View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7680_low_46 (Length: 219)

Name: NF7680_low_46
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7680_low_46
NF7680_low_46
[»] chr4 (9 HSPs)
chr4 (27-205)||(13957432-13957611)
chr4 (18-205)||(42511455-42511641)
chr4 (71-205)||(51758703-51758838)
chr4 (30-205)||(10142341-10142506)
chr4 (73-191)||(25201539-25201657)
chr4 (99-191)||(51337817-51337910)
chr4 (18-58)||(3665316-3665356)
chr4 (17-57)||(52459201-52459241)
chr4 (17-57)||(52460458-52460498)
[»] chr7 (11 HSPs)
chr7 (18-205)||(8113644-8113833)
chr7 (71-205)||(39038378-39038513)
chr7 (71-191)||(43178728-43178848)
chr7 (121-205)||(24441777-24441862)
chr7 (110-186)||(14573995-14574071)
chr7 (33-63)||(39038797-39038827)
chr7 (33-63)||(45445942-45445972)
chr7 (99-191)||(6189239-6189332)
chr7 (99-191)||(48238625-48238718)
chr7 (99-191)||(48636868-48636961)
chr7 (18-54)||(3123876-3123912)
[»] chr5 (9 HSPs)
chr5 (18-205)||(43171136-43171322)
chr5 (73-205)||(5120642-5120778)
chr5 (108-205)||(26402143-26402241)
chr5 (71-155)||(23318168-23318251)
chr5 (18-60)||(16040066-16040108)
chr5 (99-191)||(7850480-7850573)
chr5 (18-58)||(13826093-13826133)
chr5 (18-62)||(23151592-23151636)
chr5 (18-62)||(23318534-23318578)
[»] chr2 (9 HSPs)
chr2 (18-205)||(25621624-25621812)
chr2 (18-205)||(14904210-14904398)
chr2 (73-164)||(6883516-6883607)
chr2 (71-186)||(38422399-38422514)
chr2 (71-205)||(43672754-43672889)
chr2 (92-172)||(25415681-25415763)
chr2 (99-191)||(29303342-29303435)
chr2 (33-61)||(19091059-19091087)
chr2 (71-103)||(25415782-25415814)
[»] chr3 (5 HSPs)
chr3 (18-205)||(47185151-47185339)
chr3 (137-192)||(44879474-44879529)
chr3 (33-63)||(3917997-3918027)
chr3 (18-63)||(10992948-10992993)
chr3 (99-191)||(23044732-23044825)
[»] chr6 (3 HSPs)
chr6 (18-205)||(11680587-11680775)
chr6 (71-205)||(1830920-1831055)
chr6 (99-185)||(14677904-14677990)
[»] chr8 (6 HSPs)
chr8 (18-191)||(9381946-9382116)
chr8 (71-200)||(11648230-11648360)
chr8 (92-206)||(32073432-32073546)
chr8 (121-205)||(35824166-35824251)
chr8 (71-172)||(960833-960932)
chr8 (108-184)||(24683156-24683232)
[»] scaffold0178 (1 HSPs)
scaffold0178 (29-162)||(1015-1148)
[»] chr1 (9 HSPs)
chr1 (71-156)||(12783769-12783853)
chr1 (101-204)||(5208508-5208612)
chr1 (84-203)||(47397247-47397367)
chr1 (121-205)||(12028035-12028119)
chr1 (18-106)||(5209510-5209598)
chr1 (145-204)||(12783614-12783674)
chr1 (27-79)||(12027982-12028034)
chr1 (99-191)||(36296868-36296961)
chr1 (99-191)||(42722403-42722496)
[»] scaffold0385 (1 HSPs)
scaffold0385 (157-205)||(904-953)
[»] scaffold0002 (1 HSPs)
scaffold0002 (18-61)||(98225-98268)
[»] scaffold0137 (1 HSPs)
scaffold0137 (33-63)||(21307-21337)
[»] scaffold0263 (1 HSPs)
scaffold0263 (22-63)||(18472-18513)


Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 27 - 205
Target Start/End: Original strand, 13957432 - 13957611
Alignment:
Q  27 gcatagttgaatttgataatgcaagatcatgcgagactaactcatgtatcatcataatgaacttattagagatacttatatcatataaaaagaagaatga 126  Q
    ||||| |||||||||||||||||||||||||||||||  | ||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||    
T  13957432 gcatatttgaatttgataatgcaagatcatgcgagacacattcatgtatcatcataatgaacttgttagagatacttatagcatataaaaagaggaatga 13957531  T
Q  127 tgtacttctagtatacataggagttcttgtatctatgattcctctacaaagtctaacactaa-tttgtatcatgtattat 205  Q
    ||||||||||||||||| | || |||||||||||||||||  |||| ||| ||||||||||| |||||||||||||||||    
T  13957532 tgtacttctagtatacaaatgacttcttgtatctatgatttatctaaaaactctaacactaattttgtatcatgtattat 13957611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 42511641 - 42511455
Alignment:
Q  18 gaaaggatagcatagttgaatttgataatgcaagatcatgcgagactaactcatgtatcatcataatgaacttattagagatacttatatcatataaaaa 117  Q
    |||| ||| |||||||||||||||||||||||||||||||||| ||    ||||||||||| ||||||||||| |||||||||||| || ||||||||||    
T  42511641 gaaatgattgcatagttgaatttgataatgcaagatcatgcgaaacacgttcatgtatcattataatgaacttgttagagatacttctaacatataaaaa 42511542  T
Q  118 gaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctctacaaagtctaacactaa-tttgtatcatgtattat 205  Q
    || ||||||||||||||||||||||| | |||||||||| |||||||||| |||| ||||  ||||||||| |||||||||||||||||    
T  42511541 gaggaatgatgtacttctagtatacaaaagagttcttgtgtctatgattcttctaaaaag--taacactaattttgtatcatgtattat 42511455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 71 - 205
Target Start/End: Original strand, 51758703 - 51758838
Alignment:
Q  71 tgtatcatcataatgaacttattagagatacttatatcatataaaaagaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctc 170  Q
    ||||||||| |||| ||||| ||| |||||||||||||||||||||||  |||||||||||||| || | ||| ||||||||||||||||  |||| |||    
T  51758703 tgtatcatcgtaataaacttgttaaagatacttatatcatataaaaagcggaatgatgtacttcaagcaaacaaaggagttcttgtatcttagattactc 51758802  T
Q  171 tacaaagtctaacactaa-tttgtatcatgtattat 205  Q
    || ||||||||||||||| |||||||||||||||||    
T  51758803 taaaaagtctaacactaattttgtatcatgtattat 51758838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 30 - 205
Target Start/End: Original strand, 10142341 - 10142506
Alignment:
Q  30 tagttgaatttgataatgcaagatcatgcgagactaactcatgtatcatcataatgaacttattagagatacttatatcatataaaaagaagaatgatgt 129  Q
    ||||||| ||| ||||| |||||||||| |||||  | ||||||||||    ||||||||| |||||||||||||||       |||||| |||| ||||    
T  10142341 tagttgattttaataatccaagatcatgggagacacattcatgtatca----aatgaacttgttagagatacttata-------aaaagaggaatcatgt 10142429  T
Q  130 acttctagtatacataggagttcttgtatctatgattcctctacaaagtctaacactaa-tttgtatcatgtattat 205  Q
    || ||||||||||| |||||||| |||||||||||||||| || ||||||||||||||| |||||||||||||||||    
T  10142430 acatctagtatacaaaggagttcatgtatctatgattcctttaaaaagtctaacactaattttgtatcatgtattat 10142506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 73 - 191
Target Start/End: Original strand, 25201539 - 25201657
Alignment:
Q  73 tatcatcataatgaacttattagagatacttatatcatataaaaagaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctcta 172  Q
    ||||||||||||| |||| ||||| ||||||||   ||||||| ||| |||||||||||||||   ||||| ||||||||||| || ||||||| |||||    
T  25201539 tatcatcataatggacttgttagaaatacttatggtatataaagagaggaatgatgtacttcttacatacaaaggagttcttgcatttatgatttctcta 25201638  T
Q  173 caaagtctaacactaattt 191  Q
     ||||||||||||||||||    
T  25201639 aaaagtctaacactaattt 25201657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 51337817 - 51337910
Alignment:
Q  99 tacttatatcatataaaaagaagaatgatgtacttctagtat-acataggagttcttgtatctatgattcctctacaaagtctaacactaattt 191  Q
    |||||||| |||||||||||| ||||||| || || |||||| ||| | ||||| ||||||||  |||| ||||| ||| | ||||||||||||    
T  51337817 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattt 51337910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 3665356 - 3665316
Alignment:
Q  18 gaaaggatagcatagttgaatttgataatgcaagatcatgc 58  Q
    |||||||| ||| | ||||||||||||||||||||||||||    
T  3665356 gaaaggattgcaaaattgaatttgataatgcaagatcatgc 3665316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 52459201 - 52459241
Alignment:
Q  17 agaaaggatagcatagttgaatttgataatgcaagatcatg 57  Q
    ||||||||| ||| | |||||||||||||||||||||||||    
T  52459201 agaaaggattgcagaattgaatttgataatgcaagatcatg 52459241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 52460458 - 52460498
Alignment:
Q  17 agaaaggatagcatagttgaatttgataatgcaagatcatg 57  Q
    ||||||||| ||| | |||||||||||||||||||||||||    
T  52460458 agaaaggattgcagaattgaatttgataatgcaagatcatg 52460498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 3e-53; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 8113833 - 8113644
Alignment:
Q  18 gaaaggatagcatagttgaatttgataatgcaagatcatgcgagactaactcatgtatcatcataatgaacttattagagatacttatatcatataaaaa 117  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||  | ||||||||||||||||||||||| |||||||||  |||| |||||||||     
T  8113833 gaaaggattgcatagttgaatttgataatggaagatcatgcgagacacattcatgtatcatcataatgaacttgttagagatatctataacatataaaag 8113734  T
Q  118 gaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctct-acaaagtctaacactaa-tttgtatcatgtattat 205  Q
     |||||||||||||||||| |||||| ||||  ||||||||| ||||||||||| | ||||||||||||||| |||||||||||||||||    
T  8113733 taagaatgatgtacttctactatacaaaggaactcttgtatcgatgattcctctaaaaaagtctaacactaattttgtatcatgtattat 8113644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 71 - 205
Target Start/End: Complemental strand, 39038513 - 39038378
Alignment:
Q  71 tgtatcatcataatgaacttattagagatacttatatcatataaaaagaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctc 170  Q
    |||||||||||||| ||||| ||||||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||| || ||| || ||||||||    
T  39038513 tgtatcatcataataaacttgttagagatacttataacatataaaaagaggaatgatgtacttctagcatacaaaggagtttttctatatacgattcctc 39038414  T
Q  171 tacaaagtctaacactaa-tttgtatcatgtattat 205  Q
    || ||||||||||||||| |||||||||||||||||    
T  39038413 taaaaagtctaacactaattttgtatcatgtattat 39038378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 71 - 191
Target Start/End: Complemental strand, 43178848 - 43178728
Alignment:
Q  71 tgtatcatcataatgaacttattagagatacttatatcatataaaaagaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctc 170  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||||||  |||||||||||||||| ||||| |||||||||||||| | |||||||||    
T  43178848 tgtatcatcataatgaatttggtagagatacttatatcatataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctc 43178749  T
Q  171 tacaaagtctaacactaattt 191  Q
    || ||||||||||||||||||    
T  43178748 taaaaagtctaacactaattt 43178728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 205
Target Start/End: Complemental strand, 24441862 - 24441777
Alignment:
Q  121 gaatgatgtacttctagtatacataggagttcttgtatctatgattcctctacaaagtctaacactaa-tttgtatcatgtattat 205  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||||||||||| ||||| ||||| ||| |||||||||||||||||    
T  24441862 gaatgatatacttctagtatacaaaggagttcttgtgtctatgattcctctaaaaagtttaacaataattttgtatcatgtattat 24441777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 14573995 - 14574071
Alignment:
Q  110 tataaaaagaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctctacaaagtctaacact 186  Q
    |||||||||||||||||||||||| ||   || | |||||||||||  ||| ||||||||||  |||||||||||||    
T  14573995 tataaaaagaagaatgatgtacttgtaacgtataaaggagttcttgcctctttgattcctctgaaaagtctaacact 14574071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 63
Target Start/End: Complemental strand, 39038827 - 39038797
Alignment:
Q  33 ttgaatttgataatgcaagatcatgcgagac 63  Q
    |||||||||||||||||||||||||||||||    
T  39038827 ttgaatttgataatgcaagatcatgcgagac 39038797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 63
Target Start/End: Complemental strand, 45445972 - 45445942
Alignment:
Q  33 ttgaatttgataatgcaagatcatgcgagac 63  Q
    |||||||||||||||||||||||||||||||    
T  45445972 ttgaatttgataatgcaagatcatgcgagac 45445942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 6189332 - 6189239
Alignment:
Q  99 tacttatatcatataaaaagaagaatgatgtacttctagtat-acataggagttcttgtatctatgattcctctacaaagtctaacactaattt 191  Q
    |||||||| |||||||||||| ||||||| || || |||||| ||| | ||||| ||||||||  |||| ||||| ||| | ||||||||||||    
T  6189332 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattt 6189239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 48238625 - 48238718
Alignment:
Q  99 tacttatatcatataaaaagaagaatgatgtacttctagtat-acataggagttcttgtatctatgattcctctacaaagtctaacactaattt 191  Q
    |||||||| |||||||||||| ||||||| || || |||||| ||| | ||||| ||||||||  |||| ||||| ||| | ||||||||||||    
T  48238625 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattt 48238718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 48636868 - 48636961
Alignment:
Q  99 tacttatatcatataaaaagaagaatgatgtacttctagtat-acataggagttcttgtatctatgattcctctacaaagtctaacactaattt 191  Q
    |||||||| |||||||||||| ||||||| || || |||||| ||| | ||||| ||||||||  |||| ||||| ||| | ||||||||||||    
T  48636868 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattt 48636961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 3123912 - 3123876
Alignment:
Q  18 gaaaggatagcatagttgaatttgataatgcaagatc 54  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  3123912 gaaaggattgcataattgaatttgataatgcaagatc 3123876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 43171322 - 43171136
Alignment:
Q  18 gaaaggatagcatagttgaatttgataatgcaagatcatgcgagactaactcatgtatcatcataatgaacttattagagatacttatatcatataaaaa 117  Q
    |||| ||| |||||||| ||||||||||||||||||||||||||||  | | | |||||||||||||||||||  ||||||||| |||| ||||||||||    
T  43171322 gaaatgattgcatagttaaatttgataatgcaagatcatgcgagacacatttacgtatcatcataatgaactt--tagagatacctataacatataaaaa 43171225  T
Q  118 gaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctctacaaagtctaacactaa-tttgtatcatgtattat 205  Q
     | |||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||    
T  43171224 aaggaatgatgtacttctagtgtacaaaggagttcttgtatttatgattcctctacaaagtctaacactaattttgtattatgtattat 43171136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 5120778 - 5120642
Alignment:
Q  73 tatcatcataatgaacttattagagatacttatatcatataaaaagaagaatgatgtacttctagtatacatagg---agttcttgtatctatgattcct 169  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| ||||| | |   ||||||||||||||||||||||    
T  5120778 tatcattataatgaacttgttagagatacttatatcatataaaaagaggaatggtgtacttctagcatacaaatgatcagttcttgtatctatgattcct 5120679  T
Q  170 ctacaaagtctaacactaa-tttgtatcatgtattat 205  Q
     || ||| ||||||||||| |||||||||||||||||    
T  5120678 ttaaaaactctaacactaattttgtatcatgtattat 5120642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 26402143 - 26402241
Alignment:
Q  108 catataaaaagaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctctacaaagtctaacactaat-ttgtatcatgtattat 205  Q
    |||||||||||||||||||| ||||||||| ||||| ||||||||||||| |||||||| ||||| ||||| |||||||||| ||||||||||||||||    
T  26402143 catataaaaagaagaatgatatacttctagaatacaaaggagttcttgtacctatgatttctctaaaaagtgtaacactaatgttgtatcatgtattat 26402241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 23318251 - 23318168
Alignment:
Q  71 tgtatcatcataatgaacttattagagatacttatatcatataaaaagaagaatgatgtacttctagtatacataggagttcttg 155  Q
    ||||| |||||||||||||| ||| |||||||||||  ||||||||||| ||||||||||||||||  ||||| |||||||||||    
T  23318251 tgtataatcataatgaacttgttaaagatacttatagtatataaaaagaggaatgatgtacttctaacataca-aggagttcttg 23318168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 16040108 - 16040066
Alignment:
Q  18 gaaaggatagcatagttgaatttgataatgcaagatcatgcga 60  Q
    |||||||| ||| | ||||||||||||||||||||||||||||    
T  16040108 gaaaggattgcagaattgaatttgataatgcaagatcatgcga 16040066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 7850480 - 7850573
Alignment:
Q  99 tacttatatcatataaaaagaagaatgatgtacttctagtat-acataggagttcttgtatctatgattcctctacaaagtctaacactaattt 191  Q
    |||||||| |||||||||||| ||||||| || || |||||| ||| | ||||| ||||||||  |||| ||||| ||| | ||||||||||||    
T  7850480 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattt 7850573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 13826133 - 13826093
Alignment:
Q  18 gaaaggatagcatagttgaatttgataatgcaagatcatgc 58  Q
    ||||||||  |||| ||||||||||||||||||||||||||    
T  13826133 gaaaggatttcataattgaatttgataatgcaagatcatgc 13826093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 23151592 - 23151636
Alignment:
Q  18 gaaaggatagcatagttgaatttgataatgcaagatcatgcgaga 62  Q
    |||||||| ||| | |||||||||||| |||||||||||||||||    
T  23151592 gaaaggattgcaaaattgaatttgatattgcaagatcatgcgaga 23151636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 23318578 - 23318534
Alignment:
Q  18 gaaaggatagcatagttgaatttgataatgcaagatcatgcgaga 62  Q
    |||||||| ||||  |||||||||||||||||| |||||||||||    
T  23318578 gaaaggattgcatgattgaatttgataatgcaaaatcatgcgaga 23318534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 25621624 - 25621812
Alignment:
Q  18 gaaaggatagcatagttgaatttgataatgcaagatcatgcgagactaactcatgtatcatcataatgaacttattagagatacttatatcatataaaaa 117  Q
    ||||| || |||||||||||||||||||||||||||||||||||||  | ||||||||||| |||||||| || |||||||||  ||||||||| |||||    
T  25621624 gaaagaattgcatagttgaatttgataatgcaagatcatgcgagacacattcatgtatcattataatgaagttgttagagatatgtatatcatagaaaaa 25621723  T
Q  118 gaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctctacaaagtctaacactaa-tttgtatcatgtattat 205  Q
    || |||||||||||||| |||||||| | ||||| |||||| ||||||||||||| || |||||||||||| |||||||||||||||||    
T  25621724 gaggaatgatgtacttccagtatacaaatgagttattgtatttatgattcctctaaaaggtctaacactaattttgtatcatgtattat 25621812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 14904210 - 14904398
Alignment:
Q  18 gaaaggatagcatagttgaatttgataatgcaagatcatgcgagactaactcatgtatcatcataatgaacttattagagatacttatatcatataaaaa 117  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||  | || |||||||||||||||||||| ||||||||||||||| ||||||||||    
T  14904210 gaaaggattgcatggttgaatttgataatgcaagatcatgcgagacacattcgtgtatcatcataatgaacttgttagagatacttataacatataaaaa 14904309  T
Q  118 gaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctctacaaagtctaacactaa-tttgtatcatgtattat 205  Q
    || || |||| ||||| ||||||| | | ||||| |||| |||||||||| |||| ||| ||||||| ||| |||||||||||||||||    
T  14904310 gaggagtgatatacttatagtatataaatgagttattgtttctatgattcttctaaaaaatctaacaataattttgtatcatgtattat 14904398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 6883516 - 6883607
Alignment:
Q  73 tatcatcataatgaacttattagagatacttatatcatataaaaagaagaatgatgtacttctagtatacataggagttcttgtatctatga 164  Q
    |||||||||||||||||| |||||||||||| || |||||||||||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  6883516 tatcatcataatgaacttgttagagatacttgtagcatataaaaagaggaatgatgtacttttagtatacaaatgagttcttgtatctatga 6883607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 38422514 - 38422399
Alignment:
Q  71 tgtatcatcataatgaacttattagagatacttatatcatataaaaagaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctc 170  Q
    |||||||||| |||||||||  ||||||||||| || |||||||||||| ||||||||||||| ||  ||| | ||||||||| |||||| |||||| ||    
T  38422514 tgtatcatcacaatgaacttgatagagatacttgtagcatataaaaagaggaatgatgtacttgtaacatataaaggagttctagtatctttgattcttc 38422415  T
Q  171 tacaaagtctaacact 186  Q
    || |||||||||||||    
T  38422414 taaaaagtctaacact 38422399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 205
Target Start/End: Complemental strand, 43672889 - 43672754
Alignment:
Q  71 tgtatcatcataatgaacttattagagatacttatatcatataaaaagaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctc 170  Q
    |||||||||| |||||| ||  |||| ||||||  | |||||||||||| ||||||||||||| ||  ||| | |||||||   |||||| |||||||||    
T  43672889 tgtatcatcacaatgaatttgatagaaatacttgcagcatataaaaagaggaatgatgtacttgtaacatataaaggagttacggtatctttgattcctc 43672790  T
Q  171 tacaaagtctaacact-aatttgtatcatgtattat 205  Q
    || ||||||||| ||| | ||||||||| |||||||    
T  43672789 taaaaagtctaatactgattttgtatcaagtattat 43672754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 25415763 - 25415681
Alignment:
Q  92 ttagagatacttatatcatataaaaagaagaatg--atgtacttctagtatacataggagttcttgtatctatgattcctcta 172  Q
    ||||||||||||||  |||||||||||| |||||  ||||||||||   ||||| ||||||| |||||| ||| |||||||||    
T  25415763 ttagagatacttatcgcatataaaaagatgaatgatatgtacttctctcatacaaaggagtttttgtatttataattcctcta 25415681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 29303342 - 29303435
Alignment:
Q  99 tacttatatcatataaaaagaagaatgatgtacttctagtat-acataggagttcttgtatctatgattcctctacaaagtctaacactaattt 191  Q
    |||||||| |||||||||||| ||||||| || || |||||| ||| | ||||| ||||||||  |||| ||||| ||| | ||||||||||||    
T  29303342 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattt 29303435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 19091087 - 19091059
Alignment:
Q  33 ttgaatttgataatgcaagatcatgcgag 61  Q
    |||||||||||||||||||||||||||||    
T  19091087 ttgaatttgataatgcaagatcatgcgag 19091059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 25415814 - 25415782
Alignment:
Q  71 tgtatcatcataatgaacttattagagatactt 103  Q
    |||||||||||||||||||| ||||||||||||    
T  25415814 tgtatcatcataatgaacttgttagagatactt 25415782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 47185151 - 47185339
Alignment:
Q  18 gaaaggatagcatagttgaatttgataatgcaagatcatgcgagactaactcatgtatcatcataatgaacttattagagatacttatatcatataaaaa 117  Q
    |||| ||| |||||||||||||||||| | ||| |||||| |||||  | ||||||||||||| ||||||||| ||||||||||||||| ||||||||||    
T  47185151 gaaatgattgcatagttgaatttgatagtacaaaatcatgtgagacacattcatgtatcatcacaatgaacttgttagagatacttatagcatataaaaa 47185250  T
Q  118 gaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctctacaaagtctaacactaa-tttgtatcatgtattat 205  Q
    ||  |||||||||||| || | |||| | |||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||    
T  47185251 gagaaatgatgtacttataatgtacaaaagagttcttgtatctatgattcctctaaaaagtctaacactaattttgtatcatgaattat 47185339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 44879474 - 44879529
Alignment:
Q  137 gtatacataggagttcttgtatctatgattcctctacaaagtctaacactaatttg 192  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  44879474 gtatacaaaggagttcttgtatctatgattcctctaaaaagtctaacactaatttg 44879529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 63
Target Start/End: Complemental strand, 3918027 - 3917997
Alignment:
Q  33 ttgaatttgataatgcaagatcatgcgagac 63  Q
    |||||||||||||||||||||||||||||||    
T  3918027 ttgaatttgataatgcaagatcatgcgagac 3917997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 10992993 - 10992948
Alignment:
Q  18 gaaaggatagcatagttgaatttgataatgcaagatcatgcgagac 63  Q
    |||||||| ||| | |||||||||||| ||||||||||||||||||    
T  10992993 gaaaggattgcaaaattgaatttgatattgcaagatcatgcgagac 10992948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 23044825 - 23044732
Alignment:
Q  99 tacttatatcatataaaaagaagaatgatgtacttctagtat-acataggagttcttgtatctatgattcctctacaaagtctaacactaattt 191  Q
    |||||||| |||||||||||| ||||||| || || |||||| ||| | ||||| ||||||||  |||| ||||| ||| | ||||||||||||    
T  23044825 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattt 23044732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 11680775 - 11680587
Alignment:
Q  18 gaaaggatagcatagttgaatttgataatgcaagatcatgcgagactaactcatgtatcatcataatgaacttattagagatacttatatcatataaaaa 117  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||  | ||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  11680775 gaaaggattgcatagttgaatttgataatgcaagatcatgctagacacattcatgtatcatcataatgaacttgttagagatacttatagcatataaaaa 11680676  T
Q  118 gaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctctacaaagtctaacactaa-tttgtatcatgtattat 205  Q
    ||  ||||||||||||||||||||    ||||||  | | |||| |||||||| | ||||||||||| ||| ||||||||| |||||||    
T  11680675 gagtaatgatgtacttctagtatattatggagttactctgtctaagattcctcaaaaaagtctaacaataattttgtatcaagtattat 11680587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 205
Target Start/End: Original strand, 1830920 - 1831055
Alignment:
Q  71 tgtatcatcataatgaacttattagagatacttatatcatataaaaagaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctc 170  Q
    ||||||||||||||||||||  |||| ||||||||| |||||||||||| |||||||| |||||||| ||||| ||||| ||||||||   ||||| |||    
T  1830920 tgtatcatcataatgaacttgctagaaatacttataacatataaaaagatgaatgatgcacttctagcatacaaaggagctcttgtattattgattactc 1831019  T
Q  171 tacaaagtctaacactaa-tttgtatcatgtattat 205  Q
    || ||||||||| ||||| |||||||||||||||||    
T  1831020 taaaaagtctaaaactaattttgtatcatgtattat 1831055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 14677904 - 14677990
Alignment:
Q  99 tacttatatcatataaaaagaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctctacaaagtctaacac 185  Q
    ||||| || |||||||||||| ||||||| || || ||||||||| | ||||| ||||||||  |||| ||||| ||| ||||||||    
T  14677904 tacttgtagcatataaaaagaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaattctaacac 14677990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 9382116 - 9381946
Alignment:
Q  18 gaaaggatagcatagttgaatttgataatgcaagatcatgcgagactaactcatgtatcatcataatgaacttattagagatacttatatcatataaaaa 117  Q
    ||||| || |||||||| ||||||||||| ||||||||||||||||  | ||||||||||||||||||||||| ||||   ||| | || ||||||||||    
T  9382116 gaaagtattgcatagttaaatttgataat-caagatcatgcgagacacattcatgtatcatcataatgaacttgttagc--tacctgtagcatataaaaa 9382020  T
Q  118 gaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctctacaaagtctaacactaattt 191  Q
     |||||||||||||||||| |||||| | |||||||||||||||||||||||||| ||||||||||||||||||    
T  9382019 taagaatgatgtacttctaatatacaaaagagttcttgtatctatgattcctctaaaaagtctaacactaattt 9381946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 200
Target Start/End: Complemental strand, 11648360 - 11648230
Alignment:
Q  71 tgtatcatcataatgaacttattagagatacttatatcatataaaaagaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctc 170  Q
    |||||||| ||||||||||| |||||||||||||||   |||||||||| |||||||||| |||||| ||||| ||||||| ||||||||||||||||||    
T  11648360 tgtatcattataatgaacttgttagagatacttatagtttataaaaagaggaatgatgtatttctagcatacaaaggagttattgtatctatgattcctc 11648261  T
Q  171 tacaaagtctaacactaa-tttgtatcatgt 200  Q
    || | |||| |||||||| ||||||||||||    
T  11648260 taaagagtcaaacactaattttgtatcatgt 11648230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 32073432 - 32073546
Alignment:
Q  92 ttagagatacttatatcatataaaaagaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctctacaaagtctaacactaa-tt 190  Q
    ||||||||||||| | |||||||||| | | ||||||||||||||| ||||| | ||||| |||||||||||||||||||| |||||||||| |||| ||    
T  32073432 ttagagatacttaaagcatataaaaa-agggatgatgtacttctagcatacaaatgagtttttgtatctatgattcctctaaaaagtctaactctaactt 32073530  T
Q  191 tgtatcatgtattata 206  Q
    |||||| |||||||||    
T  32073531 tgtatcttgtattata 32073546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 35824166 - 35824251
Alignment:
Q  121 gaatgatgtacttctagtatacataggagttcttgtatctatgattcctctacaaagtctaacactaa-tttgtatcatgtattat 205  Q
    ||||||||||||||| ||||||| |||| ||||| ||||||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  35824166 gaatgatgtacttctggtatacaaaggatttcttttatctatgattcctctaaaaagtttaacactaattttgtatcatgtattat 35824251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 71 - 172
Target Start/End: Complemental strand, 960932 - 960833
Alignment:
Q  71 tgtatcatcataatgaacttattagagatacttatatcatataaaaagaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctc 170  Q
    |||||||||||||||||||| ||||  ||  ||||| |||||||||||| ||||||  ||||| ||| ||||| | ||||||||||||||||||||||||    
T  960932 tgtatcatcataatgaacttgttagctatgtttataacatataaaaagaggaatga--tacttatagcatacaaatgagttcttgtatctatgattcctc 960835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 24683156 - 24683232
Alignment:
Q  108 catataaaaagaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctctacaaagtctaaca 184  Q
    |||||||||||| ||||||| ||||| ||| ||||| | ||||||||||||||  |||| ||||| |||||||||||    
T  24683156 catataaaaagaggaatgatttacttgtagcatacaaatgagttcttgtatcttagattactctaaaaagtctaaca 24683232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 1148 - 1015
Alignment:
Q  29 atagttgaatttgataatgcaagatcatgcgagactaactcatgtatcatcataatgaacttattagagatacttatatcatataaaaagaagaatgatg 128  Q
    |||||||||||||||||| ||||||||||| | ||  | ||||||||||||||||||||||| ||||||||| ||||| |||||||||||| ||| ||||    
T  1148 atagttgaatttgataatacaagatcatgcaatacacattcatgtatcatcataatgaacttgttagagataattatagcatataaaaagaggaacgatg 1049  T
Q  129 tacttctagtatacataggagttcttgtatctat 162  Q
    ||||||||||||||| | ||||||||||||||||    
T  1048 tacttctagtatacaaaagagttcttgtatctat 1015  T

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Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 12783853 - 12783769
Alignment:
Q  71 tgtatcatcataatgaacttattagagatacttatatcatataaaaagaagaatgatgtacttctagtatacataggagttcttgt 156  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||||||||    
T  12783853 tgtatcatcataatgaacttgttagagatacttatagcatataaaaagaggaatgatgtacttctaggataca-aggagttcttgt 12783769  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 5208612 - 5208508
Alignment:
Q  101 cttatatcatataaaaagaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctctacaaagtctaacactaa-tttgtatcatg 199  Q
    |||||| ||||||||||| ||||||||| |||||||||||||  | |||||||||||||||||||| ||||| ||||||||||||||| ||||||||||     
T  5208612 cttataacatataaaaagcagaatgatgcacttctagtatacgaatgagttcttgtatctatgatttctctaaaaagtctaacactaattttgtatcata 5208513  T
Q  200 tatta 204  Q
    |||||    
T  5208512 tatta 5208508  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 84 - 203
Target Start/End: Complemental strand, 47397367 - 47397247
Alignment:
Q  84 tgaacttattagagatacttatatcatataaaaagaagaatgatgtacttctagtatacataggagttcttgtatctatgattcctctacaaagtctaac 183  Q
    ||||||| ||||||||||||||| |||||||| ||| ||||||||| ||||||| ||| | ||||||| |||||| ||||||||||||| ||||| |||     
T  47397367 tgaacttgttagagatacttatagcatataaagagaggaatgatgtccttctagcatataaaggagttattgtatttatgattcctctaaaaagtgtaaa 47397268  T
Q  184 actaa-tttgtatcatgtatt 203  Q
    ||||| |||||||||||||||    
T  47397267 actaattttgtatcatgtatt 47397247  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 12028035 - 12028119
Alignment:
Q  121 gaatgatgtacttctagtatacataggagttcttgtatctatgattcctctacaaagtctaacactaa-tttgtatcatgtattat 205  Q
    |||||||||| |||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  12028035 gaatgatgtatttcttgtatacaaaggagttcttgtatctatgattcctcta-aaagtctaacactaattttgtatcatgtattat 12028119  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 5209598 - 5209510
Alignment:
Q  18 gaaaggatagcatagttgaatttgataatgcaagatcatgcgagactaactcatgtatcatcataatgaacttattagagatacttata 106  Q
    |||||||| |||| || |||||||||||||||||||||||||||||  | |||| |||||||| ||| ||||| ||| |||||||||||    
T  5209598 gaaaggattgcatggtcgaatttgataatgcaagatcatgcgagacacattcatttatcatcacaattaacttgttatagatacttata 5209510  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 12783674 - 12783614
Alignment:
Q  145 aggagttcttgtatctatgattcctctacaaagtctaacactaa-tttgtatcatgtatta 204  Q
    |||||||||||||||||||||||||||| |||||||| |||||| |||||||||| |||||    
T  12783674 aggagttcttgtatctatgattcctctaaaaagtctaccactaattttgtatcatatatta 12783614  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 12027982 - 12028034
Alignment:
Q  27 gcatagttgaatttgataatgcaagatcatgcgagactaactcatgtatcatc 79  Q
    |||||||| |||||||||||||||||| |||||||||  | ||||||||||||    
T  12027982 gcatagttaaatttgataatgcaagattatgcgagacacattcatgtatcatc 12028034  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 36296868 - 36296961
Alignment:
Q  99 tacttatatcatataaaaagaagaatgatgtacttctagtat-acataggagttcttgtatctatgattcctctacaaagtctaacactaattt 191  Q
    |||||||| |||||||||||| ||||||| || || |||||| ||| | ||||| ||||||||  |||| ||||| ||| | ||||||||||||    
T  36296868 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattt 36296961  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 42722403 - 42722496
Alignment:
Q  99 tacttatatcatataaaaagaagaatgatgtacttctagtat-acataggagttcttgtatctatgattcctctacaaagtctaacactaattt 191  Q
    |||||||| |||||||||||| ||||||| || || |||||| ||| | ||||| ||||||||  |||| ||||| ||| | ||||||||||||    
T  42722403 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattt 42722496  T

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Target: scaffold0385 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 904 - 953
Alignment:
Q  157 atctatgattcctctacaaagtctaacactaa-tttgtatcatgtattat 205  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  904 atctatgattcctctaaaaagtctaacactaattttgtatcatgtattat 953  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 98268 - 98225
Alignment:
Q  18 gaaaggatagcatagttgaatttgataatgcaagatcatgcgag 61  Q
    |||||||| ||| | |||||||||||||||||||||||||||||    
T  98268 gaaaggattgcaaatttgaatttgataatgcaagatcatgcgag 98225  T

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Target: scaffold0137 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 63
Target Start/End: Complemental strand, 21337 - 21307
Alignment:
Q  33 ttgaatttgataatgcaagatcatgcgagac 63  Q
    |||||||||||||||||||||||||||||||    
T  21337 ttgaatttgataatgcaagatcatgcgagac 21307  T

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Target: scaffold0263 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 18513 - 18472
Alignment:
Q  22 ggatagcatagttgaatttgataatgcaagatcatgcgagac 63  Q
    |||| ||||| ||||||||||||||| |||||||||||||||    
T  18513 ggattgcatatttgaatttgataatgaaagatcatgcgagac 18472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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