View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7680_low_30 (Length: 257)
Name: NF7680_low_30
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7680_low_30 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 6 - 257
Target Start/End: Original strand, 34794913 - 34795165
Alignment:
| Q |
6 |
gtgagatgaaaacgaaggcgggcaaggatgagaagggatgatgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaa |
105 |
Q |
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| T |
34794913 |
gtgagatgaaaacgaaggcgagcaaggatgagaagggatgatgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaa |
34795012 |
T |
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| Q |
106 |
tgatttagctgttgtccaatgcttctatggaggaaaagcatggatgatg-nnnnnnnttagaacgcgttaaagagaagagaaactgaaaaggcgaaaatg |
204 |
Q |
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| T |
34795013 |
tgatttggctgttgtccaatgcttctatggaggaaaagcatggatgatgaaaaaaaattagaacgcgttagagagaagagaaactgaaaaggcgtgcatg |
34795112 |
T |
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| Q |
205 |
cagtttctaaccagtgtgaaaggactaacacgatgcgagtgttgctgttcttt |
257 |
Q |
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| T |
34795113 |
caatttataaccagagtgaagggaataagaagaggcgtgtgtttctattcttt |
34795165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 153
Target Start/End: Complemental strand, 16911469 - 16911365
Alignment:
| Q |
49 |
aaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttagctgttgtccaatgcttctatggaggaaaagcatgg |
148 |
Q |
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| T |
16911469 |
aaagaaatgatacccaatgcaacaaacaaggatgattattcaagcaactatatccaatgatttagccattgtccaatgcttcgatagagaaaaagcatgg |
16911370 |
T |
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| Q |
149 |
atgat |
153 |
Q |
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| T |
16911369 |
atgat |
16911365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 38303288 - 38303398
Alignment:
| Q |
44 |
tgatgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttagctgttgtccaatgcttctatggaggaaaag |
143 |
Q |
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| T |
38303288 |
tgatgaaagaaatgatacataatgcaacagacaaggatgagtatgaaagcaattatacccaatgatttagctgttgtccaatgcttccatggaggaacaa |
38303387 |
T |
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| Q |
144 |
catggatgatg |
154 |
Q |
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| T |
38303388 |
catcgatgatg |
38303398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 49677145 - 49677039
Alignment:
| Q |
46 |
atgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttagctgttgtccaatgcttctatggaggaaaagca |
145 |
Q |
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| T |
49677145 |
atgaaagaaacgatacccaatgcaacgaacaatgataagtatgaaagcaattatacctaatgatttaactattgtctaatgcttccatagaagaaaagaa |
49677046 |
T |
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| Q |
146 |
tggatga |
152 |
Q |
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| T |
49677045 |
tcgatga |
49677039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 30332696 - 30332822
Alignment:
| Q |
27 |
gcaaggatgagaagggatgatgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttagctgttgtccaatg |
126 |
Q |
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| T |
30332696 |
gcaaggatgagaatg-atgatgaaagaaatgatgcacaatgcaatgaacagggataagtacgaaagcaactatatcgaatgaattagctgttgtgcaatg |
30332794 |
T |
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| Q |
127 |
cttctatggaggaaaagcatggatgatg |
154 |
Q |
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| T |
30332795 |
cttccatggaggaaaagcatcgatgatg |
30332822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 12140053 - 12139979
Alignment:
| Q |
43 |
atgatgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttagctgtt |
118 |
Q |
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| T |
12140053 |
atgatgaaaaaaacgatacc-aatgcaacaaacaaggatgagtacaaaagcaactatacacaatgctttagttgtt |
12139979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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