View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7680_low_3 (Length: 724)

Name: NF7680_low_3
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7680_low_3
NF7680_low_3
[»] chr1 (6 HSPs)
chr1 (6-397)||(15884903-15885294)
chr1 (6-391)||(12610760-12611145)
chr1 (6-397)||(12637754-12638145)
chr1 (423-556)||(15885317-15885450)
chr1 (435-528)||(12637632-12637725)
chr1 (427-535)||(12610619-12610727)
[»] scaffold0059 (1 HSPs)
scaffold0059 (6-390)||(62894-63278)
[»] scaffold0554 (1 HSPs)
scaffold0554 (237-381)||(5626-5770)
[»] chr3 (4 HSPs)
chr3 (238-399)||(23146647-23146811)
chr3 (265-399)||(23039772-23039909)
chr3 (265-399)||(23036895-23037032)
chr3 (237-321)||(23033659-23033743)
[»] chr6 (1 HSPs)
chr6 (265-383)||(21780681-21780799)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 6 - 397
Target Start/End: Original strand, 15884903 - 15885294
Alignment:
Q  6 cgaagaatatgcacaatggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggtt 105  Q
    |||| |||||||||||||||||||||||| ||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||    
T  15884903 cgaaaaatatgcacaatggagcttttatcgcaaaaacatgtgagttcattccatccaataagagaagaagtgtttaccaatctcatcaaaaggattggtt 15885002  T
Q  106 ccaagcaaggttcatccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaaga 205  Q
    | |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| | |||||| ||||||||||||||||||||||||||    
T  15885003 cgaagcaagggtcatccatcaacctcactgaacttgtagtttcatcgacatttgctatcctttcaagggctgcatttggaaacaaatgcaaagaccaaga 15885102  T
Q  206 agagttcgcgtggttggggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgttcctggtttg 305  Q
    |||||||||||  ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||||||||||| | ||||||    
T  15885103 agagttcgcgtctttggggaagggagaatcaattgctggaggttttgacataggtgaactgtttccttcatctaaatggattcaacttgtttccggtttg 15885202  T
Q  306 aggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcattgaacataaagaagcaaagtcaaaagccaaaga 397  Q
    ||||||||||||||||||||||||||||| |||||||  ||||| ||||| |||||||||||||||||||||||||| |||||||| |||||    
T  15885203 aggcctaaacttgagaggttgcatagacgtattgatcgaatactagaaaacatcatcattgaacataaagaagcaaattcaaaagcaaaaga 15885294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 6 - 391
Target Start/End: Complemental strand, 12611145 - 12610760
Alignment:
Q  6 cgaagaatatgcacaatggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggtt 105  Q
    |||| |||||||||||||||||||||  ||||||| ||||| ||||| ||  | |||||||||||||||| ||||| ||||||| | ||||  |||| ||    
T  12611145 cgaaaaatatgcacaatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt 12611046  T
Q  106 ccaagcaaggttcatccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaaga 205  Q
    |  | ||||| ||  || ||||  | ||| | ||||||||||||||||| ||| ||||| || | |||||||||||||| | |||| |||||| |  |||    
T  12611045 cgcaacaagggtcgcccgtcaatataactcagcttgtagtttcatcaacattttctatcattacaaaggctgcgtttggcagcaaaggcaaaggcagaga 12610946  T
Q  206 agagttcgcgtggttggggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgttcctggtttg 305  Q
    |||||| |  |   | ||  | ||||||||||||||||||||||||||||| | |||| | ||||||||||| ||||||||||||| |||| | ||||||    
T  12610945 agagtttggatctattggagatggagaatcaattgcaggaggttttgacatagctgaattatttccttcagcgaaatggcttcaacgtgtttccggtttg 12610846  T
Q  306 aggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcattgaacataaagaagcaaagtcaaaagc 391  Q
    ||||||||||| |||||||||||||| | ||||||||| ||||| ||||| ||  ||| |||||||||||||||||||||||||||    
T  12610845 aggcctaaactggagaggttgcataggcaaattgatcaaatactagaaaacattgtcactgaacataaagaagcaaagtcaaaagc 12610760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 6 - 397
Target Start/End: Complemental strand, 12638145 - 12637754
Alignment:
Q  6 cgaagaatatgcacaatggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggtt 105  Q
    |||| |||||||||||| || ||| |  | ||||||||||| |||||||||  ||| ||||||||||||| | | ||||||||||||||||| |||| ||    
T  12638145 cgaaaaatatgcacaattgaacttcttacgcaaaaacgtgttagttcattccggcctataagagaagaagagttcaccaatctcatcaaaagtattgatt 12638046  T
Q  106 ccaagcaaggttcatccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaaga 205  Q
    |  | ||||| ||| |||||||| ||||| ||   |||||| ||||||   |  ||||   | | | |||||||||||||||||||||||||| ||||||    
T  12638045 cacaacaaggatcacccatcaacatcactcaagccgtagttacatcaattatgactattactacaagggctgcgtttggaaacaaatgcaaaggccaaga 12637946  T
Q  206 agagttcgcgtggttggggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgttcctggtttg 305  Q
    | || |||  | |||||  || ||||||||| ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||     
T  12637945 acagctcgtatcgttggcaaatggagaatcagttggaggaggttttgacataggtgaattgtttccttcagctaaatggcttcaactagtttctggtttc 12637846  T
Q  306 aggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcattgaacataaagaagcaaagtcaaaagccaaaga 397  Q
    ||| ||||| |||||   |||||||||| |||||||| |||| | | ||| ||||||| ||||||||||||||| ||||||||||| |||||    
T  12637845 aggtctaaaattgaggtattgcatagacaaattgatcttatattagtaaacatcatcaatgaacataaagaagctaagtcaaaagcaaaaga 12637754  T

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Target: chr1; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 423 - 556
Target Start/End: Original strand, 15885317 - 15885450
Alignment:
Q  423 gatttggttgacgttcttctaaaattccaaggtggaaatgataatgacaaagatatatgcttaactgacaacaacatcaaggctgtaatcctggtaagta 522  Q
    ||||||||||||||||||||||||| |||| || | ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| |    
T  15885317 gatttggttgacgttcttctaaaataccaacgtcgcaatgataatgaaaaagatatatgcttaactgacaacaacatcaaggctgtactcctagtaagga 15885416  T
Q  523 taataaaacccttcaagtataatttagatgaatg 556  Q
    ||||||| ||||| ||||||||||||||||||||    
T  15885417 taataaaccccttgaagtataatttagatgaatg 15885450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 435 - 528
Target Start/End: Complemental strand, 12637725 - 12637632
Alignment:
Q  435 gttcttctaaaattccaaggtggaaatgataatgacaaagatatatgcttaactgacaacaacatcaaggctgtaatcctggtaagtataataa 528  Q
    ||||||| |||||| |||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  12637725 gttcttcaaaaatttcaaggtggtaatgatattgaccaagatatatgcttaactgacaacaatatcaaggctataatcctggtaagtataataa 12637632  T

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Target: chr1; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 427 - 535
Target Start/End: Complemental strand, 12610727 - 12610619
Alignment:
Q  427 tggttgacgttcttctaaaattccaaggtggaaatgataatgacaaagatatatgcttaactgacaacaacatcaaggctgtaatcctggtaagtataat 526  Q
    |||| |||||||||||||||||||||||||| ||||| |   || |||||||||| |||||||| ||||| |||||| || ||||||||||||| |||||    
T  12610727 tggtagacgttcttctaaaattccaaggtggtaatgacagcaaccaagatatatgtttaactgataacaatatcaagtctataatcctggtaaggataat 12610628  T
Q  527 aaaaccctt 535  Q
    ||| |||||    
T  12610627 aaacccctt 12610619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 85; Significance: 4e-40; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 6 - 390
Target Start/End: Complemental strand, 63278 - 62894
Alignment:
Q  6 cgaagaatatgcacaatggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggtt 105  Q
    |||| |||||||||||| ||||||||  | ||||  ||| | | |||||||  ||||||||||||||||| |||  |||||||||||||||| |||| ||    
T  63278 cgaaaaatatgcacaattgagcttttgactcaaagtcgtatcaattcattccggccaataagagaagaagagctctccaatctcatcaaaaggattgatt 63179  T
Q  106 ccaagcaaggttcatccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaaga 205  Q
       | ||||| |   |  ||||| |||||||||||||| || || ||| | || ||||| |||| | ||||||||||||  |||||||||||| ||||||    
T  63178 tgcaacaaggattgcctgtcaacatcactgaacttgtacttacaacaatgatttctatcatttcaagggctgcgtttggcgacaaatgcaaagcccaaga 63079  T
Q  206 agagttcgcgtggttggggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgttcctggtttg 305  Q
    | |||| ||||  ||||| ||   || |||||||| |||||||||||| ||   |||| | ||||||||||| ||||||||||||||| |   |  |       
T  63078 acagtttgcgtcattgggaaatataggatcaattggaggaggttttgaaataattgaattatttccttcagccaaatggcttcaacttatatttaatcaa 62979  T
Q  306 aggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcattgaacataaagaagcaaagtcaaaag 390  Q
    |||||||||||| ||||||||||||||| | ||||||| ||||| ||||| ||| ||||| |||||||||||||||||| |||||    
T  62978 aggcctaaacttaagaggttgcatagacaacttgatcagatacttgaaaacatcgtcattcaacataaagaagcaaagttaaaag 62894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 237 - 381
Target Start/End: Original strand, 5626 - 5770
Alignment:
Q  237 attgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgttcctggtttgaggcctaaacttgagaggttgcatagacgaa 336  Q
    |||||||||||||||||| | || ||  ||||||| || ||||||||||| ||||  ||| |||||||||||||||| ||||||| | | ||| ||| ||    
T  5626 attgcaggaggttttgacttgggagatttgtttccatctgctaaatggctacaacaagttactggtttgaggcctaagcttgagatgcttcatcgacaaa 5725  T
Q  337 ttgatcatatactggaaaatatcatcattgaacataaagaagcaa 381  Q
     |||||| ||||| ||||| ||||||| ||| |||||||||||||    
T  5726 ctgatcaaatacttgaaaacatcatcaatgagcataaagaagcaa 5770  T

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Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 238 - 399
Target Start/End: Complemental strand, 23146811 - 23146647
Alignment:
Q  238 ttgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgttcctggtttgaggcctaaacttgagaggttgcatagacgaat 337  Q
    ||||||| ||||||||| | || ||  ||||||| |||||||||||| | || |||||| ||||| |||||||||| ||||||||||| ||| ||| ||     
T  23146811 ttgcagggggttttgacttgggagatttgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaac 23146712  T
Q  338 tgatcatatactggaaaatatcatcattgaacataaagaagcaaagt---caaaagccaaagatg 399  Q
    |||||| ||| | ||||| ||||||| ||| |||||||| | |||||   |||||||||||||||    
T  23146711 tgatcagatatttgaaaacatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatg 23146647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 265 - 399
Target Start/End: Complemental strand, 23039909 - 23039772
Alignment:
Q  265 tgtttccttcagctaaatggcttcaacttgttcctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcat 364  Q
    ||||||| |||||||||||| | || |||||| ||||| |||||||||| ||||||||||| ||| ||| || |||||| ||| | ||||| |||||||     
T  23039909 tgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaactgatcagatattagaaaacatcatcaa 23039810  T
Q  365 tgaacataaagaagcaaagt---caaaagccaaagatg 399  Q
    ||| |||||||| | |||||   |||||||||||||||    
T  23039809 tgagcataaagaggaaaagtacacaaaagccaaagatg 23039772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 265 - 399
Target Start/End: Complemental strand, 23037032 - 23036895
Alignment:
Q  265 tgtttccttcagctaaatggcttcaacttgttcctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcat 364  Q
    ||||||| |||||||||||||| || | | || |||||||||||||||| || |||||| | ||| ||| || |||||| ||| | ||||| |||||||     
T  23037032 tgtttccctcagctaaatggctacagcgtattactggtttgaggcctaagctggagaggattcatcgacaaactgatcagatattagaaaacatcatcaa 23036933  T
Q  365 tgaacataaagaagcaaagt---caaaagccaaagatg 399  Q
    ||| |||||||| | |||||   |||||||||||||||    
T  23036932 tgagcataaagaggaaaagtacacaaaagccaaagatg 23036895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 23033743 - 23033659
Alignment:
Q  237 attgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgttcctggtttgaggcctaaacttgaga 321  Q
    ||||||||||||||| || | || ||  ||||||||||  ||||||||||||||| |||| ||||| | |||||||| |||||||    
T  23033743 attgcaggaggttttaacttgggagatttgtttccttcttctaaatggcttcaacatgttactggtattaggcctaagcttgaga 23033659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 265 - 383
Target Start/End: Complemental strand, 21780799 - 21780681
Alignment:
Q  265 tgtttccttcagctaaatggcttcaacttgttcctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcat 364  Q
    ||||||||||  |||||||| || ||| |||| |||| ||||||||||| |||||||| || ||  ||| || |||||| ||| | ||||| |||||||     
T  21780799 tgtttccttctactaaatggattgaacatgttactggattgaggcctaagcttgagagttttcaacgacaaactgatcagatatttgaaaacatcatcaa 21780700  T
Q  365 tgaacataaagaagcaaag 383  Q
     || |||||||| ||||||    
T  21780699 ggaccataaagaggcaaag 21780681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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