View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7682_low_5 (Length: 482)
Name: NF7682_low_5
Description: NF7682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7682_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 381
Target Start/End: Original strand, 14396058 - 14396411
Alignment:
| Q |
13 |
aacctgtgtgaccatatagaagcaacacaacatgatttggtcaatatgacgattgaagaagaggtgtata--cgtcctcccttgtcttctgaggtaattg |
110 |
Q |
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| T |
14396058 |
aacctgtgcgaccatatagaagcaacacaacatgatttggtcaatatgacgattgaagaagaggtgtatatacgtcctcccttgtcttctgaggtaattg |
14396157 |
T |
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| Q |
111 |
tagcctttcgaccatgccgtgtattctgaccgctcccaacatactgatctgagaaacacaagaagtgcaaacaatatggaatccttaaagtgacttaggg |
210 |
Q |
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| T |
14396158 |
tagcctttccaccatgccgtgtatt----------------tactgatctcagaaacacaagaagtgcaaacaatatggaatccttaaagtgacttaggg |
14396241 |
T |
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| Q |
211 |
aagcaacaaaatggaaagtgatataagaatccaatttgaaaggaaacttgaattcttaacataaaatccaaacacatccaatagttgttgaacatgatta |
310 |
Q |
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| T |
14396242 |
aagcaacaaaatggaaagtgatataagaatccaatttgaaaggaaacttgaattcttaacataaaatccaaacacatccaatagttgttgaacatgatta |
14396341 |
T |
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| Q |
311 |
agatggagcttcagactaacagatagatgtcttgccacaatgnnnnnnntggaatttggagagtaaatcag |
381 |
Q |
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| T |
14396342 |
agatggagcttcagactaacagatagatgtcttgccacaatg-aaaaaatggaatttggagagtaaatcag |
14396411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 15099574 - 15099621
Alignment:
| Q |
28 |
atagaagcaacacaacatgatttggtcaatatgacgattgaagaagag |
75 |
Q |
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| T |
15099574 |
atagaagcaacacaaaatgatttggtcaatatgacggttgaagaagag |
15099621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 15099658 - 15099730
Alignment:
| Q |
78 |
gtatacgtcctcccttgtcttctgaggtaattgtagcctttcgaccatgccgtgtattctgaccgctcccaac |
150 |
Q |
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| T |
15099658 |
gtatacattctcccttatctgctgagataattgtagcctttcaaccattccgcttattctgactgctcccaac |
15099730 |
T |
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