View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7680_low_17 (Length: 386)
Name: NF7680_low_17
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7680_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 20 - 377
Target Start/End: Original strand, 2700080 - 2700437
Alignment:
| Q |
20 |
tatccttcagttcaaacccttttaagcaattacaaatagccgaacccgaaaccgacaattcacaagctgcaaaatcaccacaatagttataaacctcaca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2700080 |
tatccttcagttcaaacccttttaagcaattacaaatagccgaacccgaaaccgacaattcacaagctgcaaaatcaccacaatagttataaacctcaca |
2700179 |
T |
|
| Q |
120 |
ctgattatgaggccctttttgtatctcagtccaacgtttctcattttctttccatagaaactctctttcaataccatcccaaccaatctgaaacctcact |
219 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2700180 |
cacattatgaggccctttttgtatctcagtccaacgtttctcattttctttccatagaaactctctttcaataccatcccaaccaatctgaaacctcact |
2700279 |
T |
|
| Q |
220 |
gaactattatcattctccttcaactcgttatcattataaacaaaagacctatctccattactatcataattaagtataaaaccatgaagaaaactacctg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2700280 |
gaactattatcattctccttcaactcgttatcattataaacaaaagacctatctccattactatcataattaagtataaaaccatgaagaaaactacctg |
2700379 |
T |
|
| Q |
320 |
tcatatcaacaccagtaaaaattctaccatcccaataaccacttctccatgttcttct |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2700380 |
tcatatcaacaccagtaaaaattctaccatcccaataaccacttctccatgttcttct |
2700437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 28 - 378
Target Start/End: Original strand, 2692389 - 2692736
Alignment:
| Q |
28 |
agttcaaacccttttaagcaattacaaatagccgaacccgaaaccgacaattcacaagctgcaaaatcaccacaatagttataaacctcacactgattat |
127 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||| | || |||||||||||||| |||||| ||||||||||||||| | ||||||| ||||| |
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|
| T |
2692389 |
agttcaaacccttgtaagcaactacaaatagccgaacccaacactgacaattcacaagcagcaaaactaccacaatagttatataattcacactcattat |
2692488 |
T |
|
| Q |
128 |
gaggccctttttgtatctcagtccaacgtttctcattttctttccatagaaactctctttcaataccatcccaaccaatctgaaacctcactgaactatt |
227 |
Q |
| |
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| |||||||||||||||||| ||||||||||||||||||| ||||||| || |||||||||| |||||||||||||||||||||||||||| ||| | |
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|
| T |
2692489 |
ggggccctttttgtatctcaatccaacgtttctcattttcgttccatacaagctctctttcataaccatcccaaccaatctgaaacctcactaaac---t |
2692585 |
T |
|
| Q |
228 |
atcattctccttcaactcgttatcattataaacaaaagacctatctccattactatcataattaagtataaaaccatgaagaaaactacctgtcatatca |
327 |
Q |
| |
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| ||||| |||| |||| |||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
2692586 |
accattcaacttccactcattatcattataaacaaaatacctatctccattattatcataattaagtacaaaaccatgaagaaaactgcctgtcatatca |
2692685 |
T |
|
| Q |
328 |
acaccagtaaaaattctaccatcccaataaccacttctccatgttcttctc |
378 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| || ||||| |
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|
| T |
2692686 |
acaccagtaaaaattctaccatcccagtaaccacttctccatatttttctc |
2692736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 20 - 378
Target Start/End: Original strand, 14521455 - 14521813
Alignment:
| Q |
20 |
tatccttcagttcaaacccttttaagcaattacaaatagccgaacccgaaaccgacaattcacaagctgcaaaatcaccacaatagttataaacctcaca |
119 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||||||||||| |||||||| | ||| ||||||| ||||||||| |||||||||||||||| ||||| |
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|
| T |
14521455 |
tatcctttagttcaaacccttgtaagcaactacaaatagcccaacccgaatctgacgtatcacaagatgcaaaatcgccacaatagttataaaattcaca |
14521554 |
T |
|
| Q |
120 |
ctgattatgaggccctttttgtatctcagtccaacgtttctcattttctttccatagaaactctctttcaataccatcccaaccaatctgaaacctcact |
219 |
Q |
| |
|
||||||||||||||| ||||| || || ||||| ||||||| |||| ||||||| || |||||||||| |||||||||||||||||||||||| ||| |
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|
| T |
14521555 |
ctgattatgaggccccttttgattcacactccaatatttctcagtttcattccatataagctctctttcataaccatcccaaccaatctgaaacctaact |
14521654 |
T |
|
| Q |
220 |
gaactattatcattctccttcaactcgttatcattataaacaaaagacctatctccattactatcataattaagtataaaaccatgaagaaaactacctg |
319 |
Q |
| |
|
||||||||| ||||| |||| |||| |||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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|
| T |
14521655 |
gaactattaccattcaacttccactcattatcattataaacaaaatatctatctccattactatcataatttagtataaaaccatgaagaaaactacttt |
14521754 |
T |
|
| Q |
320 |
tcatatcaacaccagtaaaaattctaccatcccaataaccacttctccatgttcttctc |
378 |
Q |
| |
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|| ||||||||| ||||||| ||||||||||||||||||||||||||| || ||||| |
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|
| T |
14521755 |
tcgcatcaacaccggtaaaaaccctaccatcccaataaccacttctccatttttttctc |
14521813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 368
Target Start/End: Complemental strand, 36288777 - 36288737
Alignment:
| Q |
328 |
acaccagtaaaaattctaccatcccaataaccacttctcca |
368 |
Q |
| |
|
||||| || |||| ||||||||||||||||||||||||||| |
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|
| T |
36288777 |
acacctgtgaaaactctaccatcccaataaccacttctcca |
36288737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 12096797 - 12096837
Alignment:
| Q |
328 |
acaccagtaaaaattctaccatcccaataaccacttctcca |
368 |
Q |
| |
|
||||| || |||| ||||||||||||||||||||||||||| |
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|
| T |
12096797 |
acacctgtgaaaactctaccatcccaataaccacttctcca |
12096837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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