View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7680_low_33 (Length: 248)

Name: NF7680_low_33
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7680_low_33
NF7680_low_33
[»] chr8 (1 HSPs)
chr8 (64-209)||(15243915-15244060)
[»] chr1 (3 HSPs)
chr1 (18-74)||(48470405-48470461)
chr1 (18-82)||(4220958-4221021)
chr1 (18-70)||(6501683-6501735)
[»] chr5 (3 HSPs)
chr5 (18-71)||(33908105-33908158)
chr5 (18-74)||(3436694-3436750)
chr5 (123-160)||(1398245-1398282)
[»] chr4 (3 HSPs)
chr4 (18-74)||(51401318-51401374)
chr4 (123-160)||(34030479-34030516)
chr4 (18-70)||(1705187-1705239)
[»] chr6 (3 HSPs)
chr6 (123-192)||(32465505-32465574)
chr6 (18-74)||(20139288-20139344)
chr6 (18-74)||(22193525-22193581)
[»] chr3 (1 HSPs)
chr3 (123-160)||(21389945-21389982)
[»] chr2 (1 HSPs)
chr2 (18-74)||(9470898-9470954)


Alignment Details
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 209
Target Start/End: Original strand, 15243915 - 15244060
Alignment:
Q  64 cagcccgcaaatataaaaatactcctgaagctgctatttggtctnnnnnnnnnnnnnnngcccaatttcccttttctagcccaatccaacaaaataaatc 163  Q
    |||||||| |||||||||||||||||||||||||| ||||||||               |||||||||| ||||||||||||||||||||||||||||||    
T  15243915 cagcccgcgaatataaaaatactcctgaagctgctgtttggtcttgtgtggtgtgtgtggcccaatttcacttttctagcccaatccaacaaaataaatc 15244014  T
Q  164 attttatgttttccacccatccaacaaaaagaaacaatttcacgtt 209  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||    
T  15244015 atttcatgttttccacccatccaacaaagagaaacaatttcacgtt 15244060  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 48470461 - 48470405
Alignment:
Q  18 tttttagcccggcccgttaaagcccgtagcccgcacgggctaagggcagcccgcaaa 74  Q
    ||||||||||||||||  |||||||| ||||||  ||||||||||||||||||||||    
T  48470461 tttttagcccggcccgaaaaagcccgaagcccgttcgggctaagggcagcccgcaaa 48470405  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 4220958 - 4221021
Alignment:
Q  18 tttttagcccggcccgttaaagcccgtagcccgcacgggctaagggcagcccgcaaatataaaaa 82  Q
    ||||||||| ||||||  |||||||| ||||||| ||| |||||||||||||||||| |||||||    
T  4220958 tttttagcctggcccga-aaagcccgcagcccgctcggactaagggcagcccgcaaaaataaaaa 4221021  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 6501683 - 6501735
Alignment:
Q  18 tttttagcccggcccgttaaagcccgtagcccgcacgggctaagggcagcccg 70  Q
    ||||||||||||||||  |||||||| ||||||   |||||||||||||||||    
T  6501683 tttttagcccggcccgaaaaagcccgaagcccgtttgggctaagggcagcccg 6501735  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 33908158 - 33908105
Alignment:
Q  18 tttttagcccggcccgttaaagcccgtagcccgcacgggctaagggcagcccgc 71  Q
    ||||||||||||||||| |||||||||| ||||  ||||||| |||||||||||    
T  33908158 tttttagcccggcccgtaaaagcccgtaacccgttcgggctacgggcagcccgc 33908105  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 3436750 - 3436694
Alignment:
Q  18 tttttagcccggcccgttaaagcccgtagcccgcacgggctaagggcagcccgcaaa 74  Q
    ||||||||||||| ||  |||||||| ||||||  ||||||||||||||||||||||    
T  3436750 tttttagcccggctcgaaaaagcccgaagcccgttcgggctaagggcagcccgcaaa 3436694  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 1398282 - 1398245
Alignment:
Q  123 gcccaatttcccttttctagcccaatccaacaaaataa 160  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  1398282 gcccaatttcacttttctggcccaatccaacaaaataa 1398245  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 51401374 - 51401318
Alignment:
Q  18 tttttagcccggcccgttaaagcccgtagcccgcacgggctaagggcagcccgcaaa 74  Q
    ||||||||||||||||  ||| |||| | ||||| ||||||||||||||||||||||    
T  51401374 tttttagcccggcccgaaaaaacccgcaacccgctcgggctaagggcagcccgcaaa 51401318  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 34030479 - 34030516
Alignment:
Q  123 gcccaatttcccttttctagcccaatccaacaaaataa 160  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  34030479 gcccaatttcacttttctggcccaatccaacaaaataa 34030516  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 1705239 - 1705187
Alignment:
Q  18 tttttagcccggcccgttaaagcccgtagcccgcacgggctaagggcagcccg 70  Q
    ||||||||||||||||  ||||| |||||||||  |||||| |||||||||||    
T  1705239 tttttagcccggcccgaaaaagctcgtagcccgttcgggctgagggcagcccg 1705187  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 32465574 - 32465505
Alignment:
Q  123 gcccaatttcccttttctagcccaatccaacaaaataaatcattttatgttttccacccatccaacaaaa 192  Q
    |||||||||| |||||||  ||||||||||| ||||||  ||||||  | |||| |||||||||||||||    
T  32465574 gcccaatttcacttttctgacccaatccaactaaataagccatttttagctttctacccatccaacaaaa 32465505  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 20139288 - 20139344
Alignment:
Q  18 tttttagcccggcccgttaaagcccgtagcccgcacgggctaagggcagcccgcaaa 74  Q
    ||||||||||||||||  |||||||| ||||||  ||||| | ||||||||||||||    
T  20139288 tttttagcccggcccgaaaaagcccggagcccgttcgggccacgggcagcccgcaaa 20139344  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 22193581 - 22193525
Alignment:
Q  18 tttttagcccggcccgttaaagcccgtagcccgcacgggctaagggcagcccgcaaa 74  Q
    ||||||||||||||||  |||||||| ||||||  ||||| | ||||||||||||||    
T  22193581 tttttagcccggcccgaaaaagcccggagcccgttcgggccacgggcagcccgcaaa 22193525  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 21389945 - 21389982
Alignment:
Q  123 gcccaatttcccttttctagcccaatccaacaaaataa 160  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  21389945 gcccaatttcacttttctggcccaatccaacaaaataa 21389982  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 9470898 - 9470954
Alignment:
Q  18 tttttagcccggcccgttaaagcccgtagcccgcacgggctaagggcagcccgcaaa 74  Q
    ||||||||||||||||  ||| |||| ||| ||  ||||||||||||||||||||||    
T  9470898 tttttagcccggcccgaaaaatcccgaagcacgttcgggctaagggcagcccgcaaa 9470954  T

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