View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7682_low_1 (Length: 765)
Name: NF7682_low_1
Description: NF7682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7682_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 13 - 634
Target Start/End: Original strand, 51960143 - 51960746
Alignment:
| Q |
13 |
aatatactgattaataaggactaaactattgttcatacatataacaatgcattatttcttccagcccagca---atcaaggactaatcaattatgctctt |
109 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| | ||||||||||||||||| |||||| |
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| T |
51960143 |
aatatagtgattaataaggactaaactatcgttcatacatataacaatgcattatttctgtcagccgagcacctaacaaggactaatcaattaagctctt |
51960242 |
T |
|
| Q |
110 |
acctcttaccaaacgggtgtttgtggaaagtttatgcttgtgaatcgcgagttcatgaccctttattagcgttgacacgaggctactatccctgtgttta |
209 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51960243 |
acctcttaccaaacgggtgtttgtggaaagtttaagcttgtgaatcgcgagttcatgaccctttattagcgttgacacgaggc-actatccctgtgttta |
51960341 |
T |
|
| Q |
210 |
tgatnnnnnnnntgtaggaaaggacctgccggcccactcctccattccacagctagcaacgtgctaccctccctctcctcgtggctgatgtctttttact |
309 |
Q |
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| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51960342 |
taataaaaaaa-tgtaggaaaggacctgccggcccactcctccattccacagctagcaacgtgctaccctccctctcctcgtggctgatgtctttttact |
51960440 |
T |
|
| Q |
310 |
ttgaaactaataatagcatattttataataaaacgagttctacgatgctgtcctaataagaaaacaaatttaaatcagtcattttttataaaataaagct |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51960441 |
ttgaaactaataatagcatattttataataaaacgagttctacgatgctgtcctaataagaaaacaaatttaaatcagtcattttttataaaataaagct |
51960540 |
T |
|
| Q |
410 |
aacttctatttttgtgcctcgtaaattcactttttcatttnnnnnnnnnnttgtactgtgcatattatagtcaaatacatagaaatgcataaagtataat |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || | | |||||||||||||||||||||||||||||||||||| |
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| T |
51960541 |
aacttctatttttgtgcctcgtaaattcactttttcattt-------aaatttt--------ttttatagtcaaatacatagaaatgcataaagtataat |
51960625 |
T |
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| Q |
510 |
tgttgactaaaatttgataattttactcagtctactccttttgtctcaaagactaaaattcgataacttcatgcataaagtataatttctttggaaccat |
609 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51960626 |
tgttgactaaaatttgataattttactcagtctactccttttgtctcaaagactaaaattcgataacttcatgcataaagtataatttctttggaac--- |
51960722 |
T |
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| Q |
610 |
gcatgtgaacaattttagggcaaac |
634 |
Q |
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|||||||||||||||||||||||| |
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| T |
51960723 |
-catgtgaacaattttagggcaaac |
51960746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 688 - 747
Target Start/End: Original strand, 51960760 - 51960819
Alignment:
| Q |
688 |
aatattatgggagtacatattagtttgagtacaggcacttacctttgtctcccttgctag |
747 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51960760 |
aatattatgggagtacatattagtttgagtacaggcacttacctttgtctcccttgctag |
51960819 |
T |
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