View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7680_low_43 (Length: 227)
Name: NF7680_low_43
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7680_low_43 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 18096253 - 18096479
Alignment:
| Q |
1 |
cacttagtgatgtgcttttccttgtatgttggtgtaatttaatgttgaaaactagaatcatcttgtaaagaaataattcaattaattaatttttctccgt |
100 |
Q |
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| T |
18096253 |
cacttagttatgtgcttttccttgtatgttggtgaaatttaatgttgaaaactagaatcatcttgtaaagaaataattcaattaattaatttttctccgt |
18096352 |
T |
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| Q |
101 |
gtgcaggattatcatccctccagggtgcttacacttgtataccagccatttgcagttggaacacttgctatattgtcttataatgaggcaaaagtcaata |
200 |
Q |
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| T |
18096353 |
gtgcaggattatcatccctccagggtgcttacacttgtataccagccatttgcagttggaacacttgctatattgtcttataatgaggcaaaagtcaata |
18096452 |
T |
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| Q |
201 |
ctagattaaggaacctgtttggatata |
227 |
Q |
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| T |
18096453 |
ctagattaaggaacctgtttggatata |
18096479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 37853859 - 37854085
Alignment:
| Q |
1 |
cacttagtgatgtgcttttccttgtatgttggtgtaatttaatgttgaaaactagaatcatcttgtaaagaaataattcaattaattaatttttctccgt |
100 |
Q |
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| T |
37853859 |
cacttagttatgtgcttttccttgtatgttggtgaaatttaatgttgaaaactagaatcatcttgtaaagaaataattcaattaattaatttttctccgt |
37853958 |
T |
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| Q |
101 |
gtgcaggattatcatccctccagggtgcttacacttgtataccagccatttgcagttggaacacttgctatattgtcttataatgaggcaaaagtcaata |
200 |
Q |
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| T |
37853959 |
gtgcaggattatcatccctccagggtgcttacacttgtataccagccatttgcagttggaacacttgctatattgtcttataatgaggcaaaagtcaata |
37854058 |
T |
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| Q |
201 |
ctagattaaggaacctgtttggatata |
227 |
Q |
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| T |
37854059 |
ctagattaaggaacctgtttggatata |
37854085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 225
Target Start/End: Original strand, 21089880 - 21090005
Alignment:
| Q |
100 |
tgtgcaggattatcatccctccagggtgcttacacttgtataccagccatttgcagttggaacacttgctatattgtcttataatgaggcaaaagtcaat |
199 |
Q |
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| T |
21089880 |
tgtgcagaaataccatccttctagggtgcttaccattgtatatcagccatttgtatttgcaacacaagcaatattggcttacaatgaggccaaaatcagt |
21089979 |
T |
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| Q |
200 |
actagattaaggaacctgtttggata |
225 |
Q |
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|| || || |||||||||| ||||| |
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| T |
21089980 |
acaaggatacggaacctgttcggata |
21090005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 64422 - 64357
Alignment:
| Q |
100 |
tgtgcaggattatcatccctccagggtgcttacacttgtataccagccatttgcagttggaacact |
165 |
Q |
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| T |
64422 |
tgtgcagaaatatcatccctctagggtgcttactcttgtatatcagccatttgcagttggaacact |
64357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 51966 - 51913
Alignment:
| Q |
100 |
tgtgcaggattatcatccctccagggtgcttacacttgtataccagccatttgc |
153 |
Q |
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| T |
51966 |
tgtgcagaattatcatccctctagggtgcttactcttgtataccaaccatttgc |
51913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 31523619 - 31523674
Alignment:
| Q |
108 |
attatcatccctccagggtgcttacacttgtataccagccatttgcagttggaaca |
163 |
Q |
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| T |
31523619 |
attatcatccctctagggtgcttactcttgtataccaaccatttgcttttggaaca |
31523674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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