View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7680_low_22 (Length: 336)
Name: NF7680_low_22
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7680_low_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 327
Target Start/End: Original strand, 1320493 - 1320800
Alignment:
| Q |
20 |
ggtatagttgtgaaccttcaagatcatcttcctctagctcaaagtttgccatgtcacctctaacaaatatgctatgaatgatggaaattggaatatcttc |
119 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1320493 |
ggtatagttgtgaagcttcaagatcatcttcctctagctcaaagtttgccatgtcacctctaacaaatatgctatgaatgatggaaattggaatatcttc |
1320592 |
T |
|
| Q |
120 |
tggagggggtaaagctgcatcataaacatatattatcaatgtaagcttgtatatgtattatatttacacatcattagtaaaaacaaattaaagtcttact |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
1320593 |
tggagggggtaaagctgcatcataaacatatattaccaatgtaagcttgtatatgtattatatttacacaacattagtaaaaacaaattaaagtattact |
1320692 |
T |
|
| Q |
220 |
ttgtgatagcttgacaatatcttcctctggaataaaaactttatgaaatttttgaccacttttgagctcccatagtgatatcaactcattttgtgatatg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1320693 |
ttgtgatagcttgacaatatcttcctctggaacaaaaactttatgaaatttttgaccacttttgagctcccatagtgatatcaactcattttgtgatatg |
1320792 |
T |
|
| Q |
320 |
atattctt |
327 |
Q |
| |
|
|||||||| |
|
|
| T |
1320793 |
atattctt |
1320800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 209 - 328
Target Start/End: Original strand, 1336444 - 1336563
Alignment:
| Q |
209 |
aaagtcttactttgtgatagcttgacaatatcttcctctggaataaaaactttatgaaatttttgaccacttttgagctcccatagtgatatcaactcat |
308 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||| | ||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1336444 |
aaagtcttactttgtgatagcttgataatatcttcttctggaacaaatactttgttaaagttttgaccacttttgagttcccatagtgatatcaactcat |
1336543 |
T |
|
| Q |
309 |
tttgtgatatgatattcttc |
328 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
1336544 |
tttgtgatatgatattcttc |
1336563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 1336007 - 1336127
Alignment:
| Q |
22 |
tatagttgtgaaccttcaagatcatcttcctctagctcaaagtttgccatgtcacctctaacaaatatgctatgaatgatggaaattggaatatcttctg |
121 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1336007 |
tatagttgtgaagcttcaaggtcattttcctctagctcaaagta---catgtcgcctttaacaaatatgctatgaacgatggaaattggaatatcttctg |
1336103 |
T |
|
| Q |
122 |
gagggggtaaagctgcatcataaa |
145 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
1336104 |
gagggggtaaagctgcatcataaa |
1336127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 211 - 328
Target Start/End: Complemental strand, 1264218 - 1264101
Alignment:
| Q |
211 |
agtcttactttgtgatagcttgacaatatcttcctctggaataaaaactttatgaaatttttgaccacttttgagctcccatagtgatatcaactcattt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||| | || |||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
1264218 |
agtcttactttgtgatagcttgacaatatcttcttctggagcaaaaactttgttaaggatttgaccatttttaagctcccatagtgatatcaactcattt |
1264119 |
T |
|
| Q |
311 |
tgtgatatgatattcttc |
328 |
Q |
| |
|
|||| ||| | ||||||| |
|
|
| T |
1264118 |
tgtgttataaaattcttc |
1264101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 1264427 - 1264310
Alignment:
| Q |
22 |
tatagttgtgaaccttcaagatcatcttcctctagctcaaagtttgccatgtcacctctaacaaatatgctatgaatgatggaaattggaatatcttctg |
121 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||| | | ||| ||| |||||||| ||||||| ||||||| ||| |||| | || |
|
|
| T |
1264427 |
tatagttgtgaagcttcaaggtcatcttcctctagctcaaagttcacaaggtccccttgaacaaatacactatgaagaatggaaactggtatattgtgtg |
1264328 |
T |
|
| Q |
122 |
gagggggtaaagctgcat |
139 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
1264327 |
gagggggtaaaactgcat |
1264310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 327
Target Start/End: Complemental strand, 1253575 - 1253519
Alignment:
| Q |
271 |
ttgaccacttttgagctcccatagtgatatcaactcattttgtgatatgatattctt |
327 |
Q |
| |
|
||||||| |||| |||||||||||| |||||||||||||||||| ||| | |||||| |
|
|
| T |
1253575 |
ttgaccatttttaagctcccatagttatatcaactcattttgtgttataaaattctt |
1253519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University