaagaatttgcagaatgcacagttataactgtagctcatagagtt 5347947  T
Q  592 ccaactgt 599  Q
    ||||||||    
T  5347946 ccaactgt 5347939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 15128381 - 15128477
Alignment:
Q  70 tttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtctttggcaacaatctgttgcat 166  Q
    |||||||| | ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||| ||||||    
T  15128381 tttaggctgtagagaaatgtcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaaatctttggcaacaatctattgcat 15128477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 5279655 - 5279577
Alignment:
Q  70 tttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtcttt 148  Q
    |||||||| | ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  5279655 tttaggctgtagagaaatgtcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaagtcttt 5279577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 5316437 - 5316519
Alignment:
Q  66 tatatttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtcttt 148  Q
    |||||||||||| |  | |||||||| || |||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  5316437 tatatttaggctgtaaaaaaatgtcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaagtcttt 5316519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 14946681 - 14946588
Alignment:
Q  47 tttgattagatttgtttgttatatttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggt 140  Q
    |||||||| ||||| ||  ||| |||||||| | ||||||||||| || |||||||||||| ||| ||||||||||||||||||||||||||||    
T  14946681 tttgattatatttgatttgtatgtttaggctgtagagaaatgtcagcttaaggaaacaatctgcaagctaccaagtctcttggactcttctggt 14946588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 5309804 - 5309871
Alignment:
Q  81 gagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtcttt 148  Q
    ||||||||||| || |||||||||||||||| |||| ||||||||||||||||||||||| |||||||    
T  5309804 gagaaatgtcagcttaaggaaacaatcagcaagctatcaagtctcttggactcttctggtaagtcttt 5309871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 5287391 - 5287309
Alignment:
Q  66 tatatttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtcttt 148  Q
    |||||||||||| | || |||||||| || |||||||||||||||| |||||||| |||||| |||||||||||| |||||||    
T  5287391 tatatttaggctgtagaaaaatgtcagcttaaggaaacaatcagcaagctaccaaatctcttagactcttctggtaagtcttt 5287309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 38957375 - 38957321
Alignment:
Q  282 aattaattgaatgtaatcacttgtgtc-gtgtcggacaccaaacacgccttccat 335  Q
    |||||||||||||||||||| |||||| |||||| |||| | |||||||||||||    
T  38957375 aattaattgaatgtaatcacatgtgtcagtgtcgtacactagacacgccttccat 38957321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 319
Target Start/End: Original strand, 683081 - 683115
Alignment:
Q  285 taattgaatgtaatcacttgtgtcgtgtcggacac 319  Q
    ||||||||||||||||| |||||||||||||||||    
T  683081 taattgaatgtaatcacatgtgtcgtgtcggacac 683115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 19263021 - 19262983
Alignment:
Q  210 atctatgaagcacaaacacagacaccggacacgacactg 248  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  19263021 atctgtgaagcacgaacacagacaccggacacgacactg 19262983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 38612960 - 38612911
Alignment:
Q  282 aattaattgaatgtaatcacttgtgtcgtgtcggacaccaaacacgcctt 331  Q
    |||||| |||||||| || | ||||||||||||||||||||||| |||||    
T  38612960 aattaactgaatgtactcgcatgtgtcgtgtcggacaccaaacatgcctt 38612911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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