View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7680_high_9 (Length: 564)
Name: NF7680_high_9
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7680_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 109 - 553
Target Start/End: Original strand, 50966311 - 50966751
Alignment:
| Q |
109 |
ttctttaattacattggtttcatttcatatacgggccacatgggtcagggtcatgctgccacttccttgtacctatgtgtgtgcacatatatcattttaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50966311 |
ttctttaattacattggtttcatttcatatacgggccacatgggtcagggtcatgctgccacttccttgtacctatgtgtgtgcacatatatcattttaa |
50966410 |
T |
|
| Q |
209 |
acataaaaacgaaattctactaacattctccattttatacactaaaccacatataaacggacatggaaagatagattccagttttgacattcatataata |
308 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50966411 |
acataaaaacgaaattctactcacattctccattttatacactaaaccacatataaacggacatgg-aagatagattccagttttgacattcatataata |
50966509 |
T |
|
| Q |
309 |
gaagagagaagctattcagttctccatcgtaaactattataccctttcggtctcctcgtaaactcttctaccactacgaaatttgatttcttttaacaaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50966510 |
gaagagagaagctattcagttctccatcgtaaactattataccctttcggtctcctcgtaaactcttctaccactacgaaatttgatttcttttaacaaa |
50966609 |
T |
|
| Q |
409 |
acgaattaaatacnnnnnnngtttaacgggtactcaatcgggttaggctacattttaatccttaaaagaatttcagaagtgggtatataaacca-ttatt |
507 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
50966610 |
acgaattaaatacaaaa----tataacgggtactcaatcgggttaggctacattttaatccttaaaagaatttcagaagtgggtatataaaccatttatt |
50966705 |
T |
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| Q |
508 |
cataataccaacaataaaaattaaaagtgataccatattgaatatt |
553 |
Q |
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| T |
50966706 |
cataataccaacaataaaaattaaaagtgataccatattgaatatt |
50966751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 109 - 553
Target Start/End: Original strand, 51069446 - 51069886
Alignment:
| Q |
109 |
ttctttaattacattggtttcatttcatatacgggccacatgggtcagggtcatgctgccacttccttgtacctatgtgtgtgcacatatatcattttaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51069446 |
ttctttaattacattggtttcatttcatatacgggccacatgggtcagggtcatgctgccacttccttgtacctatgtgtgtgcacatatatcattttaa |
51069545 |
T |
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| Q |
209 |
acataaaaacgaaattctactaacattctccattttatacactaaaccacatataaacggacatggaaagatagattccagttttgacattcatataata |
308 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
51069546 |
acataaaaacgaaattctactcacattctccattttatacactaaaccacatataaacggacatgg-aagatagattccagttttgacattcatataata |
51069644 |
T |
|
| Q |
309 |
gaagagagaagctattcagttctccatcgtaaactattataccctttcggtctcctcgtaaactcttctaccactacgaaatttgatttcttttaacaaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51069645 |
gaagagagaagctattcagttctccatcgtaaactattataccctttcggtctcctcgtaaactcttctaccactacgaaatttgatttcttttaacaaa |
51069744 |
T |
|
| Q |
409 |
acgaattaaatacnnnnnnngtttaacgggtactcaatcgggttaggctacattttaatccttaaaagaatttcagaagtgggtatataaacca-ttatt |
507 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51069745 |
acgaattaaatacaaaa----tataacgggtactcaatcgggttaggctacattttaatccttaaaagaatttcagaagtgggtatataaaccatttatt |
51069840 |
T |
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| Q |
508 |
cataataccaacaataaaaattaaaagtgataccatattgaatatt |
553 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51069841 |
cataataccaacaataaaaattaaaagtgataccatattgaatatt |
51069886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 50966033 - 50966130
Alignment:
| Q |
19 |
atatggatgggtcgttttatttgggtataatatgatggtacgtggggtaggtgtggaggttttggacaagtgtgaaaattttgtacagctttctttaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50966033 |
atatggatgggtcgttttatttgggtataatatgatggtacgtggggtaggtgtggaggttttggacaagtgtgaaaattttgtacagctttctttaa |
50966130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 51069168 - 51069265
Alignment:
| Q |
19 |
atatggatgggtcgttttatttgggtataatatgatggtacgtggggtaggtgtggaggttttggacaagtgtgaaaattttgtacagctttctttaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51069168 |
atatggatgggtcgttttatttgggtataatatgatggtacgtggggtaggtgtggaggttttggacaagtgtgaaaattttgtacagctttctttaa |
51069265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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