View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7682_low_17 (Length: 260)
Name: NF7682_low_17
Description: NF7682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7682_low_17 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 33990110 - 33990337
Alignment:
| Q |
16 |
atatctgaaatagttgaaacagcacgaaagcaccaaagtgcaaggcaattgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataaagc |
115 |
Q |
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| T |
33990110 |
atatctcaaatagttgaaacagcacgaaagcaccaaagtgcaaggcaattgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataaagc |
33990209 |
T |
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| Q |
116 |
aatacaatgaacatttggatcatcccagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatga |
215 |
Q |
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| T |
33990210 |
aatacaatgaacatttggatcatcccagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatga |
33990309 |
T |
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| Q |
216 |
ttcctatgttgttgatgagaaccaatct |
243 |
Q |
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| T |
33990310 |
ttcctatgttgttgatgagaaccaatct |
33990337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 82 - 243
Target Start/End: Original strand, 33959347 - 33959508
Alignment:
| Q |
82 |
aaggatttaactcttgtggttcaagacataaagcaatacaatgaacatttggatcatcccagagaagaaatcaagactctattagaagaaaatgatgcag |
181 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || | |||| |||||||||||||||||| |
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| T |
33959347 |
aaggatttatctcctgtggttcaagacataaagcaatacaatgatcatttggatcaccccagagaggaaataaatagtctaatagaagaaaatgatgcag |
33959446 |
T |
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| Q |
182 |
aagaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaatct |
243 |
Q |
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| T |
33959447 |
gagaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaatct |
33959508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 36 - 223
Target Start/End: Original strand, 33950654 - 33950841
Alignment:
| Q |
36 |
agcacgaaagcaccaaagtgcaaggcaattgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataaagcaatacaatgaacatttggat |
135 |
Q |
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| T |
33950654 |
agcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcaatacaatgatcatttggat |
33950753 |
T |
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| Q |
136 |
catcccagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatgattcctatg |
223 |
Q |
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| T |
33950754 |
caccccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgtacatgttcttctgagaatgattcctatg |
33950841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 33973298 - 33973510
Alignment:
| Q |
16 |
atatctgaaatagttgaaacagcacgaaagcaccaaagtgcaaggcaattgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataaagc |
115 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||| |||||| |||| |||||| ||||||||| ||| || || ||||| ||||||| |
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| T |
33973298 |
atatctgaaatagttgaaacagcacgaaagaaccaaagttcaaggctattgtttaggttaatcttaaaggatttatctcccgttgtacaagatataaagc |
33973397 |
T |
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| Q |
116 |
aatacaatgaacatttggatcatcccagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatga |
215 |
Q |
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| T |
33973398 |
attacaatgaacacttggatcaacccagagaagaaataaatagt-------------ttgat--agaagaaagtgcatgcaaatcttcttttgagaatga |
33973482 |
T |
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| Q |
216 |
ttcctatgttgttgatgagaaccaatct |
243 |
Q |
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| T |
33973483 |
ttcctacgttgttgatgagaaccaatct |
33973510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 10163 - 10283
Alignment:
| Q |
65 |
tgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataaagcaatacaatgaacatttggatcatcccagagaagaaatcaagactctatt |
164 |
Q |
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|||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| | |||| || ||||| ||||||| | || ||| | |
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| T |
10163 |
tgttgaggtcaaccttgaagggtttaactactgtggttcaagacataaagcaatacaatgaaaacatggaccaccccagcaaagaaataagcacactaat |
10262 |
T |
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| Q |
165 |
agaagaaaatgatgcagaaga |
185 |
Q |
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||||||||||| ||||||||| |
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| T |
10263 |
agaagaaaatgttgcagaaga |
10283 |
T |
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