View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7682_low_4 (Length: 553)

Name: NF7682_low_4
Description: NF7682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7682_low_4
NF7682_low_4
[»] chr3 (26 HSPs)
chr3 (13-537)||(51067539-51068069)
chr3 (169-240)||(25252883-25252954)
chr3 (163-240)||(27040604-27040681)
chr3 (163-240)||(39133781-39133858)
chr3 (163-240)||(5418046-5418123)
chr3 (163-240)||(39471139-39471216)
chr3 (163-259)||(9505882-9505973)
chr3 (165-256)||(20407794-20407885)
chr3 (163-253)||(30740735-30740825)
chr3 (163-203)||(23206997-23207037)
chr3 (271-323)||(54432868-54432920)
chr3 (163-235)||(54432944-54433016)
chr3 (166-253)||(33895922-33896009)
chr3 (178-244)||(30662819-30662885)
chr3 (163-253)||(38644271-38644361)
chr3 (163-253)||(52198779-52198869)
chr3 (169-223)||(54394118-54394172)
chr3 (163-240)||(7029138-7029215)
chr3 (215-260)||(25582801-25582846)
chr3 (163-240)||(40942903-40942975)
chr3 (166-202)||(7521833-7521869)
chr3 (163-203)||(26050194-26050234)
chr3 (169-241)||(32688568-32688640)
chr3 (163-235)||(41609317-41609389)
chr3 (163-203)||(46294334-46294374)
chr3 (163-203)||(53530253-53530293)
[»] chr6 (12 HSPs)
chr6 (169-244)||(4442051-4442126)
chr6 (163-240)||(7436703-7436780)
chr6 (173-328)||(33109845-33110000)
chr6 (163-240)||(7957057-7957134)
chr6 (169-253)||(6998585-6998669)
chr6 (164-240)||(18961849-18961925)
chr6 (186-322)||(22295382-22295518)
chr6 (169-240)||(10346221-10346292)
chr6 (271-322)||(25181143-25181194)
chr6 (271-321)||(472937-472987)
chr6 (162-203)||(10962519-10962560)
chr6 (271-323)||(13311459-13311511)
[»] chr5 (28 HSPs)
chr5 (166-253)||(26299452-26299539)
chr5 (169-253)||(27451037-27451121)
chr5 (163-256)||(1841021-1841114)
chr5 (163-239)||(5385150-5385226)
chr5 (169-240)||(26217432-26217503)
chr5 (163-253)||(34720110-34720200)
chr5 (163-240)||(3805433-3805510)
chr5 (163-256)||(19283628-19283721)
chr5 (163-253)||(34724086-34724176)
chr5 (169-239)||(34856955-34857025)
chr5 (163-240)||(11136723-11136800)
chr5 (163-240)||(26297908-26297985)
chr5 (186-253)||(19715799-19715866)
chr5 (163-253)||(10493382-10493467)
chr5 (165-239)||(18879625-18879699)
chr5 (163-240)||(27905483-27905560)
chr5 (163-235)||(29322066-29322138)
chr5 (163-239)||(32157446-32157522)
chr5 (169-240)||(14501406-14501477)
chr5 (163-234)||(22921441-22921512)
chr5 (178-253)||(39408737-39408812)
chr5 (270-328)||(4983937-4983995)
chr5 (178-240)||(27195441-27195503)
chr5 (270-328)||(41782804-41782862)
chr5 (163-200)||(20188353-20188390)
chr5 (163-240)||(43385801-43385878)
chr5 (163-203)||(1224567-1224607)
chr5 (163-203)||(38523347-38523387)
[»] chr7 (28 HSPs)
chr7 (169-240)||(17026058-17026129)
chr7 (163-240)||(36926412-36926489)
chr7 (163-235)||(388430-388502)
chr7 (163-323)||(5776542-5776702)
chr7 (177-323)||(8390115-8390261)
chr7 (163-240)||(42071523-42071600)
chr7 (164-240)||(26215721-26215797)
chr7 (163-235)||(45174640-45174712)
chr7 (272-323)||(18740836-18740887)
chr7 (163-242)||(30918933-30919012)
chr7 (164-203)||(42012275-42012314)
chr7 (169-235)||(5795559-5795625)
chr7 (178-240)||(35544228-35544290)
chr7 (178-328)||(45054811-45054961)
chr7 (163-199)||(10618029-10618065)
chr7 (163-239)||(43052285-43052361)
chr7 (169-240)||(3931409-3931480)
chr7 (169-240)||(7443838-7443909)
chr7 (272-323)||(24129857-24129908)
chr7 (165-240)||(33124103-33124173)
chr7 (169-240)||(37333706-37333777)
chr7 (177-239)||(18250707-18250769)
chr7 (163-240)||(7539711-7539788)
chr7 (163-208)||(27232475-27232520)
chr7 (163-240)||(33172197-33172269)
chr7 (271-323)||(28950282-28950334)
chr7 (272-320)||(33124200-33124248)
chr7 (164-200)||(37106150-37106186)
[»] chr1 (34 HSPs)
chr1 (169-240)||(24575309-24575380)
chr1 (163-240)||(5205170-5205247)
chr1 (163-233)||(38061686-38061756)
chr1 (163-240)||(15257906-15257978)
chr1 (163-240)||(28005738-28005815)
chr1 (163-240)||(29678164-29678241)
chr1 (163-240)||(32179336-32179413)
chr1 (162-240)||(36418522-36418600)
chr1 (162-256)||(44595831-44595920)
chr1 (163-223)||(42936498-42936558)
chr1 (169-240)||(7955658-7955729)
chr1 (270-328)||(13645688-13645746)
chr1 (166-240)||(48575796-48575870)
chr1 (163-256)||(30211765-30211858)
chr1 (163-240)||(35309011-35309088)
chr1 (166-203)||(35634963-35635000)
chr1 (163-240)||(45582159-45582236)
chr1 (163-240)||(47603469-47603546)
chr1 (163-203)||(23915886-23915926)
chr1 (163-235)||(24470579-24470651)
chr1 (163-223)||(35810113-35810173)
chr1 (163-203)||(43090124-43090164)
chr1 (164-203)||(15014019-15014058)
chr1 (272-323)||(24575412-24575463)
chr1 (270-328)||(43090004-43090062)
chr1 (162-203)||(23916133-23916174)
chr1 (271-320)||(38061570-38061619)
chr1 (163-236)||(46265670-46265743)
chr1 (179-240)||(50445501-50445562)
chr1 (163-203)||(14579128-14579168)
chr1 (163-203)||(19507941-19507981)
chr1 (163-203)||(36118233-36118273)
chr1 (161-205)||(42916861-42916905)
chr1 (169-237)||(45654430-45654498)
[»] chr8 (6 HSPs)
chr8 (163-253)||(9413311-9413401)
chr8 (163-244)||(32740282-32740363)
chr8 (178-328)||(43966900-43967050)
chr8 (163-203)||(27189650-27189690)
chr8 (163-208)||(34515558-34515603)
chr8 (163-203)||(15211997-15212037)
[»] chr4 (28 HSPs)
chr4 (163-240)||(52705596-52705673)
chr4 (162-240)||(22720746-22720824)
chr4 (163-240)||(7505427-7505504)
chr4 (163-238)||(25133936-25134011)
chr4 (169-240)||(50605464-50605535)
chr4 (166-240)||(12673728-12673802)
chr4 (162-235)||(9222840-9222913)
chr4 (163-240)||(9469431-9469507)
chr4 (169-238)||(40797163-40797232)
chr4 (179-240)||(51409174-51409235)
chr4 (163-235)||(12790211-12790283)
chr4 (169-253)||(49820387-49820471)
chr4 (163-253)||(43386537-43386627)
chr4 (178-240)||(46945235-46945297)
chr4 (163-253)||(51994086-51994176)
chr4 (163-240)||(19850135-19850212)
chr4 (163-203)||(28266836-28266876)
chr4 (163-235)||(44792846-44792918)
chr4 (163-235)||(55892736-55892808)
chr4 (169-240)||(21436316-21436387)
chr4 (169-240)||(38493664-38493735)
chr4 (272-323)||(48151714-48151765)
chr4 (163-323)||(48977007-48977167)
chr4 (162-241)||(49406368-49406447)
chr4 (270-328)||(52705703-52705761)
chr4 (186-255)||(5765256-5765325)
chr4 (186-255)||(5767500-5767569)
chr4 (163-240)||(52812970-52813047)
[»] chr2 (13 HSPs)
chr2 (163-328)||(2647572-2647737)
chr2 (169-253)||(20986073-20986157)
chr2 (162-240)||(26435769-26435847)
chr2 (163-240)||(36538080-36538157)
chr2 (169-225)||(34116829-34116885)
chr2 (169-235)||(33830899-33830965)
chr2 (178-256)||(40675188-40675261)
chr2 (163-200)||(11027290-11027327)
chr2 (163-240)||(27633145-27633222)
chr2 (163-256)||(29478046-29478139)
chr2 (163-199)||(18053397-18053433)
chr2 (188-240)||(12139394-12139446)
chr2 (271-323)||(33830989-33831041)
[»] scaffold0658 (1 HSPs)
scaffold0658 (163-240)||(6453-6530)
[»] scaffold0135 (1 HSPs)
scaffold0135 (162-235)||(33493-33566)
[»] scaffold0043 (1 HSPs)
scaffold0043 (163-240)||(16495-16572)
[»] scaffold0106 (1 HSPs)
scaffold0106 (163-237)||(26496-26570)
[»] scaffold0316 (1 HSPs)
scaffold0316 (163-240)||(18713-18790)
[»] scaffold0224 (1 HSPs)
scaffold0224 (161-205)||(8055-8099)


Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 13 - 537
Target Start/End: Original strand, 51067539 - 51068069
Alignment:
Q  13 ccctgccactggttatcatataccgagtttgtttgtttaatattgatctcccaaaaatttcaaaagatcaaagaagaacctttactgtagtnnnnnnnn- 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||             
T  51067539 ccctgccactggttatcatataccgagtttgtttgtttaatattgatctcccaaaaatttcaaaagatcaaagaagaacctttactttagtaaaaaaaaa 51067638  T
Q  112 ----cagtgaatttataaaaagggtgagttcatattagatgtataatgtatacta-ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaat 206  Q
        ||||||||||||||||||||||||||||||||||||| || |||||||||| ||| |||||||||||||||| |||||||||||||| ||||||||    
T  51067639 aaaacagtgaatttataaaaagggtgagttcatattagatgcatcatgtatactaaggcggaaaatgagtcgagtcaaatcgaacttgtctaagctcaat 51067738  T
Q  207 tctaatcgataagaattagttcggctcgaaactcaacttgacttcgatacaaatcannnnnnnggctcgagttcgactcgtttaaaattaacgaacaact 306  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||       |||||||||||||||| ||||||||||||||||||||    
T  51067739 tctaatcgataagaattagttcggctcgaaactcaactcgacttcgatacaaatcatttttttggctcgagttcgactcatttaaaattaacgaacaact 51067838  T
Q  307 cgattcagctcgttaggatcatgaaccacaaaaagtttgcctaaaaaattaagcatatagaaaatttgcttaaaaacgtgttatctactttnnnnnnnga 406  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||       ||    
T  51067839 cgattcaactcgttaggatcatgaaccacaaaaagtttgcctaaaaaatcaagcatatagaaaatttgcttaaaaacgtgttatctaccttaaaaaaaga 51067938  T
Q  407 tacaatagtcttgtttatagccttattcacctctcaatgttacataaacaaccgatgcgggacttgttttctctcttgttagacaaaacacatgttatct 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51067939 tacaatagtcttgtttatagccttattcacctctcaatgttacataaacaaccgatgtgggacttgttttctctcttgttagacaaaacacatgttatct 51068038  T
Q  507 acctatttctatgttatatattacaagttgt 537  Q
    |||||||||||||||||||||||||||||||    
T  51068039 acctatttctatgttatatattacaagttgt 51068069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 25252883 - 25252954
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||||||||||||||| |||||| ||||||||||||| || | |||||||||||| ||||||||| ||||||    
T  25252883 aaatgagtcgagtcgagtcgaacctgtctgagctcaactcgactcgataagaattggttcggctcaaaactc 25252954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 27040681 - 27040604
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| |||||||||||||||| |||||||||| ||||||||| || | ||| ||||| || ||||||||||||||||    
T  27040681 ggctggaaatgagtcgagtcgagtcgaacttgtttgagctcaactcgactcgttaagatttggttcggctcgaaactc 27040604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 39133781 - 39133858
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||||||||||| ||||||||||  |||| ||||||||||||  || | |||||||||||| ||||||||||||||||    
T  39133781 ggctgaaaatgattcgagtcgaactgaacctgtctgagctcagctcgactcgataagaattggttcggctcgaaactc 39133858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 5418046 - 5418123
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| |||||||||||||||| ||||||||||||||| ||   |  | |||||||||||| ||||||||||||||||    
T  5418046 ggctggaaatgagtcgagtcgagtcgaacttgtctgagttcggcttgactcgataagaattggttcggctcgaaactc 5418123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 39471216 - 39471139
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| ||||||||||||||||| ||||| ||||||| |||   || | |||||||||||| ||||||||||||||||    
T  39471216 ggctggaaatgagtcgagtcgaaccgaacctgtctgaactcggctcgactcgataagaattggttcggctcgaaactc 39471139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 259
Target Start/End: Complemental strand, 9505973 - 9505882
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcgatacaaa 259  Q
    |||||||||||| |||||||||| ||||| ||||||| ||| | ||     ||||||||||  ||||||||||||||||||| || |||||||||||    
T  9505973 ggctgaaaatgaatcgagtcgaaccgaacctgtctgaactcgactc-----gataagaattgattcggctcgaaactcaactcgagttcgatacaaa 9505882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 20407885 - 20407794
Alignment:
Q  165 ctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcgatac 256  Q
    |||||||||||||||||||| || ||| ||| |||||||   || | |||||||| ||| |||||||||||||||| ||| || ||||||||    
T  20407885 ctgaaaatgagtcgagtcgagtccaacgtgtttgagctcggctcgactcgataagtattggttcggctcgaaactcgactcgagttcgatac 20407794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 253
Target Start/End: Original strand, 30740735 - 30740825
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcga 253  Q
    ||||| ||||||||||||||||| ||||||||||||||||  | |  | |||||||||| | ||| |||||||||||| ||| || |||||    
T  30740735 ggctggaaatgagtcgagtcgaaccgaacttgtctgagctttacttgactcgataagaaatggtttggctcgaaactcgactcgagttcga 30740825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 23207037 - 23206997
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctc 203  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  23207037 ggctgaaaatgagtcgagtcgaaccgaacctgtctgagctc 23206997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 54432920 - 54432868
Alignment:
Q  271 gctcgagttcgactcgtttaaaattaacgaacaactcgattcagctcgttagg 323  Q
    ||||||||||| ||||||||||||| |||||||||||| |||  |||||||||    
T  54432920 gctcgagttcggctcgtttaaaattcacgaacaactcggttcgactcgttagg 54432868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 54433016 - 54432944
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcga 235  Q
    ||||| |||||||||||||| | |||||  ||||||||||| | || | |||||||||||| |||||||||||    
T  54433016 ggctggaaatgagtcgagtcaagtcgaatatgtctgagctcgactcgactcgataagaattggttcggctcga 54432944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 253
Target Start/End: Original strand, 33895922 - 33896009
Alignment:
Q  166 tgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcga 253  Q
    |||||||||||| ||||||| ||||||||||||||||| | || | || ||||||| | |||| |||| |||||| ||| || |||||    
T  33895922 tgaaaatgagtcaagtcgaaccgaacttgtctgagctcgactcgactcaataagaaatggttcagctccaaactcgactcgagttcga 33896009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 30662885 - 30662819
Alignment:
Q  178 gagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaact 244  Q
    ||||||| | |||| ||||||||||| |||| | ||||||||||||  ||||| |||||||||||||    
T  30662885 gagtcgagttgaacctgtctgagctcgattcgactcgataagaattgattcggttcgaaactcaact 30662819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 38644361 - 38644271
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcga 253  Q
    ||||| |||||||| |||||||| ||||| |||||||||||   || | | |||||||||| ||||||||| |||||| ||| || |||||    
T  38644361 ggctggaaatgagtggagtcgaaccgaacctgtctgagctcggctcgactagataagaatttgttcggctcaaaactcgactcgagttcga 38644271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 253
Target Start/End: Original strand, 52198779 - 52198869
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcga 253  Q
    ||||| ||||||||||||||||| ||||| |||||||||||   || | |||||| ||||  | |||||||||||||| ||| || |||||    
T  52198779 ggctggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgatatgaatctgctcggctcgaaactcgactcgagttcga 52198869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 54394172 - 54394118
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaatt 223  Q
    ||||||||||||||||||||||| |||||||| |||| || | ||| ||||||||    
T  54394172 aaatgagtcgagtcgaatcgaacctgtctgagttcaactcgactcgttaagaatt 54394118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 7029138 - 7029215
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| |||||||||||||| | |||||||  |||||| || | || | |||||||||||| |||| |||||||||||    
T  7029138 ggctggaaatgagtcgagtccagtcgaactcatctgagttcgactcgactcgataagaatttgttcagctcgaaactc 7029215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 25582801 - 25582846
Alignment:
Q  215 ataagaattagttcggctcgaaactcaacttgacttcgatacaaat 260  Q
    ||||||||| ||||||||| |||||||||||||  |||||||||||    
T  25582801 ataagaatttgttcggctcaaaactcaacttgagctcgatacaaat 25582846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 40942903 - 40942975
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| |||||||||||||||||||     ||||||||||| | || | |||||||||||| ||||| ||||||||||    
T  40942903 ggctggaaatgagtcgagtcgaatc-----tgtctgagctcgactcaactcgataagaattggttcgactcgaaactc 40942975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 7521869 - 7521833
Alignment:
Q  166 tgaaaatgagtcgagtcgaatcgaacttgtctgagct 202  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  7521869 tgaaaatgagtcgagtcgaaccgaacttatctgagct 7521833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 26050234 - 26050194
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctc 203  Q
    |||||||||||||| ||||||| |||||| |||||||||||    
T  26050234 ggctgaaaatgagttgagtcgagtcgaacatgtctgagctc 26050194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 32688568 - 32688640
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactca 241  Q
    ||||||||||||| ||| ||||  |||||||||||   || | ||||||| |||| |||||||||||||||||    
T  32688568 aaatgagtcgagttgaaccgaatctgtctgagctcggctcgactcgataaaaattggttcggctcgaaactca 32688640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 41609317 - 41609389
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcga 235  Q
    ||||| ||||||||||||||||| ||||| || ||||||||   || | |||||||||||| ||||| |||||    
T  41609317 ggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttcgactcga 41609389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 46294374 - 46294334
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctc 203  Q
    ||||| |||||||||||||||| ||||||| ||||||||||    
T  46294374 ggctggaaatgagtcgagtcgagtcgaactcgtctgagctc 46294334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 53530293 - 53530253
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctc 203  Q
    ||||| ||||||||||| ||||||||||| |||||||||||    
T  53530293 ggctggaaatgagtcgaatcgaatcgaacatgtctgagctc 53530253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 4442126 - 4442051
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaact 244  Q
    ||||||||||||||||| ||||| ||||||||||||| || | ||||||||||||| |||||||||||||||||||    
T  4442126 aaatgagtcgagtcgaaccgaacctgtctgagctcaactcgactcgataagaattaattcggctcgaaactcaact 4442051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 7436703 - 7436780
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||||||||| |||||||||||||||||| ||||||||||| | || | |||||||||| | ||||||||||||||||    
T  7436703 ggctgaaaataagtcgagtcgaatcgaacctgtctgagctcgactcgactcgataagaaatggttcggctcgaaactc 7436780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 173 - 328
Target Start/End: Original strand, 33109845 - 33110000
Alignment:
Q  173 gagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcgatacaaatcannnnnnnggc 272  Q
    |||||||||||| ||||||||||||||||||   || | |||||||||||| |||||||||||||||| ||| || ||| | || || |        |||    
T  33109845 gagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcaaaacgaacctttttttgggc 33109944  T
Q  273 tcgagttcgactcgtttaaaattaacgaacaactcgattcagctcgttaggatcat 328  Q
    ||||||||| |||||||||| || | || ||||||||||  |||||||||| ||||    
T  33109945 tcgagttcggctcgtttaaagttcatgagcaactcgatttggctcgttaggttcat 33110000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 7957057 - 7957134
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| ||||||||||||||||  ||||| |||||||||||   || | |||||||||||| ||||||||||||||||    
T  7957057 ggctggaaatgagtcgagtcgacccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactc 7957134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 253
Target Start/End: Original strand, 6998585 - 6998669
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcga 253  Q
    ||||||||||||||||| ||||| |||||||||||   || | |||||||||||| | |||||||||||||| ||| || |||||    
T  6998585 aaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaatttgctcggctcgaaactcgactcgagttcga 6998669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 18961849 - 18961925
Alignment:
Q  164 gctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||| |||||||||||||| |||||||| || ||||||||   || | |||||||||||| ||||||||||||||||    
T  18961849 gctggaaatgagtcgagtcaaatcgaacctgcctgagctcggctcgactcgataagaattggttcggctcgaaactc 18961925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 186 - 322
Target Start/End: Original strand, 22295382 - 22295518
Alignment:
Q  186 tcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcgatacaaatcannnnnnnggctcgagttcgactc 285  Q
    |||||||||||| |||||   || | ||||| |||||| |||||||||||||||| ||| || ||||| |||||          |||||||||||| |||    
T  22295382 tcgaacttgtcttagctcggctcaactcgattagaattggttcggctcgaaactcgactcgagttcgaaacaaactttttttccggctcgagttcggctc 22295481  T
Q  286 gtttaaaattaacgaacaactcgattcagctcgttag 322  Q
     ||||||||| |||| ||||||| |||||||||||||    
T  22295482 atttaaaattcacgagcaactcggttcagctcgttag 22295518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 10346221 - 10346292
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||||||| ||||||| ||||| ||| |||||||   || | |||||||||||| ||||||||||||||||    
T  10346221 aaatgagtcaagtcgaaccgaacctgtttgagctcggctcgattcgataagaattggttcggctcgaaactc 10346292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 322
Target Start/End: Complemental strand, 25181194 - 25181143
Alignment:
Q  271 gctcgagttcgactcgtttaaaattaacgaacaactcgattcagctcgttag 322  Q
    ||||||||||||||||||||||||| || ||||  ||||||| |||||||||    
T  25181194 gctcgagttcgactcgtttaaaattcacaaacagttcgattcggctcgttag 25181143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 472937 - 472987
Alignment:
Q  271 gctcgagttcgactcgtttaaaattaacgaacaactcgattcagctcgtta 321  Q
    |||||||||||||||||||||| || |||||||  | ||||||||||||||    
T  472937 gctcgagttcgactcgtttaaagttcacgaacagtttgattcagctcgtta 472987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 10962560 - 10962519
Alignment:
Q  162 aggctgaaaatgagtcgagtcgaatcgaacttgtctgagctc 203  Q
    |||||| ||||||||||||||||||||||| | |||||||||    
T  10962560 aggctggaaatgagtcgagtcgaatcgaacctatctgagctc 10962519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 13311459 - 13311511
Alignment:
Q  271 gctcgagttcgactcgtttaaaattaacgaacaactcgattcagctcgttagg 323  Q
    ||||||||||| |||||||||| || |||||| |||||||||  |||||||||    
T  13311459 gctcgagttcggctcgtttaaagttcacgaaccactcgattcgactcgttagg 13311511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 166 - 253
Target Start/End: Original strand, 26299452 - 26299539
Alignment:
Q  166 tgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcga 253  Q
    ||||||||||||||||||| || ||||||||||||||| |||| | |||||||||||| |||||||||||||||| ||| || |||||    
T  26299452 tgaaaatgagtcgagtcgagtcaaacttgtctgagctcgattcgactcgataagaattggttcggctcgaaactcgactcgagttcga 26299539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 169 - 253
Target Start/End: Complemental strand, 27451121 - 27451037
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcga 253  Q
    |||||||||||||||| || ||| ||||||||||| |||| | |||||||||||| |||||||||||||||||||| || |||||    
T  27451121 aaatgagtcgagtcgagtcaaacctgtctgagctcgattcgactcgataagaattggttcggctcgaaactcaactcgagttcga 27451037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 163 - 256
Target Start/End: Complemental strand, 1841114 - 1841021
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcgatac 256  Q
    ||||| ||||||||||||||||| | ||| ||||||||||| | || | |||||||||||| |||||||||||||||| ||| || ||||||||    
T  1841114 ggctggaaatgagtcgagtcgaaccaaacctgtctgagctcgactcgactcgataagaattggttcggctcgaaactcgactcgagttcgatac 1841021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 5385226 - 5385150
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaact 239  Q
    ||||| ||||||||||||||||||||||||| ||||||||| |||| | ||||| | |||| |||||||||||||||    
T  5385226 ggctggaaatgagtcgagtcgaatcgaacttttctgagctcgattcgattcgattaaaatttgttcggctcgaaact 5385150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 26217432 - 26217503
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||||||||||||||| ||||||||||||||||||  ||| | || ||||||||| ||||||||||||||||    
T  26217432 aaatgagtcgagtcgagtcgaacttgtctgagctcggttcgactcaataagaattggttcggctcgaaactc 26217503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 34720200 - 34720110
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcga 253  Q
    ||||| |||||||||||||||| |||||| |||| |||||| |||| | |||||||||||| |||||| ||||||||| ||| || |||||    
T  34720200 ggctggaaatgagtcgagtcgagtcgaacctgtccgagctcgattcgactcgataagaattggttcggttcgaaactcgactcgagttcga 34720110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 3805510 - 3805433
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| ||||||||||||||||| ||||| |||||||||||   || | |||||||||||| ||||||||||||||||    
T  3805510 ggctggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactc 3805433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 256
Target Start/End: Complemental strand, 19283721 - 19283628
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcgatac 256  Q
    ||||| ||||||||||||| ||||||||||| ||||||||| | || | |||||||||||| |||  ||||||||||| ||| || ||||||||    
T  19283721 ggctggaaatgagtcgagtagaatcgaacttatctgagctcgactcgactcgataagaattggtttagctcgaaactcgactcgagttcgatac 19283628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 34724176 - 34724086
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcga 253  Q
    ||||| |||||||||||||||| |||||| |||| |||||| |||| | |||||||||||| |||| | ||||||||| ||| || |||||    
T  34724176 ggctggaaatgagtcgagtcgagtcgaacctgtccgagctcgattcgactcgataagaattggttcagttcgaaactcgactcgagttcga 34724086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 34856955 - 34857025
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaact 239  Q
    |||||||||||||||| |||||  |||||||| || |||| | |||||||||||| |||||||||||||||    
T  34856955 aaatgagtcgagtcgagtcgaatctgtctgagttcgattcgactcgataagaattggttcggctcgaaact 34857025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 11136800 - 11136723
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| |||||||||||||||| |||||||||||||| |||   || | |||||||||||  ||||||||||||||||    
T  11136800 ggctggaaatgagtcgagtcgagtcgaacttgtctgaactcggctcgattcgataagaataggttcggctcgaaactc 11136723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 26297908 - 26297985
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||||||||||||||| || | || ||| ||| ||||||| |||| | |||||||||||| ||||||||||||||||    
T  26297908 ggctgaaaatgagtcgaatcaagtcaaacctgtgtgagctcgattcgactcgataagaattggttcggctcgaaactc 26297985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 19715799 - 19715866
Alignment:
Q  186 tcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcga 253  Q
    |||||||||||||||||| |||| | ||||||| |||| |||||||||||||||| ||| || |||||    
T  19715799 tcgaacttgtctgagctcgattcgactcgataataattggttcggctcgaaactcgactcgagttcga 19715866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 253
Target Start/End: Original strand, 10493382 - 10493467
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcga 253  Q
    ||||| ||||||||||||||||||||||| |||||||||     || | |||||||||| | |||||||||||||||| ||| || |||||    
T  10493382 ggctggaaatgagtcgagtcgaatcgaacctgtctgagc-----tcgactcgataagaaatggttcggctcgaaactcgactcgagttcga 10493467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 18879625 - 18879699
Alignment:
Q  165 ctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaact 239  Q
    ||||||||||||||||||||| ||||  |||||||| ||   || | |||||||||||| |||||||||||||||    
T  18879625 ctgaaaatgagtcgagtcgaaccgaatctgtctgagttcggctcgactcgataagaattggttcggctcgaaact 18879699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 27905483 - 27905560
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| ||||||||||||||||| ||||||| |||||||||   || | | |||||||||| ||||||| ||||||||    
T  27905483 ggctggaaatgagtcgagtcgaaccgaacttatctgagctcggctcgacttgataagaattggttcggcacgaaactc 27905560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 29322066 - 29322138
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcga 235  Q
    ||||| ||||||||||||||||| ||||| || ||||||||   || | |||||||||||| |||||||||||    
T  29322066 ggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttcggctcga 29322138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 32157522 - 32157446
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaact 239  Q
    ||||| |||||||||||||||||  |||| |||||| ||||   || | |||||||||||| |||||||||||||||    
T  32157522 ggctggaaatgagtcgagtcgaactgaacctgtctgggctcggctcgactcgataagaattggttcggctcgaaact 32157446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 14501477 - 14501406
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||||||||| ||||| ||||| ||||||||||||   || | |||||||||||  ||||||||||||||||    
T  14501477 aaatgagtcgcgtcgagtcgaatttgtctgagctcggctcgactcgataagaatcggttcggctcgaaactc 14501406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 22921441 - 22921512
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcg 234  Q
    ||||| ||||||||||||||||||||| | ||||||||||| | || | ||||||| |||| |||| |||||    
T  22921441 ggctggaaatgagtcgagtcgaatcgagcctgtctgagctcgactccactcgataaaaattggttctgctcg 22921512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 39408737 - 39408812
Alignment:
Q  178 gagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcga 253  Q
    ||||||| ||| || |||| |||||| |||| | |||||||||||| |||||||||||||||| ||| || |||||    
T  39408737 gagtcgagtcgtacctgtccgagctcgattcgactcgataagaattggttcggctcgaaactcgactcgagttcga 39408812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 328
Target Start/End: Complemental strand, 4983995 - 4983937
Alignment:
Q  270 ggctcgagttcgactcgtttaaaattaacgaacaactcgattcagctcgttaggatcat 328  Q
    |||||||||||| |||||||||| || |||| ||||||| ||| |||||||||| ||||    
T  4983995 ggctcgagttcggctcgtttaaagttcacgagcaactcggttcggctcgttaggttcat 4983937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 27195441 - 27195503
Alignment:
Q  178 gagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||||| |||||| ||||||||||| | || | || ||||||||| ||||||||||||||||    
T  27195441 gagtcgagtcgaacatgtctgagctcgactcgactcaataagaattggttcggctcgaaactc 27195503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 41782804 - 41782862
Alignment:
Q  270 ggctcgagttcgactcgtttaaaattaacgaacaactcgattcagctcgttaggatcat 328  Q
    |||||||||||| |||||||||| || |||| ||||||| ||| |||||||||| ||||    
T  41782804 ggctcgagttcggctcgtttaaagttcacgagcaactcggttcggctcgttaggttcat 41782862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 20188353 - 20188390
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgag 200  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  20188353 ggctggaaatgagtcaagtcgaatcgaacttgtctgag 20188390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 43385801 - 43385878
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| ||||| | |||||||| ||||||| ||||||||||   || | |||||||||||| |||| |||||||||||    
T  43385801 ggctggaaatgtgccgagtcgagtcgaactcgtctgagctcggctcgactcgataagaattggttcagctcgaaactc 43385878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 1224567 - 1224607
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctc 203  Q
    ||||||||||||||||| ||||||||||| ||||| |||||    
T  1224567 ggctgaaaatgagtcgaatcgaatcgaacctgtctaagctc 1224607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 38523387 - 38523347
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctc 203  Q
    ||||| ||||||||||||||||| ||||| |||||||||||    
T  38523387 ggctggaaatgagtcgagtcgaaccgaacctgtctgagctc 38523347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 17026129 - 17026058
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||||||||||||||| |||||||||||||||||| | || | |||||||||||| ||||||||||||||||    
T  17026129 aaatgagtcgagtcgagtcgaacttgtctgagctcgactcgactcgataagaattggttcggctcgaaactc 17026058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 36926412 - 36926489
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| ||||||||||||||||||||||| |||||||||||   || | |||||||||||| ||||||||||||||||    
T  36926412 ggctggaaatgagtcgagtcgaatcgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactc 36926489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 388430 - 388502
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcga 235  Q
    ||||| ||||||||||||||||| |||||||| ||||||||  ||| | |||||||||||| |||||||||||    
T  388430 ggctggaaatgagtcgagtcgaaccgaacttgcctgagctcggttcgactcgataagaattggttcggctcga 388502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 323
Target Start/End: Complemental strand, 5776702 - 5776542
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcgatacaaatca 262  Q
    ||||| ||||||||||||||||| ||||| || ||||||||   || | ||||||||||||||||| |||||||||||  || || ||||| |  ||  |    
T  5776702 ggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattagttcagctcgaaactcggctcgagttcgacaagaacta 5776603  T
Q  263 nnnnnnnggctcgagttcgactcgtttaaaattaacgaacaactcgattcagctcgttagg 323  Q
            ||||||||||| ||||||||||||| |||||||| ||| ||| ||||||||||    
T  5776602 ttttttcagctcgagttcggctcgtttaaaattcacgaacaattcggttcggctcgttagg 5776542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 323
Target Start/End: Complemental strand, 8390261 - 8390115
Alignment:
Q  177 cgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcgatacaaatcannnnnnnggctcga 276  Q
    |||||||| |||| ||||||||||||| | || | |||||||||||  | || ||||||||||||||| || ||||||||||| |         ||||||    
T  8390261 cgagtcgagtcgaccttgtctgagctcgactcgactcgataagaatcggctcagctcgaaactcaactcgaattcgatacaaacctttttcttagctcga 8390162  T
Q  277 gttcgactcgtttaaaattaacgaacaactcgattcagctcgttagg 323  Q
    ||| | |||||||||  || |||||||||||| ||| ||||||||||    
T  8390161 gtttggctcgtttaatgttcacgaacaactcggttcggctcgttagg 8390115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 42071523 - 42071600
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||||||||||||||||||||| | ||| |||||||||||   || | || ||||||||| ||||||||||||||||    
T  42071523 ggctgaaaatgagtcgagtcgaaccaaacatgtctgagctcggctcgactcaataagaattggttcggctcgaaactc 42071600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 26215721 - 26215797
Alignment:
Q  164 gctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||| ||||||||||||||||| ||||| || ||||||||   || | |||||||||||| ||||||||||||||||    
T  26215721 gctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttcggctcgaaactc 26215797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 45174640 - 45174712
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcga 235  Q
    ||||||||||||||||||||||| ||||| |||||||||||   || | || ||||||||| |||||||||||    
T  45174640 ggctgaaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcaataagaattggttcggctcga 45174712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 18740887 - 18740836
Alignment:
Q  272 ctcgagttcgactcgtttaaaattaacgaacaactcgattcagctcgttagg 323  Q
    ||||||||||||||||||||| || |||||||||||| ||| ||||||||||    
T  18740887 ctcgagttcgactcgtttaaagttcacgaacaactcggttcggctcgttagg 18740836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 30918933 - 30919012
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaa 242  Q
    ||||| |||||| |||||||||| ||||| | ||||||||| | || | |||||||||||| |||| |||||||||||||    
T  30918933 ggctggaaatgaatcgagtcgaaccgaacctatctgagctcgactcaactcgataagaattggttcagctcgaaactcaa 30919012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 42012314 - 42012275
Alignment:
Q  164 gctgaaaatgagtcgagtcgaatcgaacttgtctgagctc 203  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  42012314 gctggaaatgagtcgagtcgaatcgaacttgtctgagctc 42012275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 5795625 - 5795559
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcga 235  Q
    ||||||||||||||||||||||| || ||||||||   || | |||||||||||| |||||||||||    
T  5795625 aaatgagtcgagtcgaatcgaacctgcctgagctcggctcgactcgataagaattggttcggctcga 5795559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 35544290 - 35544228
Alignment:
Q  178 gagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||||| || ||| ||||||||||| |||| | |||||||||||| ||||||||||||||||    
T  35544290 gagtcgagtcaaacatgtctgagctcgattcgactcgataagaattggttcggctcgaaactc 35544228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 178 - 328
Target Start/End: Original strand, 45054811 - 45054961
Alignment:
Q  178 gagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcgatacaaatcannnnnnnggctcgag 277  Q
    ||||||| |||||||||||||||||    || | |||||||||||| |||||||| ||||||| ||| || ||| | || || |        ||||||||    
T  45054811 gagtcgagtcgaacttgtctgagcttggctcgactcgataagaattggttcggcttgaaactcgactcgagttcaaaacgaacctttttttgggctcgag 45054910  T
Q  278 ttcgactcgtttaaaattaacgaacaactcgattcagctcgttaggatcat 328  Q
    |||| |||||||||| || |||| ||||||| ||| |||||||||| ||||    
T  45054911 ttcggctcgtttaaagttcacgagcaactcggttcggctcgttaggttcat 45054961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 10618029 - 10618065
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctga 199  Q
    ||||||||||||||||||||||||||||| |||||||    
T  10618029 ggctgaaaatgagtcgagtcgaatcgaacctgtctga 10618065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 43052285 - 43052361
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaact 239  Q
    ||||| |||| |||||||||||| ||||| || ||||||||   || | |||||||||||| |||||||||||||||    
T  43052285 ggctggaaatcagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttcggctcgaaact 43052361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 3931480 - 3931409
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||||||| ||||| || ||||| |||||||||||   || | |||||||||||| ||||||||||||||||    
T  3931480 aaatgagttgagtccaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactc 3931409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 7443838 - 7443909
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||||||||||||||| ||||  |||||||||||   || | |||||||||||| |||||| |||||||||    
T  7443838 aaatgagtcgagtcgaaccgaatctgtctgagctcggctcgactcgataagaattggttcggttcgaaactc 7443909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 24129908 - 24129857
Alignment:
Q  272 ctcgagttcgactcgtttaaaattaacgaacaactcgattcagctcgttagg 323  Q
    |||| ||||||||| ||||||||||| ||||||||| |||| ||||||||||    
T  24129908 ctcgtgttcgactcatttaaaattaaagaacaactcaattcggctcgttagg 24129857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 33124103 - 33124173
Alignment:
Q  165 ctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||||||||||||||||| ||||||||| ||||||||     || | |||||||||||||| | ||||||||||||    
T  33124103 ctgaaaatgagtcgagtcaaatcgaactcgtctgagc-----tcgactcgataagaattagcttggctcgaaactc 33124173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 37333706 - 37333777
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||||||||||||||| ||||| || |||||||    || | |||||||||||| ||||||||||||||||    
T  37333706 aaatgagtcgagtcgaaccgaacctgcctgagcttggctcgactcgataagaattggttcggctcgaaactc 37333777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 18250769 - 18250707
Alignment:
Q  177 cgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaact 239  Q
    |||||||| || ||||||| ||||||| | || | |||||||||||| |||||||||||||||    
T  18250769 cgagtcgagtcaaacttgtttgagctcgactcgactcgataagaattggttcggctcgaaact 18250707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 7539788 - 7539711
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| ||||||| ||||| || ||||||| ||||||||||   || | |||||||||||| |||| |||||||||||    
T  7539788 ggctggaaatgagccgagttgagtcgaactcgtctgagctcggctcgactcgataagaattggttcagctcgaaactc 7539711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 27232520 - 27232475
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattc 208  Q
    ||||| ||||||||||||||||||||||  ||||||||||| ||||    
T  27232520 ggctggaaatgagtcgagtcgaatcgaatctgtctgagctcgattc 27232475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 33172269 - 33172197
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| ||||||||||||||||| ||||||  ||||||||| ||     |||||||||||| | ||||||||||||||    
T  33172269 ggctggaaatgagtcgagtcgaaccgaactcatctgagctcgat-----tcgataagaattggctcggctcgaaactc 33172197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 28950334 - 28950282
Alignment:
Q  271 gctcgagttcgactcgtttaaaattaacgaacaactcgattcagctcgttagg 323  Q
    ||||||||||| |||||||||| || |||||||  ||| ||||||||||||||    
T  28950334 gctcgagttcggctcgtttaaagttcacgaacagttcggttcagctcgttagg 28950282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 33124200 - 33124248
Alignment:
Q  272 ctcgagttcgactcgtttaaaattaacgaacaactcgattcagctcgtt 320  Q
    |||||||||| |||||||||| || |||||||||||| |||| ||||||    
T  33124200 ctcgagttcggctcgtttaaagttcacgaacaactcggttcaactcgtt 33124248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 37106150 - 37106186
Alignment:
Q  164 gctgaaaatgagtcgagtcgaatcgaacttgtctgag 200  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  37106150 gctggaaatgagtcgagtcgaatcgaacctgtctgag 37106186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 24575309 - 24575380
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||||||||||||||| |||||| ||||||||||| |||  |||||||||||||| ||||||||||||||||    
T  24575309 aaatgagtcgagtcgagtcgaacctgtctgagctcgatttgaatcgataagaattggttcggctcgaaactc 24575380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 5205247 - 5205170
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| |||||||||||||||| |||||| ||||||||||| |||| | || ||||||||| ||||||||||||||||    
T  5205247 ggctggaaatgagtcgagtcgagtcgaacctgtctgagctcgattcgactccataagaattggttcggctcgaaactc 5205170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 38061756 - 38061686
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctc 233  Q
    ||||| |||||||||||||||| |||||| ||||||||||| |||| | |||||||||||| |||||||||    
T  38061756 ggctggaaatgagtcgagtcgagtcgaacctgtctgagctcgattcgactcgataagaattggttcggctc 38061686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 15257978 - 15257906
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||||||||||||||||||||||||     ||||||||||||| || | |||||||||||| ||||||||||||||||    
T  15257978 ggctgaaaatgagtcgagtcgaatc-----tgtctgagctcaactcgactcgataagaattggttcggctcgaaactc 15257906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 28005738 - 28005815
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| |||||||||||||||| |||||| | ||||||||| | || | |||||||||||| ||||||||||||||||    
T  28005738 ggctggaaatgagtcgagtcgagtcgaacctctctgagctcgactcgactcgataagaattggttcggctcgaaactc 28005815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 29678241 - 29678164
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| ||||||||||||||||||||||| ||||||||||  | || | |||||||||| | ||||||||||||||||    
T  29678241 ggctggaaatgagtcgagtcgaatcgaacctgtctgagcttgactcgactcgataagaaatggttcggctcgaaactc 29678164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 32179336 - 32179413
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| ||||||||||||||||| |||||||| ||||||||   || | |||||||||||| ||||||||||||||||    
T  32179336 ggctggaaatgagtcgagtcgaaccgaacttgcctgagctcggctcgattcgataagaattggttcggctcgaaactc 32179413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 36418522 - 36418600
Alignment:
Q  162 aggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||||| ||||||||||||||||||||||  || ||||||||   || | |||||||||||| ||||||||||||||||    
T  36418522 aggctggaaatgagtcgagtcgaatcgaatctgcctgagctcggctcgactcgataagaattggttcggctcgaaactc 36418600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 162 - 256
Target Start/End: Original strand, 44595831 - 44595920
Alignment:
Q  162 aggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcgatac 256  Q
    |||||| ||||||||||||||||| ||||| |||||||||     || | |||||||||||| |||||| ||||||||| |||||| ||||||||    
T  44595831 aggctggaaatgagtcgagtcgaaccgaacctgtctgagc-----tcgactcgataagaattggttcggttcgaaactcgacttgagttcgatac 44595920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 42936498 - 42936558
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaatt 223  Q
    ||||| |||||||||||||||||||||||||||||||| |||| || | ||| ||||||||    
T  42936498 ggctggaaatgagtcgagtcgaatcgaacttgtctgagttcaactcgactcgttaagaatt 42936558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 7955658 - 7955729
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||||||||||||||| |||||  ||||||||||| | || | || ||||||||| ||||||||||||||||    
T  7955658 aaatgagtcgagtcgagtcgaatctgtctgagctcgactcgactcaataagaattggttcggctcgaaactc 7955729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 328
Target Start/End: Complemental strand, 13645746 - 13645688
Alignment:
Q  270 ggctcgagttcgactcgtttaaaattaacgaacaactcgattcagctcgttaggatcat 328  Q
    |||||||||||||||| ||||||||| |||| ||||||  |||||||||||||| ||||    
T  13645746 ggctcgagttcgactcatttaaaattcacgagcaactctgttcagctcgttaggttcat 13645688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 48575870 - 48575796
Alignment:
Q  166 tgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||||||||||||| ||||||||||| ||||||||||| | || | ||||||||||||  || | ||||||||||    
T  48575870 tgaaaatgagtcgaatcgaatcgaacatgtctgagctcgactcgactcgataagaatttatttgactcgaaactc 48575796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 30211765 - 30211858
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcgatac 256  Q
    |||||| |||||| ||||| || || ||| | | ||||||| ||||   ||||||| ||||||||||||||||||||||||| || ||||||||    
T  30211765 ggctgataatgagccgagttgagtcaaacctatatgagctcgattcggctcgataaaaattagttcggctcgaaactcaactcgagttcgatac 30211858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 35309011 - 35309088
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| |||||||| |||||||| ||||| |  ||||||||  ||| | |||||||||||| ||||||||||||||||    
T  35309011 ggctggaaatgagttgagtcgaaccgaacctacctgagctcggttcgactcgataagaattggttcggctcgaaactc 35309088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 35634963 - 35635000
Alignment:
Q  166 tgaaaatgagtcgagtcgaatcgaacttgtctgagctc 203  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  35634963 tgaaaatgagtcgagtcgagtcgaacttgtctgagctc 35635000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 45582236 - 45582159
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| |||||||||||||||| |||||  ||| ||||||| | || | |||||||| |||||||| |||||||||||    
T  45582236 ggctggaaatgagtcgagtcgagtcgaatctgtatgagctcgactcgactcgataaggattagttcagctcgaaactc 45582159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 47603546 - 47603469
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| ||||||||||||||||| ||||| || ||||| ||   || | |||||||||||| ||||||||||||||||    
T  47603546 ggctggaaatgagtcgagtcgaaccgaacctgcctgagttcggctcaactcgataagaattggttcggctcgaaactc 47603469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 23915926 - 23915886
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctc 203  Q
    ||||| ||||||||||||| |||||||||||||||||||||    
T  23915926 ggctggaaatgagtcgagtagaatcgaacttgtctgagctc 23915886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 24470651 - 24470579
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcga 235  Q
    ||||| ||||||||||||||||| ||||| || ||||||||   || | |||||||||||| |||||||||||    
T  24470651 ggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcaactcgataagaattggttcggctcga 24470579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 35810113 - 35810173
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaatt 223  Q
    ||||| ||||||||||||||||||||||| | ||||||||||| || | ||| ||||||||    
T  35810113 ggctggaaatgagtcgagtcgaatcgaacctatctgagctcaactcgactcgttaagaatt 35810173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 43090164 - 43090124
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctc 203  Q
    ||||| |||||||||||||||| ||||||||||||||||||    
T  43090164 ggctggaaatgagtcgagtcgagtcgaacttgtctgagctc 43090124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 15014019 - 15014058
Alignment:
Q  164 gctgaaaatgagtcgagtcgaatcgaacttgtctgagctc 203  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  15014019 gctggaaatgagtcgagtcgaatcaaacttgtctgagctc 15014058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 323
Target Start/End: Original strand, 24575412 - 24575463
Alignment:
Q  272 ctcgagttcgactcgtttaaaattaacgaacaactcgattcagctcgttagg 323  Q
    |||||||||| |||||||||| || |||||||||||| ||| ||||||||||    
T  24575412 ctcgagttcggctcgtttaaagttcacgaacaactcggttcggctcgttagg 24575463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 328
Target Start/End: Complemental strand, 43090062 - 43090004
Alignment:
Q  270 ggctcgagttcgactcgtttaaaattaacgaacaactcgattcagctcgttaggatcat 328  Q
    |||||||||||| |||||||||| || |||| ||||||| ||| |||||||||| ||||    
T  43090062 ggctcgagttcggctcgtttaaagttcacgagcaactcggttcggctcgttaggttcat 43090004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 23916133 - 23916174
Alignment:
Q  162 aggctgaaaatgagtcgagtcgaatcgaacttgtctgagctc 203  Q
    |||||| ||||||||||||||||||||||| ||||| |||||    
T  23916133 aggctggaaatgagtcgagtcgaatcgaacctgtctaagctc 23916174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 320
Target Start/End: Complemental strand, 38061619 - 38061570
Alignment:
Q  271 gctcgagttcgactcgtttaaaattaacgaacaactcgattcagctcgtt 320  Q
    ||||||||||| ||||||||||||| |||||||  ||| |||||||||||    
T  38061619 gctcgagttcggctcgtttaaaattcacgaacagttcggttcagctcgtt 38061570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 46265743 - 46265670
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaa 236  Q
    ||||| ||||||||||||| ||||||||| ||| | ||||||| |  | ||| ||||||||||||||| |||||    
T  46265743 ggctggaaatgagtcgagttgaatcgaacctgtttaagctcaacttgactcgttaagaattagttcggttcgaa 46265670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 50445501 - 50445562
Alignment:
Q  179 agtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||||||||||||| |||||||||| |||| | ||| ||||||||  ||| |||||||||||    
T  50445501 agtcgaatcgaactcgtctgagctcgattcgactcgttaagaattgattcagctcgaaactc 50445562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 14579168 - 14579128
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctc 203  Q
    ||||| ||||||||||||||||||||||| ||| |||||||    
T  14579168 ggctggaaatgagtcgagtcgaatcgaacctgtatgagctc 14579128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 19507941 - 19507981
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctc 203  Q
    ||||| |||||||||||||||| |||||||| |||||||||    
T  19507941 ggctggaaatgagtcgagtcgagtcgaacttatctgagctc 19507981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 36118233 - 36118273
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctc 203  Q
    ||||||||||||||||||||||  ||||||| |||||||||    
T  36118233 ggctgaaaatgagtcgagtcgatccgaacttatctgagctc 36118273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 42916905 - 42916861
Alignment:
Q  161 taggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaa 205  Q
    ||||||| ||||||||||||||||||||||| ||| | |||||||    
T  42916905 taggctggaaatgagtcgagtcgaatcgaacctgtttaagctcaa 42916861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 45654498 - 45654430
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaa 237  Q
    |||||||||||||||| |||||| || |||||||| | || | |||||||||||| |||| ||| ||||    
T  45654498 aaatgagtcgagtcgagtcgaacctgcctgagctcgactcgactcgataagaattggttcagcttgaaa 45654430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 9413401 - 9413311
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcga 253  Q
    ||||| |||||||||||||||||  |||||||||||||||| | || | |||||||||| | |||||||||||||||| |||||| |||||    
T  9413401 ggctggaaatgagtcgagtcgaactgaacttgtctgagctcgactcgactcgataagaaatggttcggctcgaaactcgacttgagttcga 9413311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 32740282 - 32740363
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaact 244  Q
    ||||||||||||||||| |||| ||||| || |||||| || |||| | || |||||||||||||| |||||||| ||||||    
T  32740282 ggctgaaaatgagtcgaatcgagtcgaatttatctgagttcgattcgactcaataagaattagttcagctcgaaattcaact 32740363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 328
Target Start/End: Original strand, 43966900 - 43967050
Alignment:
Q  178 gagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcgatacaaatcannnnnnnggctcgag 277  Q
    ||||||| |||||||||||||| |||   || | |||||||||||| |||||||||||||||| ||| || ||| | || |||         ||||||||    
T  43966900 gagtcgagtcgaacttgtctgaactcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcaaaacgaatttttttttgggctcgag 43966999  T
Q  278 ttcgactcgtttaaaattaacgaacaactcgattcagctcgttaggatcat 328  Q
    |||| |||||||||| || |||| ||||||| ||| |||||||||| ||||    
T  43967000 ttcggctcgtttaaagttcacgagcaactcggttcggctcgttaggttcat 43967050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 27189690 - 27189650
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctc 203  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  27189690 ggctggaaatgagtcgagtcgaatcgaacttgtctgagctc 27189650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 34515558 - 34515603
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattc 208  Q
    ||||| ||||||||||||||||||||||| | ||||||||| ||||    
T  34515558 ggctggaaatgagtcgagtcgaatcgaacctatctgagctcgattc 34515603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 15212037 - 15211997
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctc 203  Q
    |||||||||||||||||| ||||||||||||| || |||||    
T  15212037 ggctgaaaatgagtcgagccgaatcgaacttgcctaagctc 15211997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 52705596 - 52705673
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||   || | |||||||||||| ||||||||||||||||    
T  52705596 ggctggaaatgagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataagaattggttcggctcgaaactc 52705673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 22720746 - 22720824
Alignment:
Q  162 aggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||||| |||||| ||||||||||||||||| ||||||||||   || | |||||||||||| ||||||||||||||||    
T  22720746 aggctggaaatgaatcgagtcgaatcgaactagtctgagctcggctcaactcgataagaattggttcggctcgaaactc 22720824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 7505427 - 7505504
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| |||||||||||||||| ||||||||||||||||||   || | ||||||||||||  |||||||||||||||    
T  7505427 ggctggaaatgagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataagaattgattcggctcgaaactc 7505504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 25133936 - 25134011
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaac 238  Q
    ||||| |||||||||||||||| |||||  ||||||||||| | || | |||||||||||| ||||||||||||||    
T  25133936 ggctggaaatgagtcgagtcgagtcgaatctgtctgagctcgactcgactcgataagaattggttcggctcgaaac 25134011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 50605464 - 50605535
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||||||||||||||| ||||| |||||||||||   || | |||||||||||| ||||||||||||||||    
T  50605464 aaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactc 50605535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 12673802 - 12673728
Alignment:
Q  166 tgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||||||||||||||||| |||||| ||||||||||| | || | ||  |||||| ||||||||||||||||||    
T  12673802 tgaaaatgagtcgagtcgagtcgaacctgtctgagctcgactcaactctttaagaaatagttcggctcgaaactc 12673728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 9222913 - 9222840
Alignment:
Q  162 aggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcga 235  Q
    ||||||||||||||||||||| |||||||  ||||||||||| | || | || ||||||||| |||||||||||    
T  9222913 aggctgaaaatgagtcgagtcaaatcgaaactgtctgagctcgactcaactcaataagaattggttcggctcga 9222840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 9469431 - 9469507
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| |||||||||||||||| |||||| |||||||||||   || | |||||||||||| ||||||||||||||||    
T  9469431 ggctggaaatgagtcgagtcga-tcgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactc 9469507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 40797163 - 40797232
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaac 238  Q
    |||||||||||||||| |||||  ||||||||||| | || | |||||||||||| ||||||||||||||    
T  40797163 aaatgagtcgagtcgagtcgaatctgtctgagctcgactcgactcgataagaattggttcggctcgaaac 40797232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 51409235 - 51409174
Alignment:
Q  179 agtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||||| |||||||||||||||||| | || | |||||||||||| ||||||||||||||||    
T  51409235 agtcgagtcgaacttgtctgagctcgactcgactcgataagaatttgttcggctcgaaactc 51409174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 12790283 - 12790211
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcga 235  Q
    ||||||||||||||||||||||| ||||| |||||||||||   || | |||||||||||| | |||||||||    
T  12790283 ggctgaaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgattcgataagaattggctcggctcga 12790211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 253
Target Start/End: Original strand, 49820387 - 49820471
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcga 253  Q
    |||||| |||||||||||||||| || ||||||||   || | |||||||||||| |||||||||||||||| ||| || |||||    
T  49820387 aaatgaatcgagtcgaatcgaacctgcctgagctcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcga 49820471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 253
Target Start/End: Original strand, 43386537 - 43386627
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcga 253  Q
    ||||| |||||||||||||||||  |||| ||||||||||| | || | |||||||||||| | |||||| ||||||| ||| || |||||    
T  43386537 ggctggaaatgagtcgagtcgaactgaacctgtctgagctcgactcgactcgataagaatttgctcggcttgaaactcgactcgagttcga 43386627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 46945297 - 46945235
Alignment:
Q  178 gagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||||| |||||| ||||||||||| | || | |||||||||||| ||||||||||||||||    
T  46945297 gagtcgagtcgaacctgtctgagctcgactcaactcgataagaattggttcggctcgaaactc 46945235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 253
Target Start/End: Original strand, 51994086 - 51994176
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcga 253  Q
    ||||| ||||||||||||||||||||||   |||||||||| | || | ||| |||||||| |||| ||||||||||| ||| || |||||    
T  51994086 ggctggaaatgagtcgagtcgaatcgaatccgtctgagctcgactcgactcgttaagaattggttcagctcgaaactcgactcgagttcga 51994176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 19850135 - 19850212
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| ||||||||||||||||| ||||| |||||||||||   || | |||||||  ||| ||||||||||||||||    
T  19850135 ggctggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataaacattggttcggctcgaaactc 19850212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 28266876 - 28266836
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctc 203  Q
    |||||||||||||||||||||||| |||| |||||||||||    
T  28266876 ggctgaaaatgagtcgagtcgaattgaacatgtctgagctc 28266836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 44792918 - 44792846
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcga 235  Q
    ||||| ||||||||||||||||| ||||| ||| |||||||   || | |||||||||||| |||||||||||    
T  44792918 ggctggaaatgagtcgagtcgaaccgaacctgtatgagctcggctcgactcgataagaattggttcggctcga 44792846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 55892808 - 55892736
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcga 235  Q
    ||||| ||||||||||||||||||||||  | ||||||||| | || | |||||||||||| | |||||||||    
T  55892808 ggctggaaatgagtcgagtcgaatcgaatctatctgagctcgactcgactcgataagaatttgctcggctcga 55892736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 21436316 - 21436387
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||||||||||||||| ||||| |||||||| ||   || | ||||||||||||  |||||||||||||||    
T  21436316 aaatgagtcgagtcgaaccgaacctgtctgagttcggctcgactcgataagaattgattcggctcgaaactc 21436387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 38493735 - 38493664
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||||||| |||||||||||||| ||||||| || | || |  ||||||||||||| |||||| |||||||    
T  38493735 aaatgagtctagtcgaatcgaactcgtctgagttcgactcgacccgataagaattagatcggcttgaaactc 38493664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 48151765 - 48151714
Alignment:
Q  272 ctcgagttcgactcgtttaaaattaacgaacaactcgattcagctcgttagg 323  Q
    ||||||||||||||||||||| || |||||| ||||| ||||||| ||||||    
T  48151765 ctcgagttcgactcgtttaaagttcacgaactactcggttcagcttgttagg 48151714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 323
Target Start/End: Original strand, 48977007 - 48977167
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcgatacaaatca 262  Q
    ||||| ||||||||||||||||| ||||  || |||| |||   || | |||||||||||| ||||||||||||||||  || || ||||| || ||  |    
T  48977007 ggctggaaatgagtcgagtcgaaccgaatctgcctgaactcggctcgattcgataagaattggttcggctcgaaactcggctcgagttcgacacgaacta 48977106  T
Q  263 nnnnnnnggctcgagttcgactcgtttaaaattaacgaacaactcgattcagctcgttagg 323  Q
            ||||||||||| ||||||||||||| |||||||| | | ||| ||||||||||    
T  48977107 ttttttcagctcgagttcggctcgtttaaaattcacgaacaatttggttcggctcgttagg 48977167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 49406447 - 49406368
Alignment:
Q  162 aggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactca 241  Q
    |||||||||||||||||||| || ||||||||  || ||||| | || | ||||||| |||||  |||||||||||||||    
T  49406447 aggctgaaaatgagtcgagttgagtcgaacttagctaagctcgactcgactcgataaaaattaactcggctcgaaactca 49406368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 52705703 - 52705761
Alignment:
Q  270 ggctcgagttcgactcgtttaaaattaacgaacaactcgattcagctcgttaggatcat 328  Q
    |||||||||||| |||||||||| || |||| ||||||| ||| |||||||||| ||||    
T  52705703 ggctcgagttcggctcgtttaaagtttacgagcaactcggttcggctcgttaggttcat 52705761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 5765325 - 5765256
Alignment:
Q  186 tcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcgata 255  Q
    |||||||||||||||||| | || | ||  |||||| |||||||||||||||||| ||| || |||||||    
T  5765325 tcgaacttgtctgagctcgactcaactctttaagaaatagttcggctcgaaactcgactcgaattcgata 5765256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 5767569 - 5767500
Alignment:
Q  186 tcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcgata 255  Q
    |||||||||||||||||| | || | ||  |||||| |||||||||||||||||| ||| || |||||||    
T  5767569 tcgaacttgtctgagctcgactcaactctttaagaaatagttcggctcgaaactcgactcgaattcgata 5767500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 52812970 - 52813047
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||| |||||||||||||||||| ||||| |||||||| ||   || | |||||||||||| | |||||| |||||||    
T  52812970 ggctaaaaatgagtcgagtcgaaccgaacctgtctgagttcggctcgactcgataagaatttgctcggcttgaaactc 52813047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 328
Target Start/End: Complemental strand, 2647737 - 2647572
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcgatacaaatca 262  Q
    ||||| |||||||||||||||| ||||| |||||||| |||   || | |||||||||||| |||||||||||||||| ||| || ||| | || || |     
T  2647737 ggctggaaatgagtcgagtcgagtcgaatttgtctgaactcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcaaaaccaacct 2647638  T
Q  263 nnnnnnnggctcgagttcgactcgtttaaaattaacgaacaactcgattcagctcgttaggatcat 328  Q
           |||||||||||| |||||||||| || |||| ||||||| ||| |||||||||| ||||    
T  2647637 ttttttgggctcgagttcggctcgtttaaagttcacgagcaactcggttcggctcgttaggttcat 2647572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 169 - 253
Target Start/End: Original strand, 20986073 - 20986157
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcga 253  Q
    ||||||||||||||||| ||||| |||||||||||   || | |||||||||||| ||||||||||||||||  ||||| |||||    
T  20986073 aaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggcttgagttcga 20986157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 26435769 - 26435847
Alignment:
Q  162 aggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||||||||||||||||||||||| ||||  |||||||||||   || | |||||||||||| |||||| |||||||||    
T  26435769 aggctgaaaatgagtcgagtcgaaccgaatctgtctgagctcggctcgattcgataagaattggttcggttcgaaactc 26435847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 36538080 - 36538157
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| |||||||||||||||||  |||| |||||||||||   || | |||||||||||| ||||||||||||||||    
T  36538080 ggctggaaatgagtcgagtcgaactgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactc 36538157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 34116885 - 34116829
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattag 225  Q
    ||||||||||||||||||||||| ||||||||||||| || | ||| ||||||||||    
T  34116885 aaatgagtcgagtcgaatcgaacctgtctgagctcaactcaactcgttaagaattag 34116829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 33830899 - 33830965
Alignment:
Q  169 aaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcga 235  Q
    ||||||||||||||||| ||||| |||||||||||   || | |||||||||||| |||||||||||    
T  33830899 aaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcga 33830965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 40675188 - 40675261
Alignment:
Q  178 gagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcgatac 256  Q
    ||||||| |||||||||||||||||| ||     |||||||||||| |||||||||||||||| ||| || ||||||||    
T  40675188 gagtcgagtcgaacttgtctgagctcgat-----tcgataagaattggttcggctcgaaactcgactcgagttcgatac 40675261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 11027290 - 11027327
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgag 200  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  11027290 ggctggaaatgagtcgagtcgaatcgaacttgtctgag 11027327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 27633145 - 27633222
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| ||||||||||||||||| ||||| || ||||||||   || | | |||||||||| ||||||||||||||||    
T  27633145 ggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgacttgataagaattggttcggctcgaaactc 27633222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 29478046 - 29478139
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactcaacttgacttcgatac 256  Q
    ||||| ||||||| |||||| |  |||||| ||||||||||| ||| | || |||||| || ||||||||| |||||| |||||| ||||||||    
T  29478046 ggctggaaatgagacgagtcaagccgaactcgtctgagctcagttcgactcaataagatttggttcggctcaaaactcgacttgatttcgatac 29478139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 18053397 - 18053433
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctga 199  Q
    ||||| |||||||||||||||||||||||||||||||    
T  18053397 ggctggaaatgagtcgagtcgaatcgaacttgtctga 18053433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 12139394 - 12139446
Alignment:
Q  188 gaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||| |||||||||||  ||| | |||||||||||| ||||||||||||||||    
T  12139394 gaacctgtctgagctcggttcgactcgataagaattggttcggctcgaaactc 12139446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 33830989 - 33831041
Alignment:
Q  271 gctcgagttcgactcgtttaaaattaacgaacaactcgattcagctcgttagg 323  Q
    ||||||||||| |||||||||| || |||||||| ||| ||| ||||||||||    
T  33830989 gctcgagttcggctcgtttaaagttcacgaacaattcggttcggctcgttagg 33831041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 6530 - 6453
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    |||||||||||||||||||||||| |||| || |||||||| | || | |||||||||||| |||||| | |||||||    
T  6530 ggctgaaaatgagtcgagtcgaattgaacctgcctgagctcgactcgactcgataagaattggttcgggttgaaactc 6453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 33566 - 33493
Alignment:
Q  162 aggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcga 235  Q
    ||||||||||||||||||||| |||||||  ||||||||||| | || | || ||||||||| |||||||||||    
T  33566 aggctgaaaatgagtcgagtcaaatcgaaactgtctgagctcgactcaactcaataagaattggttcggctcga 33493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 16495 - 16572
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| ||||||||||||||||||||||| ||||||||||| | || | || | || |||  ||||||||||||||||    
T  16495 ggctggaaatgagtcgagtcgaatcgaacctgtctgagctcgactcaactcaacaaaaatatgttcggctcgaaactc 16572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 26496 - 26570
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaa 237  Q
    ||||| |||| |||||||| ||||||||| ||| ||||||| | || | |||||||||||| |||| ||||||||    
T  26496 ggctggaaatcagtcgagttgaatcgaacctgtttgagctcgactcgactcgataagaattggttcagctcgaaa 26570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 18713 - 18790
Alignment:
Q  163 ggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaattctaatcgataagaattagttcggctcgaaactc 240  Q
    ||||| ||||||||||||||||| ||||  ||| |||||||   || | |||||||||||| ||||||||| ||||||    
T  18713 ggctggaaatgagtcgagtcgaaccgaatctgtttgagctcggctcgactcgataagaattggttcggctcaaaactc 18790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 8099 - 8055
Alignment:
Q  161 taggctgaaaatgagtcgagtcgaatcgaacttgtctgagctcaa 205  Q
    ||||||| ||||||||||||||||||||||| ||| | |||||||    
T  8099 taggctggaaatgagtcgagtcgaatcgaacctgtttaagctcaa 8055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University