View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7680_low_5 (Length: 690)

Name: NF7680_low_5
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7680_low_5
NF7680_low_5
[»] chr8 (8 HSPs)
chr8 (16-350)||(33168550-33168884)
chr8 (472-672)||(33168231-33168431)
chr8 (472-672)||(17315224-17315424)
chr8 (472-672)||(17337135-17337335)
chr8 (503-638)||(13539710-13539845)
chr8 (503-638)||(13684629-13684764)
chr8 (476-628)||(27933191-27933343)
chr8 (476-549)||(9798390-9798462)
[»] chr3 (16 HSPs)
chr3 (472-630)||(12881076-12881234)
chr3 (533-672)||(31139299-31139436)
chr3 (484-649)||(11271432-11271596)
chr3 (540-631)||(4863905-4863996)
chr3 (476-653)||(6013964-6014143)
chr3 (197-292)||(4850318-4850413)
chr3 (584-637)||(8890630-8890683)
chr3 (602-657)||(4847019-4847074)
chr3 (476-547)||(13833019-13833089)
chr3 (188-291)||(6017874-6017981)
chr3 (197-246)||(11271189-11271238)
chr3 (601-649)||(4284996-4285044)
chr3 (634-672)||(8890730-8890768)
chr3 (188-245)||(6013674-6013735)
chr3 (601-653)||(6018290-6018342)
chr3 (476-556)||(6020305-6020385)
[»] chr4 (6 HSPs)
chr4 (474-672)||(15154464-15154662)
chr4 (485-663)||(31371615-31371796)
chr4 (485-649)||(10520324-10520488)
chr4 (480-643)||(15048073-15048236)
chr4 (480-643)||(15106188-15106351)
chr4 (601-644)||(53000317-53000360)
[»] chr6 (1 HSPs)
chr6 (472-638)||(28973941-28974107)
[»] chr2 (5 HSPs)
chr2 (472-642)||(8172789-8172958)
chr2 (474-672)||(24185203-24185401)
chr2 (493-587)||(16917812-16917904)
chr2 (485-576)||(31603483-31603575)
chr2 (485-584)||(21511811-21511910)
[»] chr1 (8 HSPs)
chr1 (496-672)||(28553412-28553591)
chr1 (472-638)||(15918040-15918206)
chr1 (475-672)||(37627453-37627645)
chr1 (476-588)||(12788717-12788829)
chr1 (206-292)||(15917775-15917861)
chr1 (181-231)||(12788407-12788457)
chr1 (473-576)||(8236350-8236453)
chr1 (204-256)||(14601438-14601490)
[»] chr7 (5 HSPs)
chr7 (505-672)||(10234701-10234869)
chr7 (486-672)||(9046272-9046459)
chr7 (601-666)||(23395001-23395066)
chr7 (484-537)||(14545537-14545590)
chr7 (473-549)||(6847746-6847821)
[»] chr5 (2 HSPs)
chr5 (474-612)||(12685682-12685817)
chr5 (472-672)||(26266456-26266657)
[»] scaffold0003 (2 HSPs)
scaffold0003 (494-551)||(356806-356863)
scaffold0003 (195-228)||(357130-357163)


Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 33168884 - 33168550
Alignment:
Q  16 atcaacaaaaaagccataaagcaacagcacggtcgtgcacccctttctttagatcgtgcgtaggagaaccgtgccaacacgcacgactgtgtgcctcata 115  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33168884 atcaacgaaaaagccataaagcaacagcacggtcgtgcacccctttctttagatcgtgcgtaggagaaccgtgccaacacgcacgactgtgtgcctcaca 33168785  T
Q  116 agcacgctcgtgcgcccttccagccaacataatttcaacagttttttaaggcaaacacaatcgtgtgtcctatgcagttagaaatagttgttacaaactc 215  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33168784 agcacgctcgtgcgcccttccagccagcataatttcaacagtttttcaaggcaaacacaatcatgtgtcctatgcagttagaaatagttgttacaaactc 33168685  T
Q  216 ttagaattctttagttattgactagtaactcatttttaatgtattctcttaggttttagactataaatatacctcacatcccagccgaaagggcatctta 315  Q
     |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||    
T  33168684 atagaattctttaattattgactagtaactcatttttaatgtattctcttaggttttagactataaatatgtctcacatcccagccaaaagggcatctta 33168585  T
Q  316 gaaactagtaatcttggtataaagtggaaatcaaa 350  Q
    |||||||||||||||||||||||||||||||||||    
T  33168584 gaaactagtaatcttggtataaagtggaaatcaaa 33168550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 472 - 672
Target Start/End: Complemental strand, 33168431 - 33168231
Alignment:
Q  472 atattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagt 571  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33168431 atattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctcgtgattgttggaataatctaatgattgaatcataatcaacctaagt 33168332  T
Q  572 ctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagttagata 671  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33168331 ctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaacgaagaaccgagaagtgaagttagata 33168232  T
Q  672 t 672  Q
    |    
T  33168231 t 33168231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 472 - 672
Target Start/End: Complemental strand, 17315424 - 17315224
Alignment:
Q  472 atattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagt 571  Q
    ||||||||||| |||||||||||||||||| |||||||||||| ||||||||| | |||||||| | ||||| |||||||||||| || |||||| || |    
T  17315424 atattttaatcccttgtctactatgatcatgagtgagtaaactattctagtcttgagattgttgaactaatcaaatgattgaatcctactcaacccaaat 17315325  T
Q  572 ctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagttagata 671  Q
     || ||||||||||||   ||| | |||  ||||||||||||||  || ||||  || ||||||||||||||| |||| || || | |||||||| ||||    
T  17315324 ttagaatctattttattttaattctttttataatctaatctcatcatttttaagcttaataacaaatatcaaacgaaggactgaaaggtgaagtttgata 17315225  T
Q  672 t 672  Q
    |    
T  17315224 t 17315224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 472 - 672
Target Start/End: Complemental strand, 17337335 - 17337135
Alignment:
Q  472 atattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagt 571  Q
    ||||||||||| |||||||||||||||||| |||||||||||| ||||||||| | |||||||| | ||||| |||||||||||| || |||||| || |    
T  17337335 atattttaatcccttgtctactatgatcatgagtgagtaaactattctagtcttgagattgttgaactaatcaaatgattgaatcctactcaacccaaat 17337236  T
Q  572 ctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagttagata 671  Q
     || ||||||||||||   ||| | |||  ||||||| ||||||  || ||||  || ||||||||||||||| |||| ||||| | |||||||| ||||    
T  17337235 ttagaatctattttattttaattcttttaataatctactctcatcatttttaagcttaataacaaatatcaaacgaaggaccgaaatgtgaagtttgata 17337136  T
Q  672 t 672  Q
    |    
T  17337135 t 17337135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 503 - 638
Target Start/End: Complemental strand, 13539845 - 13539710
Alignment:
Q  503 agtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcct 602  Q
    |||||||| | || || ||||| | |||| |||||||||||||||||||||||| || |||||  |||| || | | |||||||| | ||| | ||| ||    
T  13539845 agtgagtagatttatccagtcttgagattattggaataatctaatgattgaatcctattcaactcaagtttagactttattttattaaaattcgttttct 13539746  T
Q  603 aatctaatctcattgttgttaaattttataacaaat 638  Q
    |||||| |||||| |||||| |||||||||||||||    
T  13539745 aatctactctcatcgttgtttaattttataacaaat 13539710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 503 - 638
Target Start/End: Original strand, 13684629 - 13684764
Alignment:
Q  503 agtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcct 602  Q
    |||||||| | || || ||||| | |||| |||||||||||||||||||||||| || |||||  |||| || | | |||||||| | ||| | ||| ||    
T  13684629 agtgagtagatttatccagtcttgagattattggaataatctaatgattgaatcctattcaactcaagtttagactttattttattaaaattcgttttct 13684728  T
Q  603 aatctaatctcattgttgttaaattttataacaaat 638  Q
    |||||| |||||| |||||| |||||||||||||||    
T  13684729 aatctactctcatcgttgtttaattttataacaaat 13684764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 476 - 628
Target Start/End: Original strand, 27933191 - 27933343
Alignment:
Q  476 tttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaa 575  Q
    ||||||| ||||||||| ||||| || ||||| || ||||||||| | |   |||||||| ||||||||| |||||||||| || |||| | |||| ||     
T  27933191 tttaatcccttgtctacaatgatgatgagtgaatatacttttctacttttaggattgttgaaataatctattgattgaatcctattcaaaccaagtttag 27933290  T
Q  576 aatctattttataagaatccatttcctaatctaatctcattgttgttaaattt 628  Q
    | ||||||||||| |||    ||| |||||||| |||||||||  ||||||||    
T  27933291 actctattttatatgaaattgttttctaatctattctcattgtctttaaattt 27933343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 549
Target Start/End: Complemental strand, 9798462 - 9798390
Alignment:
Q  476 tttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatga 549  Q
    |||||||| ||||||||||| |||||||| ||||| ||  ||||||||| | |||||| |||||| ||||||||    
T  9798462 tttaatcttttgtctactataatcattagagagtagac-cttctagtcttgggattgtcggaatagtctaatga 9798390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 6e-39; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 472 - 630
Target Start/End: Original strand, 12881076 - 12881234
Alignment:
Q  472 atattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagt 571  Q
    ||||||||||| ||||||||||||||||||  ||||||| ||||||||  ||| | |||||| |||||||| ||||||||||||| ||||||||| || |    
T  12881076 atattttaatcccttgtctactatgatcatgggtgagtagacttttcttatcttgggattgtaggaataatttaatgattgaatcttaatcaacccaaat 12881175  T
Q  572 ctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaatttta 630  Q
     || |||||||||||||||||||||||| ||||| |||||||||  |||||||||||||    
T  12881176 ttagaatctattttataagaatccattttctaatataatctcatcattgttaaatttta 12881234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 533 - 672
Target Start/End: Complemental strand, 31139436 - 31139299
Alignment:
Q  533 ttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttata 632  Q
    |||||||||| |||||||||||||||| | |||| |||| |||||| |  ||||||| ||  ||||| ||||| |||| ||||||||||||||| |||||    
T  31139436 ttggaataatttaatgattgaatcatatttaacccaagtataaaatgt--tttataaaaaatcattttctaatataatttcattgttgttaaatattata 31139339  T
Q  633 acaaatatcaaatgaagaaccgagaagtgaagttagatat 672  Q
    |||||||||||| |||||| ||||| ||||| || |||||    
T  31139338 acaaatatcaaacgaagaatcgagatgtgaactttgatat 31139299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 484 - 649
Target Start/End: Original strand, 11271432 - 11271596
Alignment:
Q  484 cttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctatt 583  Q
    |||||||||||||||||| |||||||| ||||| |||||||   | |||||||| |||| |||||||||| || || |||||  ||||||| ||||||||    
T  11271432 cttgtctactatgatcatgagtgagtagacttt-ctagtcttaggtttgttggactaatataatgattgactcctattcaactgaagtctagaatctatt 11271530  T
Q  584 ttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaag 649  Q
    ||||   ||| | ||| |||||||||||||||  || ||||  || ||||||||||||||| ||||    
T  11271531 ttatttaaattctttttctaatctaatctcatcatttttaagcttaataacaaatatcaaacgaag 11271596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 540 - 631
Target Start/End: Original strand, 4863905 - 4863996
Alignment:
Q  540 aatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttat 631  Q
    ||||||||||||||||  ||||||||| ||||||| | ||||||||||||||||||||||  ||||||||| |||| |||  ||||||||||    
T  4863905 aatctaatgattgaatgttaatcaacccaagtctagactctattttataagaatccattttataatctaatatcatcgttactaaattttat 4863996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 476 - 653
Target Start/End: Original strand, 6013964 - 6014143
Alignment:
Q  476 tttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaat-cat-aatcaacctaagtct 573  Q
    ||||||||||||||||||||||| || ||||||| |||| ||||| ||| | |||||| || |||||| ||| ||| ||| |||  || |||| ||||||    
T  6013964 tttaatctcttgtctactatgattatgagtgagtgaactcttctattcttgggattgtggggataatcaaataatttaatccatgtataaacccaagtct 6014063  T
Q  574 aaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaacc 653  Q
    | | |||||||| || |||    ||| |||||||| |||||||||| |||||||| ||| | ||||| ||||||||||||    
T  6014064 agactctattttctatgaaattgtttgctaatctattctcattgtttttaaatttaatatctaatattaaatgaagaacc 6014143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 197 - 292
Target Start/End: Original strand, 4850318 - 4850413
Alignment:
Q  197 aaatagttgttacaaactcttagaattctttagttattgactagtaactcatttttaatgtattctcttaggttttagactataaatatacctcac 292  Q
    ||||||||||||||| || ||||||||||||||||  || || ||||||| |||||||| |||| | | ||| | ||| |||||||||||||||||    
T  4850318 aaatagttgttacaaccttttagaattctttagtttatggcttgtaactcgtttttaatatattatatgaggctctaggctataaatatacctcac 4850413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 584 - 637
Target Start/End: Original strand, 8890630 - 8890683
Alignment:
Q  584 ttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaa 637  Q
    |||||| ||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  8890630 ttataaaaattcattttctaatctaatctcatcgttgttaaattttataacaaa 8890683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 602 - 657
Target Start/End: Original strand, 4847019 - 4847074
Alignment:
Q  602 taatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgaga 657  Q
    ||||||||| |||||||| |||||||||||| ||| ||||||| ||||||||||||    
T  4847019 taatctaatatcattgttattaaattttatagcaagtatcaaacgaagaaccgaga 4847074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 476 - 547
Target Start/End: Complemental strand, 13833089 - 13833019
Alignment:
Q  476 tttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaat 547  Q
    |||||||| ||||||||||||||||| |||||||| || ||| |||| | ||||||||||||||| ||||||    
T  13833089 tttaatcttttgtctactatgatcatgagtgagtagaccttt-tagttttgtgattgttggaatagtctaat 13833019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 291
Target Start/End: Original strand, 6017874 - 6017981
Alignment:
Q  188 tgcagttagaaatagttgttacaaactcttagaatt----ctttagttattgactagtaactcatttttaatgtattctcttaggttttagactataaat 283  Q
    |||||| |||||||  ||||||||||||||||||||    ||||||||||||||| |||||||||| | ||||  || ||  ||| ||||| ||||||||    
T  6017874 tgcagtcagaaatatctgttacaaactcttagaattaattctttagttattgacttgtaactcattatcaatgccttgtccgaggctttaggctataaat 6017973  T
Q  284 atacctca 291  Q
    | ||||||    
T  6017974 agacctca 6017981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 11271189 - 11271238
Alignment:
Q  197 aaatagttgttacaaactcttagaattctttagttattgactagtaactc 246  Q
    ||||| |||||| ||||||||||||||||||||||||||| | |||||||    
T  11271189 aaataattgttataaactcttagaattctttagttattgatttgtaactc 11271238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 601 - 649
Target Start/End: Original strand, 4284996 - 4285044
Alignment:
Q  601 ctaatctaatctcattgttgttaaattttataacaaatatcaaatgaag 649  Q
    ||||||||||||||||||| ||||||||||||  |||||| ||||||||    
T  4284996 ctaatctaatctcattgttattaaattttatataaaatattaaatgaag 4285044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 634 - 672
Target Start/End: Original strand, 8890730 - 8890768
Alignment:
Q  634 caaatatcaaatgaagaaccgagaagtgaagttagatat 672  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  8890730 caaatatcaaacgaagaaccgagaagtgaagtttgatat 8890768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 6013674 - 6013735
Alignment:
Q  188 tgcagttagaaatagttgttacaaactcttag----aattctttagttattgactagtaact 245  Q
    |||||| ||||||||  |||||||||||||||    ||||||||||||||||||| ||||||    
T  6013674 tgcagtcagaaatagcggttacaaactcttagaattaattctttagttattgacttgtaact 6013735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 601 - 653
Target Start/End: Original strand, 6018290 - 6018342
Alignment:
Q  601 ctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaacc 653  Q
    |||||||| |||||||||| |||||||| ||| | ||||| ||||||||||||    
T  6018290 ctaatctattctcattgtttttaaatttaatatctaatattaaatgaagaacc 6018342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 476 - 556
Target Start/End: Original strand, 6020305 - 6020385
Alignment:
Q  476 tttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatc 556  Q
    |||||||| || |||||||||||||| |||||||||| | ||||| ||| | |||||| || |||||| ||| ||| ||||    
T  6020305 tttaatctattctctactatgatcatgagtgagtaaattcttctattcttgggattgtagggataatcaaataatttaatc 6020385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 474 - 672
Target Start/End: Original strand, 15154464 - 15154662
Alignment:
Q  474 attttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtct 573  Q
    ||||||||| ||||||||||| |||||| |||||||| ||| || |||||| | |||||||||| |||||||||||||||||| || |||||||||||||    
T  15154464 attttaatcccttgtctactacgatcatgagtgagtatactcttttagtcttgggattgttggactaatctaatgattgaatcctattcaacctaagtct 15154563  T
Q  574 aaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagttagatat 672  Q
    | | || ||||||| | ||| ||||| ||||||||||||| |  ||||| ||| | ||||||||||||||||||   ||||| | |||||||| |||||    
T  15154564 agactcaattttattaaaattcattttctaatctaatctcgtcattgtttaatctaataacaaatatcaaatgagagaccgaaatgtgaagtttgatat 15154662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 485 - 663
Target Start/End: Complemental strand, 31371796 - 31371615
Alignment:
Q  485 ttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaac-ctaagtctaaaatctatt 583  Q
    ||||| |||||||||||  ||||||| ||| | ||||||| | || ||||| |||||||||||||||||| | |||||||| | ||||||||| ||||||    
T  31371796 ttgtcaactatgatcatgtgtgagtagactct-ctagtcttgagaatgttgaaataatctaatgattgaaccctaatcaacgccaagtctaaactctatt 31371698  T
Q  584 ttataag---aatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaa 663  Q
    || ||||   ||||  ||| |||||||||||||||  || |||||||||||||||||||| ||| |||||||| ||| |||||    
T  31371697 ttgtaagctgaatctcttttctaatctaatctcatcattattaaattttataacaaatatgaaacgaagaacctagatgtgaa 31371615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 485 - 649
Target Start/End: Complemental strand, 10520488 - 10520324
Alignment:
Q  485 ttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattt 584  Q
    ||||||||||||||||   ||||||| |||||| || |||   |||||||| ||||||||||||||  |||| ||||||||  |||| || | |||||||    
T  10520488 ttgtctactatgatcacacgtgagtagacttttatactctttggattgttgaaataatctaatgatgaaatcttaatcaactcaagtttagactctattt 10520389  T
Q  585 tataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaag 649  Q
    | || ||||  || |  |||||||||||||||||| || ||||||| | ||||||||||| ||||    
T  10520388 tgtatgaatttatgttgtaatctaatctcattgttattgaattttaaatcaaatatcaaacgaag 10520324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 480 - 643
Target Start/End: Complemental strand, 15048236 - 15048073
Alignment:
Q  480 atctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatc 579  Q
    ||||||||||||| || ||||| |||||||| ||||| ||||||| | ||||||||||||| |||||||| | |||| || |||| | ||||||| || |    
T  15048236 atctcttgtctacaatcatcatgagtgagtatacttt-ctagtcttgggattgttggaatagtctaatgactaaatcctattcaaaccaagtctagaacc 15048138  T
Q  580 -tattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaa 643  Q
     ||||||||   ||| | ||| |||||||||||||||  || |||| | ||||| ||||||||||    
T  15048137 ttattttatttaaattctttttctaatctaatctcataatttttaagtcttatatcaaatatcaa 15048073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 480 - 643
Target Start/End: Original strand, 15106188 - 15106351
Alignment:
Q  480 atctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatc 579  Q
    ||||||||||||| || ||||| |||||||| ||||| ||||||| | ||||||||||||| |||||||| | |||| || |||| | ||||||| || |    
T  15106188 atctcttgtctacaatcatcatgagtgagtatacttt-ctagtcttgggattgttggaatagtctaatgactaaatcctattcaaaccaagtctagaacc 15106286  T
Q  580 -tattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaa 643  Q
     ||||||||   ||| | ||| |||||||||||||||  || |||| | ||||| ||||||||||    
T  15106287 ttattttatttaaattctttttctaatctaatctcataatttttaagtcttatatcaaatatcaa 15106351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 644
Target Start/End: Complemental strand, 53000360 - 53000317
Alignment:
Q  601 ctaatctaatctcattgttgttaaattttataacaaatatcaaa 644  Q
    ||||||||||||||| ||| |||||||||||| |||||||||||    
T  53000360 ctaatctaatctcatcgttattaaattttatatcaaatatcaaa 53000317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 472 - 638
Target Start/End: Original strand, 28973941 - 28974107
Alignment:
Q  472 atattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagt 571  Q
    ||||||||||| ||| ||||||||||| ||  |||| |  ||||||||| ||| | |||||||||||||||||||||| | |||| ||||||||| ||||    
T  28973941 atattttaatcccttttctactatgattatgtgtgaatggacttttctaatctcgagattgttggaataatctaatgactcaatcctaatcaacccaagt 28974040  T
Q  572 ctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaat 638  Q
        | |||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||    
T  28974041 tctgactctattttataagaatccatttgctaatctaatctcatcgttattaaattttataacaaat 28974107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 472 - 642
Target Start/End: Complemental strand, 8172958 - 8172789
Alignment:
Q  472 atattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagt 571  Q
    ||||||||||||||||||| ||||||||||  || | |  |||||| ||||||   ||||||| |||||||||||||||| |||||||||||||  ||||    
T  8172958 atattttaatctcttgtctgctatgatcatgtgtaaattgacttttttagtctttggattgttagaataatctaatgattaaatcataatcaactcaagt 8172859  T
Q  572 ctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatca 642  Q
    ||||| ||||||||||| |||| ||||| ||||| |||||||| |||||||||| ||| ||||||||||||    
T  8172858 ctaaactctattttataggaattcattttctaatataatctcagtgttgttaaa-tttgtaacaaatatca 8172789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 474 - 672
Target Start/End: Complemental strand, 24185401 - 24185203
Alignment:
Q  474 attttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtct 573  Q
    |||||||||  ||||||||||||||||| |||||||| ||||||||||||| | ||||| |||||||||||||||||| |||  ||  ||||| ||||||    
T  24185401 attttaatccattgtctactatgatcataagtgagtagacttttctagtcttgagattgatggaataatctaatgatttaattctatccaacccaagtct 24185302  T
Q  574 aaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagttagatat 672  Q
    |  |  | ||| |||| |   ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||   ||| |||||||| |||||    
T  24185301 aggacatgtttgataaaagatcattttctaatctaatctcatcgttgttaaattttataacaaatatcaaacgaagaatttagatgtgaagtttgatat 24185203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 493 - 587
Target Start/End: Original strand, 16917812 - 16917904
Alignment:
Q  493 tatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttat 587  Q
    ||||||||| | |||||| |||||| |||||| | ||||||| || ||||||||||||||||||||| |||||| ||||||| ||||||||||||    
T  16917812 tatgatcatgaatgagtagactttt-tagtcttgggattgttagactaatctaatgattgaatcatattcaacc-aagtctagaatctattttat 16917904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 485 - 576
Target Start/End: Complemental strand, 31603575 - 31603483
Alignment:
Q  485 ttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatc-aacctaagtctaaa 576  Q
    |||||||||||||||||  ||||||| | ||||||||||| |  ||||||  |||||||||||||| ||||| ||||| |||| |||||||||    
T  31603575 ttgtctactatgatcatatgtgagtagatttttctagtcttggaattgttaaaataatctaatgatggaatcctaatcaaacccaagtctaaa 31603483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 485 - 584
Target Start/End: Complemental strand, 21511910 - 21511811
Alignment:
Q  485 ttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaa-atctatt 583  Q
    |||||||||||||| || |||||||| ||  || |||||| | ||||||||||||| |||||||| | |||| || |||| | ||||||||| |||||||    
T  21511910 ttgtctactatgataatgagtgagtagaccatt-tagtcttgggattgttggaatagtctaatgacttaatcctattcaaaccaagtctaaatatctatt 21511812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 8e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 496 - 672
Target Start/End: Original strand, 28553412 - 28553591
Alignment:
Q  496 gatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatcc 595  Q
    |||||| ||||| || | ||||||||||| |  |||||| ||||||||| |||||||||||||| |||||| ||||||| | |||||||||| | ||| |    
T  28553412 gatcatgagtgaatagatttttctagtcttgatattgttagaataatctgatgattgaatcatattcaacccaagtctagactctattttattaaaattc 28553511  T
Q  596 atttcctaatctaatctcattgttgttaaattt---tataacaaatatcaaatgaagaaccgagaagtgaagttagatat 672  Q
    |||| |||||||||||||||||||||| | |||   |||||||||||||||| |||| | ||| | |||||||| |||||    
T  28553512 attttctaatctaatctcattgttgtttagtttatatataacaaatatcaaacgaaggatcgaaaggtgaagtttgatat 28553591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 472 - 638
Target Start/End: Original strand, 15918040 - 15918206
Alignment:
Q  472 atattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagt 571  Q
    |||||||||| |||| |||||||||||| | | |||||| ||||| || || | | ||||||||||||||||||||||||||||| ||||||||  ||||    
T  15918040 atattttaatatcttatctactatgatcttgattgagtagactttccttgtattgggattgttggaataatctaatgattgaatcctaatcaactcaagt 15918139  T
Q  572 ctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaat 638  Q
    ||| |  |||||||| | ||||  || |  |||| ||||||||| ||| |||||||||||| |||||    
T  15918140 ctagaccctattttacatgaatttatgttttaatttaatctcatcgttattaaattttatatcaaat 15918206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 475 - 672
Target Start/End: Original strand, 37627453 - 37627645
Alignment:
Q  475 ttttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatc-aacctaagtct 573  Q
    |||||||||||||||||||||||||||  ||||||| || ||||||||||   ||||||||||||||||||| ||||||||  ||||| |||| ||||||    
T  37627453 ttttaatctcttgtctactatgatcatgtgtgagtagacatttctagtcttaagattgttggaataatctaaggattgaattctaatcaaaccaaagtct 37627552  T
Q  574 aaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagttagatat 672  Q
    | |     |||||| |   | | ||  ||||||||||||||| ||| |||||||||||| ||||||||||| |||| || |||| ||||| || |||||    
T  37627553 aga----tttttatgaacttgcgtt--ctaatctaatctcatcgttattaaattttatatcaaatatcaaacgaagtactgagaggtgaaatttgatat 37627645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 476 - 588
Target Start/End: Original strand, 12788717 - 12788829
Alignment:
Q  476 tttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaa 575  Q
    ||||||| ||||||||| || ||||| |||||||| | ||||||||||| | |||||||| ||||| |||||||| ||| | || |||||| |||| ||     
T  12788717 tttaatcccttgtctacaattatcatgagtgagtagaattttctagtcttgggattgttgaaataagctaatgatggaaccctattcaacccaagtatac 12788816  T
Q  576 aatctattttata 588  Q
    | |||||||||||    
T  12788817 actctattttata 12788829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 206 - 292
Target Start/End: Original strand, 15917775 - 15917861
Alignment:
Q  206 ttacaaactcttagaattctttagtt-attgactagtaactcatttttaatgtattctcttaggttttagactataaatatacctcac 292  Q
    |||||||||||||||||||||| ||| |||| || ||||||| ||||||||||||| ||| ||| | ||| ||||||||| |||||||    
T  15917775 ttacaaactcttagaattctttggttgattgcct-gtaactcgtttttaatgtattgtctgagggtctaggctataaatagacctcac 15917861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 12788407 - 12788457
Alignment:
Q  181 tgtcctatgcagttagaaatagttgttacaaactcttagaattctttagtt 231  Q
    ||||||||||||| | |||||| |||||||||||||||||||||| |||||    
T  12788407 tgtcctatgcagtcataaatagctgttacaaactcttagaattctctagtt 12788457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 473 - 576
Target Start/End: Original strand, 8236350 - 8236453
Alignment:
Q  473 tattttaatctcttgtctactatgatcattagtgagtaaacttttctagtc-tagtgattgttggaataatctaatgattgaatcataatcaacctaagt 571  Q
    |||||||||||  |||||||||||||||| |||||||| || ||| ||||| | | ||||||||||||| |||||||| | |||| || |||| | ||||    
T  8236350 tattttaatcttatgtctactatgatcatgagtgagtagaccttt-tagtctttgggattgttggaatagtctaatgacttaatcttattcaaaccaagt 8236448  T
Q  572 ctaaa 576  Q
    |||||    
T  8236449 ctaaa 8236453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 14601490 - 14601438
Alignment:
Q  204 tgttacaaactcttagaattctttagttattgactagtaactcatttttaatg 256  Q
    |||||||||||||||||||||||||||||||  || ||||||| |||| ||||    
T  14601490 tgttacaaactcttagaattctttagttattagcttgtaactcgttttcaatg 14601438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 505 - 672
Target Start/End: Original strand, 10234701 - 10234869
Alignment:
Q  505 tgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaa-cctaagtctaaaatctattttataagaatccatttccta 603  Q
    |||||| || ||| |||||| |||||||||| |||||||||||||||||||| |||| || || ||||||||| ||||||||||| ||||  |  | |||    
T  10234701 tgagtagacctttttagtcttgtgattgttgaaataatctaatgattgaatcctaatgaaacccaagtctaaactctattttatatgaatttacgttcta 10234800  T
Q  604 atctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagttagatat 672  Q
    ||||||||  ||||||||||||||| ||| ||||||||||| |||| ||||||  |||||||| |||||    
T  10234801 atctaatcgtattgttgttaaatttaatatcaaatatcaaacgaagtaccgagcggtgaagtttgatat 10234869  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 486 - 672
Target Start/End: Original strand, 9046272 - 9046459
Alignment:
Q  486 tgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctatttt 585  Q
    ||||||| |||||||| |||||||| |||| ||||| || |  ||||||||||| || |||||||  |||| || | || | || | |||| ||||||||    
T  9046272 tgtctacgatgatcatgagtgagtagacttgtctagccttggaattgttggaatgatataatgatccaatcctatttaaaccaaatttaaattctatttt 9046371  T
Q  586 ataagaatccatttcctaatctaatctcattg-ttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagttagatat 672  Q
    || | |||   ||| ||||||||||||||| | || ||||   ||||| ||||||||||| |||| ||||| |||||||||| |||||    
T  9046372 attacaatttgttttctaatctaatctcatagttttttaagccttatatcaaatatcaaacgaaggaccgaaaagtgaagtttgatat 9046459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 601 - 666
Target Start/End: Original strand, 23395001 - 23395066
Alignment:
Q  601 ctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagtt 666  Q
    |||||||| |||||| ||| |||||||| ||| | ||||| |||||||||||||| ||||||||||    
T  23395001 ctaatctattctcatcgtttttaaatttgatatctaatattaaatgaagaaccgaaaagtgaagtt 23395066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 537
Target Start/End: Original strand, 14545537 - 14545590
Alignment:
Q  484 cttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttgga 537  Q
    ||||||||| |||| |||||||||||| |||| ||| |||| ||||||||||||    
T  14545537 cttgtctacgatgaacattagtgagtagacttctcttgtcttgtgattgttgga 14545590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 473 - 549
Target Start/End: Complemental strand, 6847821 - 6847746
Alignment:
Q  473 tattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatga 549  Q
    ||||| ||||| ||||||||||||||||| |||||||| ||  | ||||| | | ||||||||||||| ||||||||    
T  6847821 tatttaaatcttttgtctactatgatcataagtgagtagac-ctcctagttttgggattgttggaatagtctaatga 6847746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 474 - 612
Target Start/End: Complemental strand, 12685817 - 12685682
Alignment:
Q  474 attttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtct 573  Q
    |||||||||  |||||||| |||||| | | |||||| |||||   ||||| | |||||||||| ||||||||||||||||||||| |||||| ||||||    
T  12685817 attttaatcctttgtctacaatgatcgtgactgagtacacttt---agtcttgggattgttggactaatctaatgattgaatcatattcaacccaagtct 12685721  T
Q  574 aaaatctattttataagaatccatttcctaatctaatct 612  Q
    ||||||||||||||   ||| | ||| ||||||||||||    
T  12685720 aaaatctattttatttaaattctttttctaatctaatct 12685682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 472 - 672
Target Start/End: Original strand, 26266456 - 26266657
Alignment:
Q  472 atattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagt 571  Q
    ||||||||||||||| |||| |||||  || ||| |||| ||||||||| | | | |||||||||| |||||||||||||||||| || | |||| ||||    
T  26266456 atattttaatctcttctctaatatgagaatgagtaagtagacttttctaatgttgagattgttggactaatctaatgattgaatcctatttaacccaagt 26266555  T
Q  572 ctaaaatctattttataagaatccatttcctaatctaatctcat-tgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagttagat 670  Q
     |  ||| || |||||   ||| | ||| ||||| |||||||||   |||||||  || |||| ||||||||||||||| ||||| |||||||||| |||    
T  26266556 atggaatttactttatttaaattctttttctaatataatctcatcatttgttaaccttaataaaaaatatcaaatgaaggaccgaaaagtgaagtttgat 26266655  T
Q  671 at 672  Q
    ||    
T  26266656 at 26266657  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 551
Target Start/End: Complemental strand, 356863 - 356806
Alignment:
Q  494 atgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgatt 551  Q
    ||||||||| |||| |||||| || |||||| | |||||| |||||||||||||||||    
T  356863 atgatcattggtgaataaactcttttagtcttgagattgtgggaataatctaatgatt 356806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 357163 - 357130
Alignment:
Q  195 agaaatagttgttacaaactcttagaattcttta 228  Q
    ||||||||||||| ||||||||||||||||||||    
T  357163 agaaatagttgttgcaaactcttagaattcttta 357130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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