View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7682_high_12 (Length: 389)
Name: NF7682_high_12
Description: NF7682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7682_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 13 - 371
Target Start/End: Complemental strand, 39988169 - 39987811
Alignment:
| Q |
13 |
aatatagctgtgcccacaaagaagcctctaataccattcatgccaactcaaaatactgaacaagtcatagttggcagccagttaatgaaaccaaatttcc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39988169 |
aatatagctgtgcccacaaagaagcctctaataccattcctgccaactcaaaatactgaacaagtcatagttggcagccagttaatgaaaccaaatttcc |
39988070 |
T |
|
| Q |
113 |
agaggcagaaaagaaaacaaagatgaaaagaatgcaactcaacgtttcatgaaaacaattgttcaaaggtctgtaagttcagcgcatttcttttcccttt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39988069 |
agaggcagaaaagaaaacaaagatgaaaagaatgcaactcaacgtttcatgaaaacaattgttcaaaggtctgtaagttcagcgcatttcttttcccttt |
39987970 |
T |
|
| Q |
213 |
tttattacgtcgttagttatttttctgctaaagagccaactaaacatgaaacttgttttctaatgtatcagaagcgttaaaatgcatacannnnnnnagc |
312 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39987969 |
tttattacgtcgtcagttatttttctgctaaagagctaactaaacatgaaacttgttttctaatgtatcagaagcgttaaaatgcatacatttttttagc |
39987870 |
T |
|
| Q |
313 |
ggatttgaaatttcacttataaattctgttaaaattttatgtctacttctctccacagt |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39987869 |
ggatttgaaatttcacttataaattctgttaaaattttatgtctacttctctccacagt |
39987811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University