View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7681_low_5 (Length: 290)

Name: NF7681_low_5
Description: NF7681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7681_low_5
NF7681_low_5
[»] chr1 (7 HSPs)
chr1 (17-284)||(38116311-38116578)
chr1 (87-198)||(38160187-38160298)
chr1 (19-61)||(3234161-3234203)
chr1 (17-62)||(5894289-5894334)
chr1 (17-62)||(41195330-41195375)
chr1 (21-62)||(47498973-47499014)
chr1 (26-62)||(51688594-51688630)
[»] chr4 (3 HSPs)
chr4 (17-284)||(49004096-49004362)
chr4 (23-61)||(27025-27063)
chr4 (25-59)||(3155505-3155539)
[»] chr5 (7 HSPs)
chr5 (17-62)||(7984877-7984922)
chr5 (17-62)||(12425470-12425515)
chr5 (17-62)||(32372513-32372558)
chr5 (17-62)||(32703574-32703619)
chr5 (17-62)||(39105363-39105408)
chr5 (18-62)||(3735628-3735672)
chr5 (18-62)||(7319148-7319192)
[»] chr7 (3 HSPs)
chr7 (17-62)||(23989620-23989665)
chr7 (17-62)||(38500054-38500099)
chr7 (19-63)||(21619305-21619349)
[»] chr3 (6 HSPs)
chr3 (17-62)||(34235202-34235247)
chr3 (17-62)||(1508717-1508762)
chr3 (17-62)||(46778363-46778408)
chr3 (18-62)||(139810-139854)
chr3 (19-59)||(28240228-28240268)
chr3 (18-62)||(34034060-34034104)
[»] chr2 (4 HSPs)
chr2 (17-61)||(41407191-41407235)
chr2 (17-63)||(33319949-33319995)
chr2 (21-62)||(43570315-43570356)
chr2 (17-62)||(44589934-44589979)
[»] chr8 (5 HSPs)
chr8 (20-62)||(36963484-36963526)
chr8 (17-62)||(1058210-1058255)
chr8 (17-62)||(14956431-14956476)
chr8 (17-62)||(38750247-38750292)
chr8 (17-58)||(40859844-40859885)
[»] chr6 (5 HSPs)
chr6 (17-62)||(6538406-6538451)
chr6 (17-62)||(18076085-18076130)
chr6 (17-62)||(34430605-34430650)
chr6 (19-63)||(264269-264313)
chr6 (18-62)||(35069451-35069495)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 38116311 - 38116578
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaattttagtggacataattaatgtcaactagaaattataattgaaacttgttttata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38116311 acataagcgcttatcatgataagcgcatgtactataagctgcaaattttagtggacaaaattaatgtcaactagaaattataattgaaacttgttttata 38116410  T
Q  117 cctgtaggcttaaccaatgtcagctcaaaaaggaagcatggacagtggagcttcaaggaaacgtatgaaacctggggtaattgttgttttcgcctttcaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38116411 cctgtaggcttaaccaatgtcagctcaaaaaggaagcatggacagtggagcttcaaggaaacgtatgaaacctggggtaattgttgttttcgcctttcaa 38116510  T
Q  217 cctttttcttgtcatgaatttacagcatttcaagcattctttgatgtttaatttgcttttcttctcac 284  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38116511 tctttttcttgtcatgaatttacagcatttcaagcattctttgatgtttaatttgcttttcttttcac 38116578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 38160187 - 38160298
Alignment:
Q  87 ctagaaattataattgaaacttgttttatacctgtaggcttaaccaatgtcagctcaaaaaggaagcatggacagtggagcttcaaggaaacgtatgaaa 186  Q
    ||||||| ||||||| ||| | ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||  | |||||||||||||||||    
T  38160187 ctagaaactataattcaaaatagttttgtacctgtaggcttaaccaatgtctgctcaaaagggaagcatggacagtggaaatacaaggaaacgtatgaaa 38160286  T
Q  187 cctggggtaatt 198  Q
    |||| |||||||    
T  38160287 cctgaggtaatt 38160298  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 3234161 - 3234203
Alignment:
Q  19 ataagcgcttatcatgataagcgcatgtactataagctgcaaa 61  Q
    |||||||||||||||||||||||| ||| ||||||| ||||||    
T  3234161 ataagcgcttatcatgataagcgcttgtgctataagttgcaaa 3234203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 5894289 - 5894334
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    |||||||||||||||||||||||| | ||| ||||||||| |||||    
T  5894289 acataagcgcttatcatgataagcacttgtgctataagcttcaaat 5894334  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 41195330 - 41195375
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    ||||||||| |||||| ||||||||| ||| |||||||||||||||    
T  41195330 acataagcgattatcaggataagcgcttgtgctataagctgcaaat 41195375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 47498973 - 47499014
Alignment:
Q  21 aagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    |||||||||||||||||||| | ||| |||||||||||||||    
T  47498973 aagcgcttatcatgataagcacttgtgctataagctgcaaat 47499014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 51688630 - 51688594
Alignment:
Q  26 cttatcatgataagcgcatgtactataagctgcaaat 62  Q
    ||||||||||||||| | |||||||||||||||||||    
T  51688630 cttatcatgataagcacttgtactataagctgcaaat 51688594  T

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Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 49004096 - 49004362
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaattttagtggacataattaatgtcaactagaaattataattgaaacttgttttata 116  Q
    ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| | |||| |||| | ||||||||||||||| ||||||||||||||    
T  49004096 acataagcgcttatcattataagcgcatgtgctataatctgcaaattttagtggaga-aatttatgttacctagaaattataattcaaacttgttttata 49004194  T
Q  117 cctgtaggcttaaccaatgtcagctcaaaaaggaagcatggacagtggagcttcaaggaaacgtatgaaacctggggtaattgttgttttcgcctttcaa 216  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49004195 cctataggcttaaccaatgtcagctcaaaaaggaagcatggacagtggagcttcaaggaaacgtatgaaacctggggtaattgttgttttcgcctttcaa 49004294  T
Q  217 cctttttcttgtcatgaatttacagcatttcaagcattctttgatgtttaatttgcttttcttctcac 284  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||    
T  49004295 cctttttcttgtcatgaatttacagcagttctagcattctttgatgtttcatttgcttttcttttcac 49004362  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 27025 - 27063
Alignment:
Q  23 gcgcttatcatgataagcgcatgtactataagctgcaaa 61  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  27025 gcgcttatcatgataagcgcttgtgctataagctgcaaa 27063  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 3155539 - 3155505
Alignment:
Q  25 gcttatcatgataagcgcatgtactataagctgca 59  Q
    |||||||||||||||||| ||||||||||||||||    
T  3155539 gcttatcatgataagcgcttgtactataagctgca 3155505  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 7984922 - 7984877
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7984922 acataagcgcttatcatgataagcgcatgtactataagctgcaaat 7984877  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 12425515 - 12425470
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    ||||||||| |||||||||||| | | |||||||||||||||||||    
T  12425515 acataagcgtttatcatgataaacacttgtactataagctgcaaat 12425470  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 32372558 - 32372513
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    ||||||| ||||||||||||||| || ||| |||||||||||||||    
T  32372558 acataagggcttatcatgataagtgcttgtgctataagctgcaaat 32372513  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 32703574 - 32703619
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    ||||||||||||||||||||||  || ||| |||||||||||||||    
T  32703574 acataagcgcttatcatgataaatgcttgtgctataagctgcaaat 32703619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 39105408 - 39105363
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    |||||||||||||||||||||||| | | | |||||||||||||||    
T  39105408 acataagcgcttatcatgataagcacttatgctataagctgcaaat 39105363  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 3735628 - 3735672
Alignment:
Q  18 cataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    ||||||||||||||||||||| | | ||| |||||||||||||||    
T  3735628 cataagcgcttatcatgataatctcttgtgctataagctgcaaat 3735672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 7319148 - 7319192
Alignment:
Q  18 cataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    |||||| |||||||||||||||||| ||| |||||||||| ||||    
T  7319148 cataagtgcttatcatgataagcgcttgtgctataagctgtaaat 7319192  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 23989620 - 23989665
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    |||||||  ||||||||||||||||| |||||||||||||||||||    
T  23989620 acataagaacttatcatgataagcgcgtgtactataagctgcaaat 23989665  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 38500054 - 38500099
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||    
T  38500054 acataagcgcttatcatgataagcgcttgtgctataaactgcaaat 38500099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 21619349 - 21619305
Alignment:
Q  19 ataagcgcttatcatgataagcgcatgtactataagctgcaaatt 63  Q
    ||||| ||||||||||||||| || ||| ||||||||||||||||    
T  21619349 ataagtgcttatcatgataagtgcttgtgctataagctgcaaatt 21619305  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 34235202 - 34235247
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    ||||||| |||||||||||||||| ||||||||||||||| |||||    
T  34235202 acataagtgcttatcatgataagcacatgtactataagctacaaat 34235247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 1508717 - 1508762
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    |||||||||||||||||||||||| | ||| ||||||| |||||||    
T  1508717 acataagcgcttatcatgataagcacttgtgctataagttgcaaat 1508762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 46778363 - 46778408
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    ||||||||||||||||||||||| |  ||||||||||| |||||||    
T  46778363 acataagcgcttatcatgataagtgtttgtactataaggtgcaaat 46778408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 139810 - 139854
Alignment:
Q  18 cataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    |||||||||||||||||||||| || || |||||||||| |||||    
T  139810 cataagcgcttatcatgataagtgcctgcactataagctccaaat 139854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 28240268 - 28240228
Alignment:
Q  19 ataagcgcttatcatgataagcgcatgtactataagctgca 59  Q
    |||||| ||||||||||||||||| ||| ||||||||||||    
T  28240268 ataagcacttatcatgataagcgcttgtgctataagctgca 28240228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 34034104 - 34034060
Alignment:
Q  18 cataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    |||||| |||||||||||||||||| ||| |||||||||| ||||    
T  34034104 cataagtgcttatcatgataagcgcctgttctataagctgaaaat 34034060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 41407235 - 41407191
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaa 61  Q
    ||||||| |||||||||||||||||| ||| ||||||||||||||    
T  41407235 acataagtgcttatcatgataagcgcttgtgctataagctgcaaa 41407191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 33319949 - 33319995
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaatt 63  Q
    ||||||||| |||||| ||||||||| ||| ||||||||||||||||    
T  33319949 acataagcgattatcaggataagcgcttgtgctataagctgcaaatt 33319995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 43570356 - 43570315
Alignment:
Q  21 aagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    ||||||||||||||||||| || ||| |||||||||||||||    
T  43570356 aagcgcttatcatgataagtgcttgtgctataagctgcaaat 43570315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 44589979 - 44589934
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    |||||||| ||||||||||||||||| | ||||||||||| |||||    
T  44589979 acataagcacttatcatgataagcgcttatactataagctccaaat 44589934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 36963484 - 36963526
Alignment:
Q  20 taagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    |||||| |||||||||||||||| ||| |||||||||||||||    
T  36963484 taagcgtttatcatgataagcgcttgtgctataagctgcaaat 36963526  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 1058210 - 1058255
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    |||||||||||||||||  ||||||| ||| |||||||||||||||    
T  1058210 acataagcgcttatcatagtaagcgcttgtgctataagctgcaaat 1058255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 14956431 - 14956476
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    ||||||| |||||||||||||||||  ||| |||||||||||||||    
T  14956431 acataagtgcttatcatgataagcgattgtgctataagctgcaaat 14956476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 38750292 - 38750247
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    ||||||||||||||||||||||| |||||||||  ||||| |||||    
T  38750292 acataagcgcttatcatgataagtgcatgtacttcaagcttcaaat 38750247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 40859844 - 40859885
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgc 58  Q
    |||||||||||||||||||||||| | ||| |||||||||||    
T  40859844 acataagcgcttatcatgataagcacttgtgctataagctgc 40859885  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 6538451 - 6538406
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    ||||||||||||||||| ||||| || ||| |||||||||||||||    
T  6538451 acataagcgcttatcattataagtgcttgtgctataagctgcaaat 6538406  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 18076130 - 18076085
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    ||||||| |||||| ||||||||||| ||| |||||||||||||||    
T  18076130 acataagtgcttattatgataagcgcttgtgctataagctgcaaat 18076085  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 34430650 - 34430605
Alignment:
Q  17 acataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    |||||||||| ||||||||||||| | ||| |||||||||||||||    
T  34430650 acataagcgcctatcatgataagcacttgtgctataagctgcaaat 34430605  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 264313 - 264269
Alignment:
Q  19 ataagcgcttatcatgataagcgcatgtactataagctgcaaatt 63  Q
    |||||| ||||||||||||||| | ||| ||||||||||||||||    
T  264313 ataagcacttatcatgataagcacttgtgctataagctgcaaatt 264269  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 35069495 - 35069451
Alignment:
Q  18 cataagcgcttatcatgataagcgcatgtactataagctgcaaat 62  Q
    ||||||| ||||||||||||| ||| ||| |||||||||||||||    
T  35069495 cataagcacttatcatgataaacgcttgtgctataagctgcaaat 35069451  T

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