View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7682_high_13 (Length: 328)
Name: NF7682_high_13
Description: NF7682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7682_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 8475161 - 8474868
Alignment:
| Q |
17 |
attatgcactaagacacctacactggagacgatgttaacacacacataggcatctgataataatttgagaaagtaaatgtgattgaatgtaattacacat |
116 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8475161 |
attatgcactaaaacacctacactggacacgatgttaacacacgcataggcatctggtaataatttgagaaagtaaatgtgattgaacgtaattacacat |
8475062 |
T |
|
| Q |
117 |
gtgcgtattgtgtcggtatcactaacatatgaatgtcgctacaacataggttgacaaccgtgtaaaatacactttcttcaacaagcaaaaaaccatgtaa |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8475061 |
gtgcgtattgtgtcggtatcactaacatatgaatgtcgctactacataggttgacaaccgtgtaaaatacactttcttcaacaagcaaaaaacagtgtaa |
8474962 |
T |
|
| Q |
217 |
aatacactatttataactattgatttgacttgagaaaagaga-aaaactaataaaaaatgaaattgtatctacacaatatataataaatacgttg |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
8474961 |
aatacactatttataactattgatttgacttgagaaaagagaaaaaactaataaaaaatg-aattgtatctacgcaatatataataaatacgttg |
8474868 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 215 - 299
Target Start/End: Original strand, 4666834 - 4666919
Alignment:
| Q |
215 |
aaaatacactatttataactattgatttgacttgagaaaagag-aaaaactaataaaaaatgaaattgtatctacacaatatataa |
299 |
Q |
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||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| |||| |||||||||||||||||| |
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| T |
4666834 |
aaaatacaccatttataactattgatttgacttgaggaaagagaaaaaactaataaaaaacaaaatcatatctacacaatatataa |
4666919 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 42279283 - 42279355
Alignment:
| Q |
215 |
aaaatacactatttataactattgatttgacttgagaaaagagaaaaactaataaaaaatgaaattgtatcta |
287 |
Q |
| |
|
||||||||| | ||||||||||| ||||||||| |||| | |||||||||||||||||| |||||||||||| |
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|
| T |
42279283 |
aaaatacaccacttataactattaatttgacttcagaagaaagaaaaactaataaaaaaccaaattgtatcta |
42279355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 23106679 - 23106723
Alignment:
| Q |
218 |
atacactatttataactattgatttgacttgagaaaagagaaaaa |
262 |
Q |
| |
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|||||| |||||| |||||||||||||||| || ||||||||||| |
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|
| T |
23106679 |
atacaccatttattactattgatttgacttaaggaaagagaaaaa |
23106723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 28640571 - 28640618
Alignment:
| Q |
225 |
atttataactattgatttgacttgagaaaagagaaaaactaataaaaa |
272 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||| |
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|
| T |
28640571 |
atttataactattgatttgactttagaagagagaaaaactaataaaaa |
28640618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 1642076 - 1642133
Alignment:
| Q |
225 |
atttataactattgatttgacttgagaaaagagaa-aaactaataaaaaatgaaattg |
281 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| || |||||||||||||||||||||| |
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|
| T |
1642076 |
atttataaccgttgatttgactcgagaaaagaaaagaaactaataaaaaatgaaattg |
1642133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 18768896 - 18768957
Alignment:
| Q |
226 |
tttataactattgatttgacttgagaaaagagaaaaactaataaaaaatgaaattgtatcta |
287 |
Q |
| |
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||||||||||| |||||||| ||| | |||||||||||||| |||||||| ||||||||| |
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|
| T |
18768896 |
tttataactataaatttgactcgaggagagagaaaaactaatcaaaaatgatgttgtatcta |
18768957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 33331996 - 33331956
Alignment:
| Q |
73 |
ataataatttgagaaagtaaatgtgattgaatgtaattaca |
113 |
Q |
| |
|
|||||||||||||||| |||| |||||| |||||||||||| |
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|
| T |
33331996 |
ataataatttgagaaaataaaagtgattaaatgtaattaca |
33331956 |
T |
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