View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7680_low_7 (Length: 634)
Name: NF7680_low_7
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7680_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 14 - 617
Target Start/End: Complemental strand, 45974691 - 45974089
Alignment:
| Q |
14 |
tttggtgttggaggagtagacgaggaaagtgactttgtggttggagtgtcgttttcgattggagatttgatggagttgacgattttgtccttatcttgat |
113 |
Q |
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| T |
45974691 |
tttggtgttggaggagtagacgaggaaagtgactttgtggttggagtgtcgttttcgattggagatttgatggagttgacgattttgtccttatcttgat |
45974592 |
T |
|
| Q |
114 |
ctaatagctttttggatgattcatccaatcctcgctccggaaattgacgcgggaaaaagtaagttgctctatgtggcattttcactcacgagcctcttgc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974591 |
ctaatagctttttggatgattcatccaatcctcgctccggaaattgacgcgggaaaaagtaagttgctctatgtggcattttcactcacgagcctcttgc |
45974492 |
T |
|
| Q |
214 |
tgccacgtagcaaaccaagaaacaaacggaaacttggccgttaccgacaccgtcctcttcgctgnnnnnnnnnnnnnnnnnnnctcaacgcatgcaaatc |
313 |
Q |
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| T |
45974491 |
-gccacgtagcaaaccaagaaacaaacggaaacttggccgttaccgacaccgtcctcttcgttgctgttcttcttcttctttcctcaacgcatgcaaatc |
45974393 |
T |
|
| Q |
314 |
tcttattgcaacaatcaaataacagcacttgaactaattattatgcataatatatagttggaagctgaattgtattttactcttaagaaacttagaagac |
413 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974392 |
tcttattgcaacaatcaaataacagcacttcaactaattattatgcataatatatagttggaagctgaattgtattttactcttaagaaacttagaagac |
45974293 |
T |
|
| Q |
414 |
agattgataagtataatcgcgtagttgcgatgtttaaagcgggatatggttttccgataaagaggaaatgtgatatgctatagtgctaataataatggag |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974292 |
agattgataagtataatcgcgtagttgcgatgtttaaagcgggatatggttttccgataaagaggaaatgtgatatgctatagtgctaataataatggag |
45974193 |
T |
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| Q |
514 |
gtactggtaactgaaaaacacagagaaaacgtgaatgtgatggtgatgtaatgtggttggttgtgaacttgtgacattgtgcactgttgatttaacttgt |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974192 |
gtactggtaactgaaaaacacagagaaaacgtgaatgtgatggtgatgtaatgtggttggttgtgaacttgtgacattgtgcactgttgatttaacttgt |
45974093 |
T |
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| Q |
614 |
aatg |
617 |
Q |
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|||| |
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| T |
45974092 |
aatg |
45974089 |
T |
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