View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7680_low_2 (Length: 959)
Name: NF7680_low_2
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7680_low_2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 741; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 741; E-Value: 0
Query Start/End: Original strand, 6 - 943
Target Start/End: Original strand, 34794913 - 34795863
Alignment:
| Q |
6 |
gtgagatgaaaacgaaggcgggcaaggatgagaagggatgatgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaa |
105 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34794913 |
gtgagatgaaaacgaaggcgagcaaggatgagaagggatgatgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaa |
34795012 |
T |
|
| Q |
106 |
tgatttagctgttgtccaatgcttctatggaggaaaagcatggatgatgnnnnnnn-ttagaacgcgttacagagaagagaaactgaaaaggtgtacatg |
204 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| || |||| |
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| T |
34795013 |
tgatttggctgttgtccaatgcttctatggaggaaaagcatggatgatgaaaaaaaattagaacgcgttagagagaagagaaactgaaaaggcgtgcatg |
34795112 |
T |
|
| Q |
205 |
cagtttataaccagagtgaaaggaataagaagacgcgtgtgtttctattctttaattgacgacaacttaacttttctaacaacatgagaggtttgtgtca |
304 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34795113 |
caatttataaccagagtgaagggaataagaagaggcgtgtgtttctattctttaattgacgacaacttaacttttctaacaacatgggaggtttgtgtca |
34795212 |
T |
|
| Q |
305 |
tgtgacaaaatagaggagatgtcagtgtcatttnnnnnnnccttaggagtcactggtgtannnnnnnnnnnnnnctaatatcaaactagtaaacaataat |
404 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| ||||||||||||| | |||| |||||||||||||| ||||||||||| |
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|
| T |
34795213 |
tgtgacaaaatagaggagatggctgtgtcatttaaagaaaccttaggagtcaccgatgtatttttcctttttttctaatatcaaactactaaacaataat |
34795312 |
T |
|
| Q |
405 |
cttattttctgactcactttcttttctctttctatctttaatatctttcctccctcaaccaaacaaaaaataaagaaggtaggaagactacaaaatgtgg |
504 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34795313 |
cttattttctcactcactttcttttctctttctatctttaatatctttcctccctcaaccaaacaaaaaataaagaaggtaggaagactacaaaatgtgg |
34795412 |
T |
|
| Q |
505 |
atcttattttcactttct-----------atcttttatgagggactaaattagatctt-gcaatttttctaagagactataagctaagacatggatcttc |
592 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34795413 |
atcttattttcactttcttttctctttctatcttttatgaggggctaaattagatcttagcaatttttctaagagactataagctaagacatggatcttc |
34795512 |
T |
|
| Q |
593 |
aaggccaaatgaataggtgaagcttcttggagaaggcaagtgaagtgagcccaagacccaaagcacaagcacccttaagttgaattccttgcttggaaag |
692 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34795513 |
aaggccaaatgaataggtgaagcttcttggagaaggcaagtgaagtgagcccaagacccaaagcacaagcacccttaagttgaattccttgcttggaaag |
34795612 |
T |
|
| Q |
693 |
cacacaatgacgtggtttgaagaggaagtagaaaacacacccagatgtaaatagcagatgaagcaagttattcttaaatcccaaacctaactcctaaatc |
792 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
34795613 |
cacacaattacgtggtttgaagaggaagtagaaaacacacccagatgtaaatagcagatgaagcaagttattcttaaatcccaaacccaactcctaaatc |
34795712 |
T |
|
| Q |
793 |
aaagcatatccatcacatgcacacgtacaaactcatcccatttataatctcattcgcaaccgttctgttttgtgttttgttccatttctatacagtaaac |
892 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34795713 |
aaagcatatccatcacatgcacacgtacaaactcatcccatttataatctcattcgcaaccgttctgttttgtgttttgttccatttctatacagtaaac |
34795812 |
T |
|
| Q |
893 |
acaacaattacacgtagaaacacaaaacatgtcggactggggaccagtgtt |
943 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34795813 |
acaacaattacacgtagaaacacaaaacatgtcggactggggaccagtgtt |
34795863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 49 - 153
Target Start/End: Complemental strand, 16911469 - 16911365
Alignment:
| Q |
49 |
aaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttagctgttgtccaatgcttctatggaggaaaagcatgg |
148 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||| ||| | ||||||||| ||||||||||||| |||||||||||||| || ||| |||||||||| |
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|
| T |
16911469 |
aaagaaatgatacccaatgcaacaaacaaggatgattattcaagcaactatatccaatgatttagccattgtccaatgcttcgatagagaaaaagcatgg |
16911370 |
T |
|
| Q |
149 |
atgat |
153 |
Q |
| |
|
||||| |
|
|
| T |
16911369 |
atgat |
16911365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 16911333 - 16911266
Alignment:
| Q |
177 |
gagaagagaaactgaaaaggtgtacatgcagtttataaccagagtgaaaggaataagaagacgcgtgt |
244 |
Q |
| |
|
|||||||||| |||||| |||| ||||| |||||||| |||||||||||||| |||||| |||||| |
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|
| T |
16911333 |
gagaagagaagatgaaaatatgtatatgcactttataactagagtgaaaggaatgagaagaggcgtgt |
16911266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 3e-29; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 38303288 - 38303398
Alignment:
| Q |
44 |
tgatgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttagctgttgtccaatgcttctatggaggaaaag |
143 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||| | |
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|
| T |
38303288 |
tgatgaaagaaatgatacataatgcaacagacaaggatgagtatgaaagcaattatacccaatgatttagctgttgtccaatgcttccatggaggaacaa |
38303387 |
T |
|
| Q |
144 |
catggatgatg |
154 |
Q |
| |
|
||| ||||||| |
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|
| T |
38303388 |
catcgatgatg |
38303398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 49677145 - 49677039
Alignment:
| Q |
46 |
atgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttagctgttgtccaatgcttctatggaggaaaagca |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||| ||||||||| || ||||| |||||||| || || |||||| | |
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|
| T |
49677145 |
atgaaagaaacgatacccaatgcaacgaacaatgataagtatgaaagcaattatacctaatgatttaactattgtctaatgcttccatagaagaaaagaa |
49677046 |
T |
|
| Q |
146 |
tggatga |
152 |
Q |
| |
|
| ||||| |
|
|
| T |
49677045 |
tcgatga |
49677039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 49677002 - 49676939
Alignment:
| Q |
180 |
aagagaaactgaaaaggtgtacatgcagtttataaccagagtgaaaggaataagaagacgcgtg |
243 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
49677002 |
aagagaaactgaaaaagtgtgtatgcaatttataaccagagtgaaaggaatgagaagaggcgtg |
49676939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 267 - 337
Target Start/End: Complemental strand, 26154555 - 26154485
Alignment:
| Q |
267 |
caacttaacttttctaacaacatgagaggtttgtgtcatgtgacaaaatagaggagatgtcagtgtcattt |
337 |
Q |
| |
|
||||||||| |||||||| ||| |||||||| || ||||||||||||||||| | |||| ||||||||| |
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|
| T |
26154555 |
caacttaacgtttctaacgacagcggaggtttgggttatgtgacaaaatagagggggtgtctgtgtcattt |
26154485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 267 - 337
Target Start/End: Complemental strand, 26167853 - 26167783
Alignment:
| Q |
267 |
caacttaacttttctaacaacatgagaggtttgtgtcatgtgacaaaatagaggagatgtcagtgtcattt |
337 |
Q |
| |
|
||||||||| |||||||| ||| |||||||| || ||||||||||||||||| | |||| ||||||||| |
|
|
| T |
26167853 |
caacttaacgtttctaacgacagcggaggtttgggttatgtgacaaaatagagggggtgtctgtgtcattt |
26167783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 30332696 - 30332822
Alignment:
| Q |
27 |
gcaaggatgagaagggatgatgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttagctgttgtccaatg |
126 |
Q |
| |
|
||||||||||||| | ||||||||||||| ||| | |||||||| ||||| |||| |||| ||| ||||||||| | ||||| ||||||||||| ||||| |
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|
| T |
30332696 |
gcaaggatgagaatg-atgatgaaagaaatgatgcacaatgcaatgaacagggataagtacgaaagcaactatatcgaatgaattagctgttgtgcaatg |
30332794 |
T |
|
| Q |
127 |
cttctatggaggaaaagcatggatgatg |
154 |
Q |
| |
|
|||| ||||||||||||||| ||||||| |
|
|
| T |
30332795 |
cttccatggaggaaaagcatcgatgatg |
30332822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 12140053 - 12139979
Alignment:
| Q |
43 |
atgatgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttagctgtt |
118 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||||||||| || |||||||||| ||||| ||||| |||| |
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|
| T |
12140053 |
atgatgaaaaaaacgatacc-aatgcaacaaacaaggatgagtacaaaagcaactatacacaatgctttagttgtt |
12139979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 17364554 - 17364612
Alignment:
| Q |
179 |
gaagagaaactgaaaaggtgtacatgcagtttataaccagagtgaaaggaataagaaga |
237 |
Q |
| |
|
||||||||| |||||| || | ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17364554 |
gaagagaaattgaaaatgtttgtatgcagtttataaccagagtgaaaggaatgagaaga |
17364612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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