View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7681_low_3 (Length: 380)
Name: NF7681_low_3
Description: NF7681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7681_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 9 - 361
Target Start/End: Complemental strand, 41677259 - 41676908
Alignment:
| Q |
9 |
aatgatatgaatcaattcaaaatcaggttttggtaagatgatgtagaaggtaaataataagtattgctagctgtccatatttcctcttggaaaaattatt |
108 |
Q |
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| T |
41677259 |
aatgatatgaatcaattcaaaatcaggttt-ggtaagatgatgtagaaggtaaataataagtattgctagctgtccatatttcctcttggaaaaattatt |
41677161 |
T |
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| Q |
109 |
tgttaactatggattagagattgatcgttaattatctaaatttttgtcctacgcataatttaatttataaaataggatctacacatacacatctcgtcaa |
208 |
Q |
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| T |
41677160 |
tgttaactatggattagagattgatcgttaattatctaaatttttgtcctacgcataatttaatttataaaaaaggatctacacatacacatctcgtcaa |
41677061 |
T |
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| Q |
209 |
aaaggaatacacttgtcatgtttaaacgaaactttaataatagtgttgagctaagggtttgactaaaggtggccgacttattgtatgaaatatcttcttg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41677060 |
aaaggaatacacttgtcatgtttaaacgaaactttaataatagtgttgagctaagggtttgactaaaggtggccgacttattgtatgaaatatcttcttg |
41676961 |
T |
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| Q |
309 |
acaaagtgattatcaaacagtgtgtttcgttgatgtgtgactatatgacgatg |
361 |
Q |
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| T |
41676960 |
acaaagtgattatcaaacagtgtgtttcgttgatgtgtgagtatatgacgatg |
41676908 |
T |
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