View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7682_low_16 (Length: 321)
Name: NF7682_low_16
Description: NF7682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7682_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 9040107 - 9039958
Alignment:
| Q |
18 |
tcatatacattcaaaaggaagcattctgtttaatagaatcgtagaagaaatggacttctaaattattcaaactttactgacaatgttttggaatttacaa |
117 |
Q |
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| T |
9040107 |
tcatatacattcaaaaggaagcattctgtttaattgaatcgtagaagaaatggacttctaaattattcaaactttactgacaatgttttggaatttacaa |
9040008 |
T |
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| Q |
118 |
gaggatagtataagaatggtgctacagnnnnnnnatttgaccaacaattt |
167 |
Q |
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| T |
9040007 |
gaggatagtataagaatggtgctacagtttttttatttgaccaacaattt |
9039958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 161 - 302
Target Start/End: Complemental strand, 9035240 - 9035103
Alignment:
| Q |
161 |
acaatttaggtaattgaattcataaaatcaagtgaattatataaatagtaaaggatgtttggcagtaattcttggattttatcctgactaatcaattaat |
260 |
Q |
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| T |
9035240 |
acaatttaggtaattgaattcataaaatcaagtgaattatataaatagtaaaggatgtttggcagtaattcttggattttatcctgagt----aattaat |
9035145 |
T |
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| Q |
261 |
ccaattccactatgcacgagtagatcaacgataatcttaata |
302 |
Q |
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| T |
9035144 |
ccaattccactatgcacgagtagatcaacgataatcttaata |
9035103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 9025069 - 9024943
Alignment:
| Q |
23 |
tacattcaaaaggaagcattctgtttaatagaatcgtagaagaaatggacttctaaattattcaaactttactgacaatgt-------tttggaatttac |
115 |
Q |
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| T |
9025069 |
tacattcaaaaggaagcattctgtttaatagaatcgtaggggaaatggacttctagattattcaaactttactgaaaatgttcgcaaatctggaatttac |
9024970 |
T |
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| Q |
116 |
aagaggatagtataagaatggtgctac |
142 |
Q |
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| T |
9024969 |
aagaggatagtataagaatggtgctac |
9024943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 9024922 - 9024889
Alignment:
| Q |
160 |
aacaatttaggtaattgaattcataaaatcaagt |
193 |
Q |
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| T |
9024922 |
aacaatttaggtaattgaattcataaaatcaagt |
9024889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 11832197 - 11832259
Alignment:
| Q |
153 |
tttgaccaacaatttaggtaattgaattcataaaatcaagtgaattatataaatagtaaagga |
215 |
Q |
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| T |
11832197 |
tttgaccaacagtttaggtaattgaattcataaaatcaagtgaattatataaatagtaaagga |
11832259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 218 - 315
Target Start/End: Original strand, 11832357 - 11832449
Alignment:
| Q |
218 |
tttggcagtaattcttggattttatcctgactaatcaattaatccaattccactatgcacgagtagatcaacgataatcttaatagccaagttctatt |
315 |
Q |
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| T |
11832357 |
tttggcagcaattcttggattttatcc---ctatt-aattaatccaattccactatgcatg-gtagatcaaggataatcttaatagccaagttctatt |
11832449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 1490984 - 1490858
Alignment:
| Q |
22 |
atacattcaaaaggaagcattctgtttaatagaatcgtagaagaaatggacttctaaattattcaaactttactgacaatgt-----tttggaatttaca |
116 |
Q |
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|||||||| ||||||||||||| ||||||||||||| ||| |||||||||||||| ||| || |||||||||||||| | | | ||||||| | | |
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| T |
1490984 |
atacattctaaaggaagcattccgtttaatagaatcataggggaaatggacttctagattctt-aaactttactgacagtttgcaaatctggaattgata |
1490886 |
T |
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| Q |
117 |
agaggatagtataagaatggtgctacag |
144 |
Q |
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| T |
1490885 |
agtggatagtataagaatggtgctacag |
1490858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 11832053 - 11832129
Alignment:
| Q |
22 |
atacattcaaaaggaagcattctgtttaatagaatcgtagaagaaatggacttctaaattattcaaactttactgaca |
99 |
Q |
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|||||||| ||||||||||||| |||||||||||| ||| |||||||||||||| |||||| |||||||||||||| |
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| T |
11832053 |
atacattccaaaggaagcattccttttaatagaatcataggggaaatggacttctagattatt-aaactttactgaca |
11832129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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