View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7681_low_2 (Length: 491)
Name: NF7681_low_2
Description: NF7681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7681_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 16 - 474
Target Start/End: Complemental strand, 50556550 - 50556083
Alignment:
| Q |
16 |
attgaaaggatggttaaggttgttgatttgaactttgatggaaaagttgattttggtgagtttgaattgatgatgggataatactttaccagtttgttca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50556550 |
attgaaaggatggttaaggttgttgatttgaactttgatggaaaagttgattttggtgagtttgaattgatgatgggataatactttaccagtttgttca |
50556451 |
T |
|
| Q |
116 |
ttccttgattttagaatgtaataataattattgatccctcaactgtaaactattaaattaagttaaattaaattgttttgatttatcacagtataattct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50556450 |
ttccttgattttagaatgtaataataattattgatccctcaactgtaaactattaaattaagttaaattaaattgttttgatttatcacagtataattct |
50556351 |
T |
|
| Q |
216 |
atgatgaaaatgaattatgaag--------nnnnnnnnnnngcatcatctgcttacatcgatcttgattgcaatattgcagacaaatcccatttagtata |
307 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50556350 |
atgatgaaaatgaattatgaagtttttgttttttgttttttgcatcatctgcttacatcgatcttgattgcaatattgcagacaaatcccatttagtata |
50556251 |
T |
|
| Q |
308 |
tatgtcatacatgattttttggttttaacaatctggttccaaggaaaaagttgtagtaacctagagtggtcgggaggtaagtaaaatatgatcgataatt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50556250 |
tatgtcatacatgattttttggttttaacaatctggttccaaggaaaaagttgtagtaacctagagtggtcgggaggtaagtaaaatatgatcgataatt |
50556151 |
T |
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| Q |
408 |
attttagttaagaatcaaattaagcacccgattgatttgatcttatg-aacttgttaatcacttaagt |
474 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
50556150 |
attttagttaagaatcaaattgagcacccgatcgatttgatcttatgaaacttgttaatcacttaagt |
50556083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 50818064 - 50817957
Alignment:
| Q |
16 |
attgaaaggatggttaaggttgttgatttgaactttgatggaaaagttgattttggtgagtttgaattgatgatgggataatactttaccagtttgttca |
115 |
Q |
| |
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||||||||||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
50818064 |
attgaaaggatggttaaggttgttgttttgagcttatgtggaaaagttgattccggtgagtttgaattgatgatgggatagtactttaccagtctgttca |
50817965 |
T |
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| Q |
116 |
ttccttga |
123 |
Q |
| |
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|||||||| |
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| T |
50817964 |
ttccttga |
50817957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 50857800 - 50857907
Alignment:
| Q |
16 |
attgaaaggatggttaaggttgttgatttgaactttgatggaaaagttgattttggtgagtttgaattgatgatgggataatactttaccagtttgttca |
115 |
Q |
| |
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||||||||||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
50857800 |
attgaaaggatggttaaggttgttgttttgagcttatgtggaaaagttgattccggtgagtttgaattgatgatgggatagtactttaccagtctgttca |
50857899 |
T |
|
| Q |
116 |
ttccttga |
123 |
Q |
| |
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|||||||| |
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|
| T |
50857900 |
ttccttga |
50857907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 50817921 - 50817877
Alignment:
| Q |
276 |
tgcaatattgcagacaaatcccatttagtatatatgtcatacatg |
320 |
Q |
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||||||||||||||| |||||||||||||||| ||||||| |||| |
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| T |
50817921 |
tgcaatattgcagacgaatcccatttagtatacatgtcatgcatg |
50817877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 50857943 - 50857987
Alignment:
| Q |
276 |
tgcaatattgcagacaaatcccatttagtatatatgtcatacatg |
320 |
Q |
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||||||||||||||| |||||||||||||||| ||||||| |||| |
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| T |
50857943 |
tgcaatattgcagacgaatcccatttagtatacatgtcatgcatg |
50857987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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