View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7682_high_3 (Length: 564)
Name: NF7682_high_3
Description: NF7682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7682_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 26 - 548
Target Start/End: Original strand, 41544565 - 41545087
Alignment:
| Q |
26 |
ctagcacaatgaactcaacaccaaaatgttacaatgatctccatttcatattcatccccttaatggcacctggtcatcttcttcctatggtagacatggc |
125 |
Q |
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| T |
41544565 |
ctagcacaatgaactcaacaccaaaatgttacaatgatctccatttcatattcatccccttaatggcacctggtcatcttcttcctatggtagacatggc |
41544664 |
T |
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| Q |
126 |
aaagttattagcacgtcgcaaagttaaggtaacaatactcaccacacccctcaattccattcgatttaaatccaccatagatagagaaattcaattagga |
225 |
Q |
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| T |
41544665 |
aaagttattagcacgtcgcaaagttaaggtaacaatactcaccacaccccttaattccattcgatttcaatccaccatagatagagaaattcaattagga |
41544764 |
T |
|
| Q |
226 |
tcacaaatccaaattgttcacattaaatttccaagtgtagagtctggaatcccagagggatgtgaaagtgtcgacactttaccttcaatggatttaatgt |
325 |
Q |
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| T |
41544765 |
tcacaaatccaaattgttcacattaaatttccaagtgtagagtctggaatcccagagggatgtgaaagtgttgacactttaccttcaatggatttaatgt |
41544864 |
T |
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| Q |
326 |
ccaacttttacatagctttatgcaagatgcaaaattcattagaaaatgtttttgaaaagctaagaccaattccaagttgtgtaatttcagataaacacat |
425 |
Q |
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| T |
41544865 |
ccaacttttacatagctttatgcaagatgcaaaattcattagaaaatgtttttgaaaagctaagaccaattccaagttgtgtaatttcagataaacacat |
41544964 |
T |
|
| Q |
426 |
ttcctgtgtagctgaaattgcaatgaaattcaaagttccgagaattatattcgacgggactaattgttttcatctattatgcaatcacaatttacgcaat |
525 |
Q |
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| T |
41544965 |
ttcatgtgtagctgaaattgcaatgaaattcaaagttccgagaattatattcgacgggactaattgttttcatctattatgcaatcacaatttacgcaat |
41545064 |
T |
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| Q |
526 |
tttaataatattcctaatgaagg |
548 |
Q |
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| T |
41545065 |
tttaataatattcctaatgaagg |
41545087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 20157937 - 20157891
Alignment:
| Q |
88 |
atggcacctggtcatcttcttcctatggtagacatggcaaagttatt |
134 |
Q |
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| T |
20157937 |
atggcaccaggtcacattcttcctatggttgacatggcaaagttatt |
20157891 |
T |
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