View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7682_low_11 (Length: 390)
Name: NF7682_low_11
Description: NF7682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7682_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 24760663 - 24761023
Alignment:
| Q |
18 |
attttaaactctctgttatctgattgtgggttttaaaataactctatactaaatttttaaaatttttgtactaacatattatatattctctcaataacaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24760663 |
attttaaactctctgttatctgattgtgggttttaaaataactctatactaaatttttaaaatttttgtactaacatattatatattctctcaataacaa |
24760762 |
T |
|
| Q |
118 |
tgagaactcgagggattcttagttcttccattcttacttttgaaaatccattagactaataattatctaaaaattttgtgatgtttctttcaaatctaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24760763 |
tgagaactcgagggattcttagttcttccattcttacttttgaaaatccattagactaataattatctaaaatttttgtgatgtttctttcaaatctaaa |
24760862 |
T |
|
| Q |
218 |
attgtgtatatgtgtataggtatgttgggatgcatattatttaatttggtagcatttggatcacatttgattggtcaaataatattctgagatcacttac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24760863 |
attgtgtatatgtgtataggtatgttgggatgcatattatttaatttggtagcatttggatcacatttgattggtcaaataatattctgagatcacttac |
24760962 |
T |
|
| Q |
318 |
ttctcatttgccacagttcatacatcaataccttcttttaatacttcagcttaaccatatt |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24760963 |
ttctcatttgccacagttcatacatcaatagcttcttttaatacttcagcttaaccatatt |
24761023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 52128098 - 52128458
Alignment:
| Q |
18 |
attttaaactctctgttatctgattgtgggttttaaaataactctatactaaatttttaaaatttttgtactaacatattatatattctctcaataacaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52128098 |
attttaaactctctgttatctgattgtgggttttaaaataactctatactaaatttttaaaatttttgtactaacatattatatattctctcaataacaa |
52128197 |
T |
|
| Q |
118 |
tgagaactcgagggattcttagttcttccattcttacttttgaaaatccattagactaataattatctaaaaattttgtgatgtttctttcaaatctaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52128198 |
tgagaactcgagggattcttagttcttccattcttacttttgaaaatccattagactaataattatctaaaatttttgtgatgtttctttcaaatctaaa |
52128297 |
T |
|
| Q |
218 |
attgtgtatatgtgtataggtatgttgggatgcatattatttaatttggtagcatttggatcacatttgattggtcaaataatattctgagatcacttac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52128298 |
attgtgtatatgtgtataggtatgttgggatgcatattatttaatttggtagcatttggatcacatttgattggtcaaataatattctgagatcacttac |
52128397 |
T |
|
| Q |
318 |
ttctcatttgccacagttcatacatcaataccttcttttaatacttcagcttaaccatatt |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
52128398 |
ttctcatttgccacagttcatacatcaatagcttcttttaatacttcagcttaaccatatt |
52128458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 4160451 - 4160093
Alignment:
| Q |
19 |
ttttaaactctctgttatctgattgtgggttttaaaataactctatactaa-atttttaaaatttttgtactaacatattatatattctctcaataacaa |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||| || |||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
4160451 |
ttttaaactctctgttatctgattatgggttttaaaataactttat--taattttttttaattttttgtactaacatattgtatattctctcaatgacaa |
4160354 |
T |
|
| Q |
118 |
tgagaactcgagggattcttagttcttccattcttacttttgaaaatccattagactaataa--ttatctaaaaattttgtgatgtttctttcaaatcta |
215 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||| |||||||||||||||||||| |
|
|
| T |
4160353 |
tgagaacttgagggattcttagttctaccattcttactttttaaaatccattagactaataactctatctaaattttttttgatgtttctttcaaatcta |
4160254 |
T |
|
| Q |
216 |
aaattgtgtatatgtgtataggtatgttgggatgcatattatttaatttggtagcatttggatcacatttgattggtcaaataatattctgagatcactt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4160253 |
aaattgtgtatatgtgtataggtatgttgggatgcatagtatttaatttggtagcatttggatcacatttgattggtcaaataatattctgagatcactt |
4160154 |
T |
|
| Q |
316 |
acttctcatttgccacagttcatacatcaat-accttcttttaatacttcagcttaaccat |
375 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
4160153 |
gcttctcatttgccacatttcatacatcaatgagcttctttaaatacttcagcttaaccat |
4160093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 318
Target Start/End: Original strand, 1179283 - 1179369
Alignment:
| Q |
232 |
tataggtatgttgggatgcatattatttaatttggtagcatttggatcacatttgattggtcaaataatattctgagatcacttact |
318 |
Q |
| |
|
|||| ||||| ||||||||| | ||||| ||||| ||||||||||||||||| || |||||||||||||||||||| ||| |||| |
|
|
| T |
1179283 |
tatatgtatgctgggatgcacagaatttattttggcagcatttggatcacattccatgggtcaaataatattctgagaacacctact |
1179369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 76 - 378
Target Start/End: Original strand, 3003920 - 3004225
Alignment:
| Q |
76 |
aaaatttttgtactaacatattatatattctctcaataacaatgagaactcgagggattcttagttcttccattcttacttttgaaaatccattagacta |
175 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
3003920 |
aaaatttatgtactaacatattatatattctctcaataacaatgagaacttgagggattcttagttctgccatttttactttttaaaatccattagacta |
3004019 |
T |
|
| Q |
176 |
ataatt--atctaaaaattttgtgatgtttctttcaaatctaaaattgtgtatatgtgtataggtatgttgggatgcatattatttaatttggtagcatt |
273 |
Q |
| |
|
|||| | |||||||| |||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3004020 |
ataactctatctaaaatttttgtgatgtttctttcaaatctaaaattgtgtttatgtgtaaagatatgttgggatgcatagtatttaatttggtagcatt |
3004119 |
T |
|
| Q |
274 |
tggatcacatttgattggtcaaataatattctgagatcacttacttctcatttgccacagttcatacatcaat-accttcttttaatacttcagcttaac |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
3004120 |
tggatcacatttgattggtcaaataatattctgagatcacctacttctcatttgccacagttcatacatcaatgagcttcttttaatacttcagcttaat |
3004219 |
T |
|
| Q |
373 |
catatt |
378 |
Q |
| |
|
|||||| |
|
|
| T |
3004220 |
catatt |
3004225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 71 - 378
Target Start/End: Original strand, 54653973 - 54654272
Alignment:
| Q |
71 |
tttttaaaatttttgtactaacatattatatattctctcaataacaatgagaactcgagggattcttagttcttccattcttacttttga-aaatccatt |
169 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||| |||| || |||| ||||||||| |
|
|
| T |
54653973 |
tttttaaaatttatgtactaacatattatatattctctcgataacaatgagaacttgagggatttttagttctgacattttttttttttttaaatccatt |
54654072 |
T |
|
| Q |
170 |
agactaataatt--atctaaaaattttgtgatgtttctttcaaatctaaaattgtgtatatgtgtataggtatgttgggatgcatattatttaatttggt |
267 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
54654073 |
agactaataactctatctaaaaattttgtgatgtttctttcaaatctaaaattgtgtat--gtgtaaaggtatgttgggatgcatagtatttaattt--- |
54654167 |
T |
|
| Q |
268 |
agcatttggatcacatttgattggtcaaataatattctgagatcacttacttctcatttgccacagttcatacatcaat-accttcttttaatacttcag |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||| |
|
|
| T |
54654168 |
-------ggatcacatttgattggtcaaataatattctgagatcacttacttctcatttgccagagttcatacatcaatgagcttcttttaatacttcag |
54654260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University