View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7680_low_49 (Length: 209)
Name: NF7680_low_49
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7680_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 43275387 - 43275209
Alignment:
| Q |
13 |
gagaagaagaagtaggtttaatgatggagaaaataaagcactattcttctaaatcattacctgtgaatataagtgaattagcctccaaaattactaatga |
112 |
Q |
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| T |
43275387 |
gagaggaagaagtaggtttaatgatggagaaaataaagcactattcttctaaatcattacctgtgaatataagtgaattagcctccaaaattactaatga |
43275288 |
T |
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| Q |
113 |
tatagtttgtagggttgctttaggaagaaaatatgatggtgaaagtggaaagggatttaagaagttgttgagggaattt |
191 |
Q |
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| T |
43275287 |
tatagtttgtagggttgctttaggaagaaaatatgatggtgaaagtggaaagggatttaagaagttgttgagggaattt |
43275209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 43311088 - 43310923
Alignment:
| Q |
13 |
gagaagaagaagtaggtttaatgatggagaaaataaagcactattcttctaaatcattacctgtgaatataagtgaattagcctccaaaattactaatga |
112 |
Q |
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| T |
43311088 |
gagaggaagaaattggtttaatgatggagaaaataaaccattgttgttccacatctttacccgtgaatataagtgatttactctccacaactatcaatga |
43310989 |
T |
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| Q |
113 |
tatagtttgtagggttgctttaggaagaaaatatgatggtgaaagtggaaagggatttaagaagtt |
178 |
Q |
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| T |
43310988 |
tatagtttgtagggttgctttggggagaaagtatagtggtgaaagtgggaagggatttaaaaagtt |
43310923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 43268486 - 43268340
Alignment:
| Q |
27 |
ggtttaatgatggagaaaataaagcactattcttct---aaatcattacctgtgaatataagtgaattagcctccaaaattactaatgatatagtttgta |
123 |
Q |
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| T |
43268486 |
ggtttaatgatggagaaaataaagcactgttcttcttccacttcattaccagcgaatttaagtgaattaatggcaacaactacgaatgatatagtttgta |
43268387 |
T |
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| Q |
124 |
gggttgctttaggaagaaaatatgatggtgaaagtggaaagggattt |
170 |
Q |
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| T |
43268386 |
gggttgttttgggaagaaagtatagtggtgaaaatgggaagggattt |
43268340 |
T |
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