View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7680_low_15 (Length: 424)
Name: NF7680_low_15
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7680_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 48736913 - 48737085
Alignment:
| Q |
9 |
cacacacgcacacaccaacaacaacatccaaaaatggacgcatgattgtaggatagtaccttctcagttggaggtgggggcacagtctcagcttcttcaa |
108 |
Q |
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| T |
48736913 |
cacacacacacacaccaacaacaacatccaaaaatggacgcatgattgtaggatagtaccttctcagttggaggtgggggcacagtctcagcttcttcaa |
48737012 |
T |
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| Q |
109 |
ctttaaagggctcatcaatcttgttagaatccgtacagaaacttctcccgttaatcgacacagccattgcact |
181 |
Q |
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| T |
48737013 |
ctttaaagggctcatcaatcttgttagaatccgtacagaaacttctcccgttaatcgacacagccattgcact |
48737085 |
T |
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Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 247 - 406
Target Start/End: Original strand, 48737151 - 48737316
Alignment:
| Q |
247 |
tataacttagaatgtgtaaccta------accctaacaatcatatattgaaacgatacgatcatagaacaaaaaactgcaatgatgatttaaaaagggag |
340 |
Q |
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| T |
48737151 |
tataacttagaatgtgtaacctaaccctaaccctaacaatcatatattgaaacgatacgatcatagaacaaaaaactgcaatgatgatttaaaaagggag |
48737250 |
T |
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| Q |
341 |
aaaaaacaaacttgagtctggaaatggaggatggtgaggaatgaatcaagcgcgagatgattgtct |
406 |
Q |
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| T |
48737251 |
aaaaaacaaacttgagtctggaaatggaggatgatgaggaatgaatcaagcgcgagatgattgtct |
48737316 |
T |
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