View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7680_low_34 (Length: 246)

Name: NF7680_low_34
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7680_low_34
NF7680_low_34
[»] chr4 (4 HSPs)
chr4 (1-236)||(1495013-1495249)
chr4 (2-223)||(1516584-1516812)
chr4 (1-182)||(1533137-1533304)
chr4 (135-217)||(48780120-48780202)
[»] chr8 (2 HSPs)
chr8 (135-221)||(12729166-12729253)
chr8 (139-221)||(28696338-28696421)
[»] chr5 (2 HSPs)
chr5 (139-221)||(36202895-36202978)
chr5 (134-223)||(29006244-29006336)
[»] chr3 (2 HSPs)
chr3 (139-217)||(50914667-50914746)
chr3 (135-202)||(33709598-33709667)
[»] chr7 (1 HSPs)
chr7 (138-221)||(12239877-12239961)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 1495249 - 1495013
Alignment:
Q  1 gtgaatagtatttctatgagattgaattctgtcactgctaaataatt-cttctaccagcgatgatctgaaattgaagtgaatcttatttatatatatttc 99  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1495249 gtgaatagtatttctatgagattgaattctgtgactgataaataatttcttctaccagcgatgatctgaaattgaagtgaatcttatttatatatatttc 1495150  T
Q  100 acgttaataggacttgacactttttcggtattacattggaaagttgcaatggttaaaagagaccatttagagaaaaggtgtaaagctttacggttgaagc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1495149 acgttaataggacttgacactttttcggtattacattggaaagttgcaatggttaaaagagaccatttagagaaaaggtgtaaagctttacagttgaagc 1495050  T
Q  200 aatataaccattcatgaacaaaattctttcacaggtt 236  Q
    ||||||||||||||||||||||||||||||| |||||    
T  1495049 aatataaccattcatgaacaaaattctttcaaaggtt 1495013  T

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Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 1516812 - 1516584
Alignment:
Q  2 tgaatagtatttctatgagattgaattctgtcactgctaaataattcttctaccagcgatgatctgaaattgaagtgaatcttatttatatatatttcac 101  Q
    ||||| ||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||     
T  1516812 tgaatcgtatttctatgagattgaagtctgccactgctaaatatttcttctaccagcgatggtctgaaattgaagtaaatcttattaatatatatttcaa 1516713  T
Q  102 gttaataggacttgacactttttcggt-------attacattggaaagttgcaatggttaaaagagaccatttagagaaaaggtgtaaagctttacggtt 194  Q
    ||||||||||| |||||||||||| ||       ||||||||||||| ||||||||||||||||||||  |||||||||||||||||  ||||||    |    
T  1516712 gttaataggacatgacactttttctgtattttggattacattggaaaattgcaatggttaaaagagacattttagagaaaaggtgtagtgctttagaaat 1516613  T
Q  195 gaagcaatataaccattcatgaacaaaat 223  Q
    || ||||||||||||||||||||||||||    
T  1516612 gacgcaatataaccattcatgaacaaaat 1516584  T

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Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 1533304 - 1533137
Alignment:
Q  1 gtgaatagtatttctatgagattgaattctgtcactgctaaataattcttctaccagcgatgatctgaaattgaagtgaatcttatttatatatatttca 100  Q
    |||||| ||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  1533304 gtgaatcgtatttctatgagattgaagtctgccactgctaaatatttcttctaccagcgatggtctaaaattgaagtgaatcttatttatatatatttca 1533205  T
Q  101 cgttaataggacttgacactttttcggtattacattggaaagttgcaatggttaaaagagaccatttagagaaaaggtgtaa 182  Q
     |||||           | ||||   | |||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  1533204 agttaa-----------agtttt---ggattacattggaaagttgcaatggttaaaagagacctattagagaaaaggtgtaa 1533137  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 48780202 - 48780120
Alignment:
Q  135 ttggaaagttgcaatggttaaaagagaccatttagagaaaaggtgtaaagctttacggttgaagcaatataaccattcatgaa 217  Q
    |||||||||||||||| |||||  ||| | |||||||||||||| ||| | || ||  ||||||||||||||| |||||||||    
T  48780202 ttggaaagttgcaatgattaaacaagatcttttagagaaaaggtataatgtttgacaattgaagcaatataactattcatgaa 48780120  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 12729166 - 12729253
Alignment:
Q  135 ttggaaagttgcaatggttaaa-agagaccatttagagaaaaggtgtaaagctttacggttgaagcaatataaccattcatgaacaaa 221  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||| |||  ||  |||||||||||||||||||||||| ||||    
T  12729166 ttggaaagttgcaatggttaaatagagaccttttagagaaaaggtgtaatgctcgacaattgaagcaatataaccattcatgagcaaa 12729253  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 28696421 - 28696338
Alignment:
Q  139 aaagttgcaatggttaaa-agagaccatttagagaaaaggtgtaaagctttacggttgaagcaatataaccattcatgaacaaa 221  Q
    ||||||||||||| |||| ||||| | ||||||||||| |||||| |||| ||  |||||||||| ||||||||||||||||||    
T  28696421 aaagttgcaatgggtaaatagagatcttttagagaaaatgtgtaatgcttaacaattgaagcaatgtaaccattcatgaacaaa 28696338  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 36202895 - 36202978
Alignment:
Q  139 aaagttgcaatggttaaaa-gagaccatttagagaaaaggtgtaaagctttacggttgaagcaatataaccattcatgaacaaa 221  Q
    ||||||||||||||||||| |||||| |||||||||||||||||| |||| ||  ||||| |||| ||||||||||||||||||    
T  36202895 aaagttgcaatggttaaaaagagaccttttagagaaaaggtgtaatgcttgacaattgaatcaatgtaaccattcatgaacaaa 36202978  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 29006244 - 29006336
Alignment:
Q  134 attggaaagttgcaatggttaaaagagaccatttagagaaaag---gtgtaaagctttacggttgaagcaatataaccattcatgaacaaaat 223  Q
    |||| |||||||||||  |||||||||| | |||||| ||||    |||||| | |||||| |||||||||| ||||||||||||||||||||    
T  29006244 attgaaaagttgcaataattaaaagagatcttttagaaaaaaaaaagtgtaatgttttacgattgaagcaatgtaaccattcatgaacaaaat 29006336  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 50914746 - 50914667
Alignment:
Q  139 aaagttgcaatggttaaa-agagaccatttagagaaaaggtgtaaagctttacggttgaagcaatataaccattcatgaa 217  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||| |||| ||  ||||||||||  |||||||||||||    
T  50914746 aaagttgcaatggttaaatagagaccttttagagtaaaggtgtaatgcttgacaattgaagcaatgcaaccattcatgaa 50914667  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 33709598 - 33709667
Alignment:
Q  135 ttggaaagttgcaatggttaaaagagaccatt--tagagaaaaggtgtaaagctttacggttgaagcaat 202  Q
    ||||||||||||||||||||||||||||| ||  || | ||||||||||| |||||||  ||||||||||    
T  33709598 ttggaaagttgcaatggttaaaagagaccttttataaaaaaaaggtgtaatgctttacaattgaagcaat 33709667  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 12239961 - 12239877
Alignment:
Q  138 gaaagttgcaatggttaaa-agagaccatttagagaaaaggtgtaaagctttacggttgaagcaatataaccattcatgaacaaa 221  Q
    ||||||||||||||||||| | ||||| ||||| ||||| |||||  |||| ||  |||| ||||| ||||||||||||||||||    
T  12239961 gaaagttgcaatggttaaagaaagaccttttagtgaaaaagtgtattgcttgacaattgatgcaatgtaaccattcatgaacaaa 12239877  T

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