View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7680_low_37 (Length: 241)
Name: NF7680_low_37
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7680_low_37 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 33990315 - 33990538
Alignment:
| Q |
1 |
atgttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaaacttttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990315 |
atgttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaaacttttga |
33990414 |
T |
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| Q |
101 |
acacaaattcaatgaagctaaaccacctttcaagcatcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccatttagcaagttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990415 |
acacaaattcaatgaagctaaaccacctttcaagcgtcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccatttagcaagttg |
33990514 |
T |
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| Q |
201 |
aaaatggagcttataagggatggt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
33990515 |
aaaatggagcttataagggatggt |
33990538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 33950845 - 33951041
Alignment:
| Q |
1 |
atgttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaaacttttga |
100 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
33950845 |
atgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgctttataagaccagagaaattcttgagcttctcaaccatgaa-------- |
33950936 |
T |
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| Q |
101 |
acacaaattcaatgaagctaaaccacctttcaagcatcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccatttagcaagttg |
200 |
Q |
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| T |
33950937 |
-------ttcaatgaagatggacaacttttcaagcgtcctttcaatgttcctgaaaatcaaaaattcactgttgggttggatataccatttagcaagttg |
33951029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 33973490 - 33973573
Alignment:
| Q |
3 |
gttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaac |
86 |
Q |
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| T |
33973490 |
gttgttgatgagaaccaatctcttattgtaaatgatgtcgaagagacactttacaaggccagagaaattcttgagcttctcaac |
33973573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 33959486 - 33959571
Alignment:
| Q |
1 |
atgttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaac |
86 |
Q |
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| T |
33959486 |
atgttgttgatgagaaccaatctcttattgtaaatgatgttgaagaaacactttataagccaagagaaattcttgagcttctcaac |
33959571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 33973577 - 33973636
Alignment:
| Q |
153 |
gaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggagctt |
212 |
Q |
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| T |
33973577 |
gaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggagctt |
33973636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 10343 - 10556
Alignment:
| Q |
1 |
atgttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaaacttttga |
100 |
Q |
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|||| |||||||| ||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||| ||||| ||| | |||| |||||| |
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| T |
10343 |
atgtcgttgatgataaccaatctcttacggtaaatgatgttaaagagacactttacaaggccagagaaattcttgaacttcttaacaaggaaaattttga |
10442 |
T |
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| Q |
101 |
acacaaattcaatgaagctaaaccacc---tttcaagcatcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccatttagcaag |
197 |
Q |
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||| ||||| |||||| | |||||| |||||| |||||| | |||||| ||||||||| |||||| ||||||| | |||||||||||||||||| |
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| T |
10443 |
acagaaatttaatgaaaatggaccaccaatattcaagggtccttttggtgttccagaaaatccagaattcattgttgggattgatataccatttagcaag |
10542 |
T |
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| Q |
198 |
ttgaaaatggagct |
211 |
Q |
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|||||||||||||| |
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| T |
10543 |
ttgaaaatggagct |
10556 |
T |
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