View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7682_low_6 (Length: 478)

Name: NF7682_low_6
Description: NF7682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7682_low_6
NF7682_low_6
[»] scaffold0066 (1 HSPs)
scaffold0066 (16-477)||(11468-11929)
[»] chr5 (24 HSPs)
chr5 (92-477)||(24213214-24213601)
chr5 (92-217)||(40786729-40786860)
chr5 (113-318)||(24228229-24228435)
chr5 (338-474)||(28367128-28367263)
chr5 (338-457)||(35264686-35264805)
chr5 (326-474)||(30957729-30957879)
chr5 (338-409)||(16675506-16675577)
chr5 (338-409)||(21171333-21171404)
chr5 (338-415)||(34648077-34648154)
chr5 (340-477)||(18080100-18080239)
chr5 (338-409)||(23053525-23053596)
chr5 (341-459)||(17945640-17945758)
chr5 (341-474)||(12026447-12026580)
chr5 (338-399)||(25365540-25365601)
chr5 (341-415)||(19699279-19699353)
chr5 (343-392)||(19780180-19780228)
chr5 (297-407)||(17604617-17604731)
chr5 (343-410)||(19479669-19479735)
chr5 (427-474)||(19780250-19780297)
chr5 (297-407)||(21575048-21575161)
chr5 (92-158)||(32928932-32928998)
chr5 (364-399)||(25365839-25365874)
chr5 (199-251)||(31109037-31109090)
chr5 (297-340)||(16633405-16633446)
[»] chr1 (29 HSPs)
chr1 (190-477)||(29547614-29547897)
chr1 (92-477)||(11441588-11441976)
chr1 (190-351)||(29530085-29530242)
chr1 (94-340)||(11443959-11444204)
chr1 (340-477)||(145538-145675)
chr1 (326-474)||(27179102-27179252)
chr1 (326-474)||(33493069-33493219)
chr1 (324-477)||(17721591-17721747)
chr1 (326-474)||(15716501-15716651)
chr1 (338-409)||(31093093-31093164)
chr1 (343-467)||(40274587-40274709)
chr1 (190-325)||(18640529-18640658)
chr1 (199-339)||(28201683-28201817)
chr1 (340-477)||(22576022-22576158)
chr1 (338-406)||(11660122-11660190)
chr1 (338-474)||(37356879-37357014)
chr1 (338-409)||(18535125-18535196)
chr1 (338-399)||(28519227-28519288)
chr1 (338-392)||(38991058-38991112)
chr1 (341-477)||(27417600-27417731)
chr1 (341-415)||(16168698-16168772)
chr1 (341-407)||(26028633-26028699)
chr1 (428-473)||(15552742-15552787)
chr1 (92-186)||(36686808-36686902)
chr1 (340-393)||(27317559-27317612)
chr1 (90-153)||(145299-145362)
chr1 (196-231)||(27317706-27317741)
chr1 (92-186)||(27417327-27417425)
chr1 (232-292)||(18643272-18643332)
[»] chr2 (29 HSPs)
chr2 (190-477)||(25231857-25232140)
chr2 (198-477)||(19912137-19912414)
chr2 (191-351)||(25225678-25225834)
chr2 (341-474)||(19089340-19089472)
chr2 (326-474)||(636159-636309)
chr2 (326-474)||(22430225-22430375)
chr2 (326-474)||(22435819-22435969)
chr2 (338-408)||(5836224-5836294)
chr2 (326-474)||(7910095-7910245)
chr2 (326-474)||(14898660-14898810)
chr2 (326-474)||(43776869-43777018)
chr2 (341-456)||(17319665-17319780)
chr2 (338-409)||(19437683-19437754)
chr2 (326-409)||(1525583-1525669)
chr2 (122-186)||(7384758-7384822)
chr2 (341-477)||(11311922-11312058)
chr2 (92-175)||(7394664-7394747)
chr2 (338-409)||(24053434-24053505)
chr2 (338-409)||(25445205-25445275)
chr2 (341-477)||(7385002-7385140)
chr2 (299-408)||(34111092-34111205)
chr2 (201-263)||(21289645-21289708)
chr2 (428-477)||(21289782-21289831)
chr2 (346-407)||(43287547-43287608)
chr2 (341-407)||(16443478-16443545)
chr2 (196-231)||(18557563-18557598)
chr2 (201-254)||(21294943-21294997)
chr2 (326-380)||(18136363-18136419)
chr2 (341-393)||(26538914-26538966)
[»] chr6 (6 HSPs)
chr6 (190-415)||(19441169-19441390)
chr6 (326-459)||(14855828-14855964)
chr6 (341-467)||(17270338-17270464)
chr6 (338-458)||(23427375-23427495)
chr6 (340-477)||(25397790-25397924)
chr6 (326-465)||(6932926-6933067)
[»] chr3 (31 HSPs)
chr3 (95-350)||(13639591-13639856)
chr3 (201-477)||(44122040-44122314)
chr3 (190-415)||(20458791-20459015)
chr3 (326-474)||(9724755-9724906)
chr3 (326-474)||(2168783-2168933)
chr3 (326-474)||(13990709-13990859)
chr3 (326-474)||(23344253-23344403)
chr3 (326-474)||(40800770-40800920)
chr3 (310-415)||(3170265-3170370)
chr3 (98-187)||(38419952-38420041)
chr3 (344-477)||(15636444-15636576)
chr3 (335-477)||(12990802-12990945)
chr3 (340-467)||(17033006-17033132)
chr3 (326-474)||(3110641-3110790)
chr3 (338-474)||(13980803-13980938)
chr3 (338-409)||(49486870-49486941)
chr3 (338-409)||(21883366-21883437)
chr3 (338-408)||(29225230-29225300)
chr3 (341-457)||(7870271-7870387)
chr3 (338-474)||(15752645-15752780)
chr3 (338-393)||(2978381-2978436)
chr3 (341-473)||(27547084-27547217)
chr3 (338-415)||(21477427-21477505)
chr3 (219-323)||(21587192-21587291)
chr3 (201-254)||(44126770-44126824)
chr3 (299-409)||(39875664-39875778)
chr3 (190-252)||(20463156-20463219)
chr3 (340-396)||(10937247-10937303)
chr3 (237-340)||(7642305-7642399)
chr3 (428-474)||(10941910-10941956)
chr3 (360-408)||(20454561-20454609)
[»] chr7 (26 HSPs)
chr7 (326-474)||(25498932-25499081)
chr7 (338-470)||(558019-558150)
chr7 (311-415)||(23818837-23818941)
chr7 (326-474)||(32148354-32148504)
chr7 (338-409)||(8248052-8248123)
chr7 (326-474)||(42208770-42208920)
chr7 (326-474)||(16648300-16648450)
chr7 (326-474)||(17622661-17622811)
chr7 (338-409)||(340439-340510)
chr7 (326-474)||(42162387-42162537)
chr7 (327-399)||(29185478-29185550)
chr7 (300-415)||(7578456-7578574)
chr7 (340-477)||(34326169-34326307)
chr7 (342-415)||(20362586-20362659)
chr7 (338-458)||(25830534-25830653)
chr7 (340-399)||(20125218-20125277)
chr7 (427-477)||(9506473-9506523)
chr7 (326-407)||(26456979-26457063)
chr7 (91-340)||(35338892-35339141)
chr7 (297-407)||(14719460-14719574)
chr7 (427-474)||(22477229-22477276)
chr7 (91-153)||(42939964-42940026)
chr7 (232-324)||(42129521-42129607)
chr7 (428-473)||(20125145-20125190)
chr7 (195-232)||(37479581-37479618)
chr7 (340-372)||(5998303-5998335)
[»] chr4 (33 HSPs)
chr4 (201-477)||(12746583-12746857)
chr4 (340-477)||(22748759-22748895)
chr4 (338-474)||(6162126-6162260)
chr4 (343-474)||(26997032-26997162)
chr4 (326-474)||(20192724-20192874)
chr4 (338-474)||(30673845-30673984)
chr4 (338-457)||(1874138-1874257)
chr4 (299-477)||(20275741-20275923)
chr4 (338-458)||(910992-911112)
chr4 (338-458)||(12435492-12435612)
chr4 (338-458)||(42411000-42411120)
chr4 (338-409)||(12659337-12659408)
chr4 (338-409)||(16325864-16325935)
chr4 (338-409)||(23200468-23200539)
chr4 (338-399)||(29333589-29333650)
chr4 (341-459)||(13999888-14000007)
chr4 (340-409)||(53529634-53529703)
chr4 (428-477)||(2924150-2924199)
chr4 (343-408)||(54678738-54678802)
chr4 (338-406)||(4393899-4393967)
chr4 (78-170)||(8563624-8563716)
chr4 (340-399)||(6407886-6407945)
chr4 (340-410)||(2924057-2924123)
chr4 (338-389)||(12429029-12429080)
chr4 (90-187)||(28874281-28874372)
chr4 (428-474)||(53981972-53982018)
chr4 (326-383)||(53982062-53982122)
chr4 (92-153)||(12753605-12753666)
chr4 (346-392)||(13753523-13753569)
chr4 (338-408)||(42119882-42119952)
chr4 (338-383)||(25687704-25687749)
chr4 (92-152)||(17350009-17350069)
chr4 (326-393)||(19581993-19582063)
[»] chr8 (14 HSPs)
chr8 (340-477)||(23429406-23429544)
chr8 (122-292)||(29185492-29185669)
chr8 (341-477)||(10738841-10738978)
chr8 (326-410)||(12756294-12756381)
chr8 (341-474)||(17909623-17909756)
chr8 (338-458)||(21247569-21247689)
chr8 (338-458)||(27679770-27679890)
chr8 (326-473)||(41048737-41048886)
chr8 (341-474)||(8509659-8509790)
chr8 (338-399)||(37209664-37209725)
chr8 (338-399)||(30714361-30714422)
chr8 (338-399)||(30722138-30722199)
chr8 (92-153)||(22274913-22274974)
chr8 (344-407)||(16845853-16845916)
[»] scaffold0004 (1 HSPs)
scaffold0004 (326-474)||(345803-345953)
[»] scaffold0124 (1 HSPs)
scaffold0124 (326-459)||(39335-39469)
[»] scaffold0014 (1 HSPs)
scaffold0014 (338-409)||(111817-111888)
[»] scaffold0102 (1 HSPs)
scaffold0102 (338-407)||(13969-14038)
[»] scaffold0062 (2 HSPs)
scaffold0062 (204-408)||(19754-19963)
scaffold0062 (204-408)||(29922-30131)


Alignment Details
Target: scaffold0066 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 477
Target Start/End: Complemental strand, 11929 - 11468
Alignment:
Q  16 gtttgcacaagtggttggacaaattactatatatagttgtgtgtgtagtaggatatttgatttaaaaaatatatattgttatgaaattgatcttgagcat 115  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  11929 gtttccacaagtggctggacaaattactatgtatagttgtgtgtgtagtaggatatttgatttaaaaaatatatattgttatgaaattgatccttagcat 11830  T
Q  116 tgtaagatattataaagtatgtaagaatagagagaaagaaacaaagagagaatataagagtgtattgtattattgtgtgttctttacattacaatatagg 215  Q
    || ||||||||||||||||| |||||| | ||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11829 tgcaagatattataaagtatataagaacaaagagaaataaataaagagagaacataagagtgtattgtattattgtgtgttctttacattacaatatagg 11730  T
Q  216 tcatatttataggacaaaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacatttactaatgggggttagggttataggaaggtggaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| ||||||||||||||||| |||||||||    
T  11729 tcatatttataggacaaaatgagcaagtgaatgatcaaacgaattaagcaacactaaccatgcatttattaaagggggttagggttatagaaaggtggaa 11630  T
Q  316 gattaaggacatggacatccactaatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatgg 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11629 gattaaggacatggacatccactaatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaatccgatgg 11530  T
Q  416 nnnnnnnnttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctcatt 477  Q
            || |||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  11529 aaaaaaaattctagtgaaggaaaaagagtacaatatccttttgtatcataatctgcctcatt 11468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 180; Significance: 5e-97; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 92 - 477
Target Start/End: Original strand, 24213214 - 24213601
Alignment:
Q  92 tgttatgaaattgatcttgagcattgtaagatattataaagtatgtaagaatagagagaaagaaacaaa-gagagaatataagagtgtattgtattatt- 189  Q
    |||||||||||||||| | ||||||||||||||||||||||||| ||| | |||||||||||||| ||| || |||| ||||||||||||||||||| |     
T  24213214 tgttatgaaattgatccttagcattgtaagatattataaagtatataacattagagagaaagaaaaaaaagaaagaacataagagtgtattgtattactt 24213313  T
Q  190 -----gtgtgttctttacattacaatataggtcatatttataggaca-aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacattta 283  Q
         || ||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||  |  | ||||||||||||||    
T  24213314 cacaagtatgtactttacattacaatataggtcctatttataggacacaaatgagcaagtgaatgatcaaaccaattaaagaccaataaccatacattta 24213413  T
Q  284 ctaatgggggttagggttataggaaggtggaagattaaggacatggacatccactaatattcataacactccctcttggatgtccatcgaggatatgcct 383  Q
    ||||||| |||||      || |||||||||||||||||| ||| ||||||||||||||||| |||||||||| |||||||||| |||||||||||||||    
T  24213414 ctaatggaggtta------taagaaggtggaagattaaggccatcgacatccactaatattcttaacactcccccttggatgtctatcgaggatatgcct 24213507  T
Q  384 cattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctcatt 477  Q
    |||||||||| |||||||||||| ||||||||        || |||||||||||||||||||||| |||||||||| ||||||| | |||||||    
T  24213508 cattaaaaccttactagagaaaatcccgatgggaaaaaaattctagtgaaggaaaaagagtacaaaatccttttgtgtcataatctacctcatt 24213601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 92 - 217
Target Start/End: Complemental strand, 40786860 - 40786729
Alignment:
Q  92 tgttatgaaattgatcttgagcattgtaagatattataaagtatgtaagaatagagagaaagaaacaaagagagaatataagagtgtattgtattatt-- 189  Q
    |||||||||||||||  | ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |      
T  40786860 tgttatgaaattgattcttagcattgcaagatattataaagtatataagaatagagagaaagaaacaaagagagaacataagagtgtattgtattacttc 40786761  T
Q  190 ----gtgtgttctttacattacaatataggtc 217  Q
        ||||||||||||||||||||||||||||    
T  40786760 acaagtgtgttctttacattacaatataggtc 40786729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 113 - 318
Target Start/End: Original strand, 24228229 - 24228435
Alignment:
Q  113 cattgtaagatattataaagtatgtaagaatagagagaaagaaacaaagagagaatataagagtgtattgtattatt------gtgtgttctttacatta 206  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||  |||| | |||||||||||| |      |||||| ||||||||||    
T  24228229 cattgcaagatattataaagtatataagaatagagagaaagaaacaaagagagagcataataatgtattgtattacttcacaagtgtgtactttacatta 24228328  T
Q  207 caatataggtcatatttataggaca-aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacatttactaatgggggttagggttatag 305  Q
    |||||||| || ||||||||||| | || ||||||||||||||||||||| ||||||  |  | ||||||||||| || |||||      ||||||||||    
T  24228329 caatatagatcctatttataggatacaattgagcaagtgaatgatcaaaccaattaaagaccaataaccatacatatattaatg------agggttatag 24228422  T
Q  306 gaaggtggaagat 318  Q
    |||||||||||||    
T  24228423 gaaggtggaagat 24228435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 338 - 474
Target Start/End: Original strand, 28367128 - 28367263
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaa 437  Q
    ||||||||||||||||||| ||||||||||||||  |||||||||||||||||||| ||||||||||||||||  |||        ||  ||||||||||    
T  28367128 taatattcataacactcccccttggatgtccatctcggatatgcctcattaaaaccttactagagaaaaacccagtgg-gaaaaaattccagtgaaggaa 28367226  T
Q  438 aaagagtacaacatccttttgtatcataatttgcctc 474  Q
    |||||||||||||||||||||| | ||||| ||||||    
T  28367227 aaagagtacaacatccttttgtgttataatctgcctc 28367263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 338 - 457
Target Start/End: Original strand, 35264686 - 35264805
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaa 437  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||  ||||        || |||||||||||    
T  35264686 taatatttataacactcccccttggatgtccattgaggatatgcctcattaaaaccttactagagaaaaacctaatggaagaaaaattctagtgaaggaa 35264785  T
Q  438 aaagagtacaacatcctttt 457  Q
    ||||||||||| ||||||||    
T  35264786 aaagagtacaatatcctttt 35264805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 326 - 474
Target Start/End: Original strand, 30957729 - 30957879
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||||  |||||||||||||||| ||| ||| ||||||||||||  |||           
T  30957729 atggacatccacttgtaatattcataacactcccccttggatgtccatctcggatatgcctcattaataccttacgagagaaaaacccagtgg-gaaaaa 30957827  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  30957828 attccagtgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 30957879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 338 - 409
Target Start/End: Complemental strand, 16675577 - 16675506
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacc 409  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  16675577 taatatttataacactcccccttggatgtccattgaggatatgcctcattaaaaccttactagagaaaaacc 16675506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 21171333 - 21171404
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacc 409  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  21171333 taatatttataacactcccccttggatgtccattgaggatatgcctcattaaaaccttactagagaaaaacc 21171404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 338 - 415
Target Start/End: Original strand, 34648077 - 34648154
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatgg 415  Q
    ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| | |||||||||||||| ||||    
T  34648077 taatattcataactctcccccttggatgtccatcaaggatatgcctcattaaaacctttctagagaaaaacccaatgg 34648154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 340 - 477
Target Start/End: Original strand, 18080100 - 18080239
Alignment:
Q  340 atattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatgg--nnnnnnnnttatagtgaaggaa 437  Q
    |||||||||||| || | |||||||||||||| ||||||||||||||||||||| |||||||| ||||||| | ||          ||  | ||||||||    
T  18080100 atattcataacattctcccttggatgtccatcaaggatatgcctcattaaaaccttactagagtaaaacccaacgggaaaaaaaaattccaatgaaggaa 18080199  T
Q  438 aaagagtacaacatccttttgtatcataatttgcctcatt 477  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  18080200 aaagagtacaacatccttttgtgtcataatctgcctcatt 18080239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 23053525 - 23053596
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacc 409  Q
    ||||||| ||||||||||| ||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  23053525 taatatttataacactcccccttggatgtccattgaagatatgcctcattaaaaccttactagagaaaaacc 23053596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 341 - 459
Target Start/End: Complemental strand, 17945758 - 17945640
Alignment:
Q  341 tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaaa 440  Q
    |||||||||||||||  |||||||||||||  ||||| ||||||||||||||| |||||||||||||| | ||||         | ||||||||||||||    
T  17945758 tattcataacactcctccttggatgtccatgaaggatgtgcctcattaaaaccttactagagaaaaactcaatggaaaaaaaaatctagtgaaggaaaaa 17945659  T
Q  441 gagtacaacatccttttgt 459  Q
    |||||||||| ||||||||    
T  17945658 gagtacaacaaccttttgt 17945640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 474
Target Start/End: Original strand, 12026447 - 12026580
Alignment:
Q  341 tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaaa 440  Q
    |||||||||||||| |  |||||| | |||| ||||||||| ||||||||||| ||||||||||||||| |||||        ||| |||||| ||||||    
T  12026447 tattcataacactctccattggatattcatcaaggatatgcttcattaaaaccttactagagaaaaaccggatggaaaaaaaattacagtgaaagaaaaa 12026546  T
Q  441 gagtacaacatccttttgtatcataatttgcctc 474  Q
     ||||||||||| |||||| ||||||| ||||||    
T  12026547 aagtacaacatcattttgtgtcataatctgcctc 12026580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 399
Target Start/End: Original strand, 25365540 - 25365601
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatacta 399  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  25365540 taatatttataacactcccccttggatgtccatcgaggatatgcctcattaaaaccttacta 25365601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 341 - 415
Target Start/End: Complemental strand, 19699353 - 19699279
Alignment:
Q  341 tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatgg 415  Q
    ||||||||||| |||| |||| ||||||||  ||||| ||||||||||||||| |||||||||||||||| ||||    
T  19699353 tattcataacagtcccccttgaatgtccatgaaggatgtgcctcattaaaaccttactagagaaaaacccaatgg 19699279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 19780180 - 19780228
Alignment:
Q  343 ttcataacactccctcttggatgtccatcgaggatatgcctcattaaaac 392  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  19780180 ttcataacactcccccttggatgtccatcg-ggatatgcctcattaaaac 19780228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 407
Target Start/End: Complemental strand, 17604731 - 17604617
Alignment:
Q  297 gggttataggaaggtggaagattaaggacatggacatccactaa-------tattcataacactccctcttggatgtccatcgaggatatgcctcattaa 389  Q
    ||||||||||||||||||||| |||||  |||||||||||||||       ||||||||||||||||  ||| ||||||| | | |||||||||||||||    
T  17604731 gggttataggaaggtggaagactaagg--atggacatccactaaagtcatttattcataacactcccctttgcatgtccaac-atgatatgcctcattaa 17604635  T
Q  390 aaccatactagagaaaaa 407  Q
    |||  ||||||| |||||    
T  17604634 aactttactagaaaaaaa 17604617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 410
Target Start/End: Original strand, 19479669 - 19479735
Alignment:
Q  343 ttcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaaccc 410  Q
    ||||||||||| |  |||||||||||||| ||||||||||||| ||||||| ||||||| ||||||||    
T  19479669 ttcataacacttctccttggatgtccatc-aggatatgcctcactaaaaccttactagaaaaaaaccc 19479735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 427 - 474
Target Start/End: Original strand, 19780250 - 19780297
Alignment:
Q  427 tagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
    |||||||||||||||| |||||||||||||||| ||||||| ||||||    
T  19780250 tagtgaaggaaaaagattacaacatccttttgtgtcataatctgcctc 19780297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 407
Target Start/End: Original strand, 21575048 - 21575161
Alignment:
Q  297 gggttataggaaggtggaagattaaggacatggacatccactaa------tattcataacactccctcttggatgtccatcgaggatatgcctcattaaa 390  Q
    ||||||||||||||||||||| |||||  |||||||||||||||      |||| |||||||||||  ||||||||||||| | ||||||| || |||||    
T  21575048 gggttataggaaggtggaagactaagg--atggacatccactaagttatttatttataacactccccattggatgtccatc-acgatatgcttcgttaaa 21575144  T
Q  391 accatactagagaaaaa 407  Q
    ||| |||| || |||||    
T  21575145 accttactggaaaaaaa 21575161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 32928998 - 32928932
Alignment:
Q  92 tgttatgaaattgatcttgagcattgtaagatattataaagtatgtaagaatagagagaaagaaaca 158  Q
    |||| ||||||||||| | | ||||| ||||||| |||||| || ||||||||||||||||||||||    
T  32928998 tgttttgaaattgatcattaacattgcaagatatcataaagcatataagaatagagagaaagaaaca 32928932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 399
Target Start/End: Original strand, 25365839 - 25365874
Alignment:
Q  364 tgtccatcgaggatatgcctcattaaaaccatacta 399  Q
    |||||||||||||||||||||||||||||| |||||    
T  25365839 tgtccatcgaggatatgcctcattaaaaccttacta 25365874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 31109037 - 31109090
Alignment:
Q  199 ttacattacaatataggtcatatttataggaca-aaatgagcaagtgaatgatc 251  Q
    ||||||| |||||||| || |||||||| |||| ||||||||||||||||||||    
T  31109037 ttacattgcaatatagatcctatttatatgacacaaatgagcaagtgaatgatc 31109090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 340
Target Start/End: Original strand, 16633405 - 16633446
Alignment:
Q  297 gggttataggaaggtggaagattaaggacatggacatccactaa 340  Q
    ||||||||||||||||||||| |||||  |||||||||||||||    
T  16633405 gggttataggaaggtggaagactaagg--atggacatccactaa 16633446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 190 - 477
Target Start/End: Complemental strand, 29547897 - 29547614
Alignment:
Q  190 gtgtgttctttacattacaatataggtcatatttataggaca-aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacatttactaat 288  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||| |  ||||||||| |||||||||||    
T  29547897 gtgtgttctttacattacaatataggtcctatttataggacataaatgagcaagtgaatgatcaaacaaattaaggaccactaaccatgcatttactaat 29547798  T
Q  289 gggggttagggttataggaaggtggaagatt-aaggacatggacatccactaatattcataacactccctcttggatgtccatcgaggatatgcctcatt 387  Q
    |||| |||      ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29547797 ggggatta------taggaaggtggaagattgaaggacatggacatcaactaatattcataacactcccccttggatgtccatcgaggatatgcctcatt 29547704  T
Q  388 aaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctcatt 477  Q
    |||||| |||||  ||||||||||||||        || ||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  29547703 aaaaccttactatggaaaaacccgatggaaaaaaatttctagtgaaggaaaaagagtacaacatccttttgtgtcataatctgcctcatt 29547614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 92 - 477
Target Start/End: Original strand, 11441588 - 11441976
Alignment:
Q  92 tgttatgaaattgatcttgagcattgtaagatattataaagtatgtaagaatagagagaaagaaacaaagagagaatataagagtgtattgtatta---- 187  Q
    |||| |||||||||| || ||||||| |||||||||| |||||| ||| ||||||||||| |||| ||||||||||  ||||| ||||||||||||        
T  11441588 tgttgtgaaattgatttttagcattgcaagatattatgaagtatataataatagagagaatgaaataaagagagaacgtaagaatgtattgtattacctc 11441687  T
Q  188 --ttgtgtgttctttacattacaatataggtcatatttataggaca-aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacatttac 284  Q
        ||||||  || ||||||||||||||||||||||||||||||| |||| |||||||||| |||||||   |||||| |  | ||| |||||||| ||    
T  11441688 ataagtgtgtaattcacattacaatataggtcatatttataggacacaaataagcaagtgaaagatcaaagtcattaaggaccattaaacatacattcac 11441787  T
Q  285 taatgggggttagggttataggaaggtggaagattaaggacatggacatccactaa------tattcataacactccctcttggatgtccatcgaggata 378  Q
     ||  |       ||||| | ||||||||||||||||||  |||| |||||| |||      |||||||||||||| | |||||||||||||| | ||||    
T  11441788 caaaag------tggttacacgaaggtggaagattaagg--atgggcatccattaagcttattattcataacactctcccttggatgtccatc-aagata 11441878  T
Q  379 tgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctcatt 477  Q
    ||||||||||||||| ||||| |||||||| | ||||        || || |||||||||||||||||||||||||||||| | ||||| |||||||||    
T  11441879 tgcctcattaaaaccttactatagaaaaactcaatgg-aaaaaaattctaatgaaggaaaaagagtacaacatccttttgtgttataatctgcctcatt 11441976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 190 - 351
Target Start/End: Complemental strand, 29530242 - 29530085
Alignment:
Q  190 gtgtgttctttacattacaatataggtcatatttataggaca-aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacatttactaat 288  Q
    |||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||| ||||||| |  ||||||||| |||||||| ||    
T  29530242 gtgtgttctttacattacaatataggtcctatttatatgacacaaatgagcaagtgaatgatcaaaccaattaaggaccactaaccatgcatttactgat 29530143  T
Q  289 gggggttagggttataggaaggtggaagatt-aaggacatggacatccactaatattcataaca 351  Q
    ||      || ||| ||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  29530142 gg------ggtttacaggaaagtggaagattgaaggacatggacatccactaatattcataaca 29530085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 94 - 340
Target Start/End: Original strand, 11443959 - 11444204
Alignment:
Q  94 ttatgaaattgatcttgagcattgtaagatattataaagtatgtaagaatagagagaaagaaacaaagagagaatataagagtgtattgtattatt---- 189  Q
    |||||||||||||  | |||||||||| |||||||||||||| ||| ||||||||||| |||||||||  |||| |||||||| |||||||||| |        
T  11443959 ttatgaaattgattcttagcattgtaatatattataaagtatataataatagagagaatgaaacaaaggaagaacataagagtatattgtattacttcac 11444058  T
Q  190 --gtgtgttctttacattacaatataggtcatatttataggaca-aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacatttacta 286  Q
      ||||||  || |||||| |||||| ||| ||||||||||||| |||||||||||||||||||||||   |||||| |  | ||| |||||||| ||||    
T  11444059 aagtgtgtaattcacattataatataagtcctatttataggacacaaatgagcaagtgaatgatcaaagtcattaagaaccattaagcatacattcacta 11444158  T
Q  287 atgggggttagggttataggaaggtggaagattaaggacatggacatccactaa 340  Q
    |      | | ||||||||||||||||||||||||||  |||||||||||||||    
T  11444159 a------taatggttataggaaggtggaagattaagg--atggacatccactaa 11444204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 340 - 477
Target Start/End: Original strand, 145538 - 145675
Alignment:
Q  340 atattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaa 439  Q
    ||||||||||||||||| |||||||||||||  ||||||||||| ||| ||||| ||| ||||||||| || ||||        || |||||||||||||    
T  145538 atattcataacactcccccttggatgtccataaaggatatgccttattgaaaccttaccagagaaaaatccaatgggaaaaaaattctagtgaaggaaaa 145637  T
Q  440 agagtacaacatccttttgtatcataatttgcctcatt 477  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  145638 agagtacaacatccttttgtgtcataatctgcctcatt 145675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 326 - 474
Target Start/End: Original strand, 27179102 - 27179252
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||||  |||||||||||||||||||| ||||||||||||||||  |||           
T  27179102 atggacatccacttgtaatattcataacactcccccttggatgtccatctcggatatgcctcattaaaaccttactagagaaaaacccagtgg-gaaaaa 27179200  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  27179201 attccagtgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 27179252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 326 - 474
Target Start/End: Original strand, 33493069 - 33493219
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||||  |||||||||||||||||||| ||||||||||||||||  |||           
T  33493069 atggacatccacttgtaatattcataacactcccccttggatgtccatcttggatatgcctcattaaaaccttactagagaaaaacccagtgg-aaaaaa 33493167  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  33493168 attccagtgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 33493219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 324 - 477
Target Start/End: Complemental strand, 17721747 - 17721591
Alignment:
Q  324 acatggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnn 420  Q
    |||||||||||||||   |||||||||||||||||| |||| ||||||||||| |||| |||||||||||||| ||||| ||||| | || | ||         
T  17721747 acatggacatccacttataatattcataacactcccccttgaatgtccatcgatgatacgcctcattaaaaccttactatagaaataaccaaaggaaaat 17721648  T
Q  421 nnnttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctcatt 477  Q
       || ||||||||||||||||||||||||||||||||| ||||||| ||| |||||    
T  17721647 aaattctagtgaaggaaaaagagtacaacatccttttgtgtcataatctgcttcatt 17721591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 326 - 474
Target Start/End: Complemental strand, 15716651 - 15716501
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   |||||||||||||||||| ||||||||| ||||  |||||||||||||||||||| |||||||||||||| |  |||           
T  15716651 atggacatccacttgtaatattcataacactcccccttggatgttcatctcggatatgcctcattaaaaccttactagagaaaaactcagtgg-gaaaaa 15716553  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  15716552 attccagtgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 15716501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 31093093 - 31093164
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacc 409  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  31093093 taatatttataacactcccccttggatgtccattgaggatatgcctcattaaaaccttactagagaaaaacc 31093164  T

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Target: chr1; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 343 - 467
Target Start/End: Original strand, 40274587 - 40274709
Alignment:
Q  343 ttcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaaaga 442  Q
    |||||||||||||| |||||||||||||| ||||||||| ||||||||||| || ||||||||||| | ||||        || ||||||||||||||||    
T  40274587 ttcataacactcccccttggatgtccatc-aggatatgcttcattaaaaccttattagagaaaaactcaatgg-aaaaaaattctagtgaaggaaaaaga 40274684  T
Q  443 gtacaacatccttttgtatcataat 467  Q
    ||||||||||||||||| |||||||    
T  40274685 gtacaacatccttttgtgtcataat 40274709  T

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Target: chr1; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 18640529 - 18640658
Alignment:
Q  190 gtgtgttctttacattacaatataggtcatatttataggaca-aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacatttactaat 288  Q
    |||||||||||||||||  ||||| | | ||||||||||||| |||||||||||||||||||||||  ||||||| |  |||||||||||||| ||||||    
T  18640529 gtgtgttctttacattattatatatgacctatttataggacacaaatgagcaagtgaatgatcaaagcaattaaggaccactaaccatacattcactaat 18640628  T
Q  289 gggggttagggttataggaaggtggaagattaaggac 325  Q
    |        ||||||||||||||||||||||||||||    
T  18640629 g-------aggttataggaaggtggaagattaaggac 18640658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 199 - 339
Target Start/End: Original strand, 28201683 - 28201817
Alignment:
Q  199 ttacattacaatataggtcatatttataggaca-aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacatttactaatgggggttag 297  Q
    |||||||| |||||  ||||||||||||||||| |||||| ||||||||| ||||||  ||||||  | ||||||||||||||| ||||||||     ||    
T  28201683 ttacattaaaatatgagtcatatttataggacataaatgaacaagtgaattatcaaagcaattaaagactactaaccatacattcactaatgg-----ag 28201777  T
Q  298 ggttataggaaggtggaagattaaggacatggacatccacta 339  Q
    ||||||||||||||||||||| ||||  ||||||||||||||    
T  28201778 ggttataggaaggtggaagataaagg--atggacatccacta 28201817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 340 - 477
Target Start/End: Original strand, 22576022 - 22576158
Alignment:
Q  340 atattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaa 439  Q
    |||||||||| ||| || ||||||| |||||| ||||||||||||||||||| | |||||||||||||||| || |        || |||||||||||||    
T  22576022 atattcataatacttccccttggatttccatcaaggatatgcctcattaaaatcttactagagaaaaacccaat-gagaaaaaattctagtgaaggaaaa 22576120  T
Q  440 agagtacaacatccttttgtatcataatttgcctcatt 477  Q
    |||||||||| ||||||||| ||||||| || ||||||    
T  22576121 agagtacaacgtccttttgtgtcataatctgtctcatt 22576158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 338 - 406
Target Start/End: Complemental strand, 11660190 - 11660122
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaa 406  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  11660190 taatatttataacactcccccttggatgtccattgaggatatgcctcattaaaaccttactagagaaaa 11660122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 338 - 474
Target Start/End: Original strand, 37356879 - 37357014
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaa 437  Q
    ||||||| ||||||||||| ||||||||||||| || ||||||||||||||||||| |||||||||||||||  || |        || |||||||||||    
T  37356879 taatatttataacactcccccttggatgtccattgaagatatgcctcattaaaaccttactagagaaaaacctaataggagaaaaattttagtgaaggaa 37356978  T
Q  438 aaagagtacaacatccttttgtatcataatttgcctc 474  Q
    ||||||||||| || ||| ||||| ||||| ||||||    
T  37356979 aaagagtacaatat-cttgtgtatgataatctgcctc 37357014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 18535125 - 18535196
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacc 409  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| |||| ||||||||||    
T  18535125 taatatttataacactcccccttggatgtccattgaggatatgcctcattaaaaccttactggagaaaaacc 18535196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 399
Target Start/End: Complemental strand, 28519288 - 28519227
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatacta 399  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  28519288 taatatttataacactcccccttggatgtccatcgaggatatgcctcattaaaaccttacta 28519227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 392
Target Start/End: Complemental strand, 38991112 - 38991058
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaac 392  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  38991112 taatatttataacactcccccttggatgtccatcgaggatatgcctcattaaaac 38991058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 341 - 477
Target Start/End: Original strand, 27417600 - 27417731
Alignment:
Q  341 tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaaa 440  Q
    |||||| |||||||||||||||||||||||| |||||||| |||||||||||| |||||   ||||| || ||||          || ||||||||||||    
T  27417600 tattcacaacactccctcttggatgtccatc-aggatatgtctcattaaaaccttactaagaaaaaatccaatggaaaaaa----attgtgaaggaaaaa 27417694  T
Q  441 gagtacaacatccttttgtatcataatttgcctcatt 477  Q
    |||| ||||||| |||||| |||||||||||||||||    
T  27417695 gagttcaacatcattttgtgtcataatttgcctcatt 27417731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 341 - 415
Target Start/End: Complemental strand, 16168772 - 16168698
Alignment:
Q  341 tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatgg 415  Q
    |||||||||||||||  ||||||||| |||| ||||||||||||||||||||  ||||| | |||||||||||||    
T  16168772 tattcataacactcctccttggatgttcatcaaggatatgcctcattaaaactttactaaaaaaaaacccgatgg 16168698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 341 - 407
Target Start/End: Complemental strand, 26028699 - 26028633
Alignment:
Q  341 tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaa 407  Q
    ||||||||| |||||| |||||||||||||  ||||| ||||||||||||||| || ||||||||||    
T  26028699 tattcataatactcccccttggatgtccatgaaggatgtgcctcattaaaaccttattagagaaaaa 26028633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 428 - 473
Target Start/End: Complemental strand, 15552787 - 15552742
Alignment:
Q  428 agtgaaggaaaaagagtacaacatccttttgtatcataatttgcct 473  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||    
T  15552787 agtgaaggaaaaagagtacaacatccttttgtgtcataatatgcct 15552742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 36686902 - 36686808
Alignment:
Q  92 tgttatgaaattgatcttgagcattgtaagatattataaagtatgtaagaatagagagaaagaaacaaagagagaatataagagtgtattgtatt 186  Q
    |||||||||||||||  | |  |||| ||||||||||||||||| ||| ||||||||||||| || ||| ||||||||  ||||| || ||||||    
T  36686902 tgttatgaaattgattcttaatattgcaagatattataaagtatataaaaatagagagaaaggaataaaaagagaataagagagtatagtgtatt 36686808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 393
Target Start/End: Complemental strand, 27317612 - 27317559
Alignment:
Q  340 atattcataacactccctcttggatgtccatcgaggatatgcctcattaaaacc 393  Q
    |||||||||||||||||  ||| |||| ||||||| ||||||||||||||||||    
T  27317612 atattcataacactccccgttgaatgtacatcgagaatatgcctcattaaaacc 27317559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 145299 - 145362
Alignment:
Q  90 attgttatgaaattgatcttgagcattgtaagatattataaagtatgtaagaatagagagaaag 153  Q
    |||||||||||||| ||| | | |||||||| ||||| |||||||| || ||||||||||||||    
T  145299 attgttatgaaattcatccttaacattgtaatatattttaaagtatatatgaatagagagaaag 145362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 27317741 - 27317706
Alignment:
Q  196 tctttacattacaatataggtcatatttataggaca 231  Q
    |||||||||| |||||||||||||||||||||||||    
T  27317741 tctttacatttcaatataggtcatatttataggaca 27317706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 27417327 - 27417425
Alignment:
Q  92 tgttatgaaattgatcttgagcattgtaagatattat----aaagtatgtaagaatagagagaaagaaacaaagagagaatataagagtgtattgtatt 186  Q
    |||||||||||||||| | ||||||| ||| |||||     ||||||| ||||||||||||||||| || ||||||| || || ||||| || ||||||    
T  27417327 tgttatgaaattgatcattagcattgcaagctattacgtacaaagtatataagaatagagagaaaggaataaagagataagatgagagtatactgtatt 27417425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 18643272 - 18643332
Alignment:
Q  232 aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacatttactaatgggg 292  Q
    |||||||||| ||||||||||||  ||||||| |  |||||||||||| | ||||||||||    
T  18643272 aaatgagcaaatgaatgatcaaagcaattaaggaccactaaccatacagtcactaatgggg 18643332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 6e-75; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 190 - 477
Target Start/End: Complemental strand, 25232140 - 25231857
Alignment:
Q  190 gtgtgttctttacattacaatataggtcatatttataggaca-aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacatttactaat 288  Q
    |||||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||||||||||| ||||||| |  |||||||||||||||||||||    
T  25232140 gtgtgttctttacattacaatatatgtcctatttatgggacacaaatgagcaagtgaatgatcaaaccaattaaggaccactaaccatacatttactaat 25232041  T
Q  289 gggggttagggttataggaaggtggaagatt-aaggacatggacatccactaatattcataacactccctcttggatgtccatcgaggatatgcctcatt 387  Q
    ||| ||||      ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||| |||||| | |||||||||||||    
T  25232040 gggagtta------taggaaggtggaagattgaaggacatggacatccactaatattcataacattcccccttggatatccatcaaagatatgcctcatt 25231947  T
Q  388 aaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctcatt 477  Q
    |||||| ||||||||||||||||||||         || ||||||||||||| ||||||||||||||||||| |||| || | |||||||    
T  25231946 aaaaccttactagagaaaaacccgatgagaaaaaaattctagtgaaggaaaatgagtacaacatccttttgtgtcatgatcttcctcatt 25231857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 198 - 477
Target Start/End: Complemental strand, 19912414 - 19912137
Alignment:
Q  198 tttacattacaatataggtcatatttataggaca-aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacatttactaatgggggtta 296  Q
    ||||||||| |||||||||| ||||||||||||| |||||||||||||| ||||||||  ||||||| | ||||||||||||||| | |||| |          
T  19912414 tttacattataatataggtcctatttataggacacaaatgagcaagtgagtgatcaaagcaattaaggactactaaccatacattcaataatag------ 19912321  T
Q  297 gggttataggaaggtggaagattaaggacatggacatccactaa------tattcataacactccctcttggatgtccatcgaggatatgcctcattaaa 390  Q
    |||||||||||||||||||||||||||   ||||||||||||||      |||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  19912320 gggttataggaaggtggaagattaagg--gtggacatccactaagtctattattcataacactcccccttggatgtccat-taggatatgcctcattaaa 19912224  T
Q  391 accatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctcatt 477  Q
    ||| | ||| |||||||||| ||||        || |||||| |||||||||||||||||||||||||| |||||||  ||||||||    
T  19912223 accttcctatagaaaaacccaatggaaaaaaaattctagtgatggaaaaagagtacaacatccttttgtgtcataatgagcctcatt 19912137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 191 - 351
Target Start/End: Complemental strand, 25225834 - 25225678
Alignment:
Q  191 tgtgttctttacattacaatataggtcatatttataggaca-aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacatttactaatg 289  Q
    ||||||||||||||||||||| | ||| ||||||||||||| |||||| ||| ||||||||||||| ||||||| |  ||||||||||||||||||||||    
T  25225834 tgtgttctttacattacaatacatgtcctatttataggacacaaatgaacaaatgaatgatcaaaccaattaagaatcactaaccatacatttactaatg 25225735  T
Q  290 ggggttagggttataggaaggtggaagatt-aaggacatggacatccactaatattcataaca 351  Q
          || |||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  25225734 ------agagttatatgaaggtggaagattgaaggacatggacatccactaatattcataaca 25225678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 341 - 474
Target Start/End: Complemental strand, 19089472 - 19089340
Alignment:
Q  341 tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaaa 440  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||||||||| |||||||||||||||||||||        || |||||||| |||||    
T  19089472 tattcataacactccctcttggatgtccatgaaagatatgcctcattaaaaccttactagagaaaaacccgatgg-aaaaaaattctagtgaagaaaaaa 19089374  T
Q  441 gagtacaacatccttttgtatcataatttgcctc 474  Q
    ||||||||||||||||||| || |||||||||||    
T  19089373 gagtacaacatccttttgtgtcgtaatttgcctc 19089340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 326 - 474
Target Start/End: Complemental strand, 636309 - 636159
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||||  |||||||||||||||||||| ||||||||||||||||  |||           
T  636309 atggacatccacttgtaatattcataacactcccccttggatgtccatctcggatatgcctcattaaaaccttactagagaaaaacccagtgg-gaaaaa 636211  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  636210 attccagtgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 636159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 326 - 474
Target Start/End: Complemental strand, 22430375 - 22430225
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||||  |||||||||||||||||||| ||||||||||||||||  |||           
T  22430375 atggacatccacttgtaatattcataacactcccccttggatgtccatctcggatatgcctcattaaaaccttactagagaaaaacccagtgg-gaaaaa 22430277  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  22430276 attccagtgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 22430225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 326 - 474
Target Start/End: Complemental strand, 22435969 - 22435819
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||||  |||||||||||||||||||| ||||||||||||||||  |||           
T  22435969 atggacatccacttgtaatattcataacactcccccttggatgtccatctcggatatgcctcattaaaaccttactagagaaaaacccagtgg-gaaaaa 22435871  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  22435870 attccagtgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 22435819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 338 - 408
Target Start/End: Original strand, 5836224 - 5836294
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaac 408  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5836224 taatattcataacactcccccttggatgtccatcgaggatatgcctcattaaaaccttactagagaaaaac 5836294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 326 - 474
Target Start/End: Original strand, 7910095 - 7910245
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||||  ||||||| |||||||||||| ||||||||||||||||  |||           
T  7910095 atggacatccacttgtaatattcataacactcccccttggatgtccatctcggatatgtctcattaaaaccttactagagaaaaacccagtgg-gaaaaa 7910193  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  7910194 attccagtgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 7910245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 326 - 474
Target Start/End: Complemental strand, 14898810 - 14898660
Alignment:
Q  326 atggacatccac---taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    ||||||||||||   ||||||||||||||||||| ||||||||||||||  | |||||||||||||||||| ||||||||||||||||  |||           
T  14898810 atggacatccacctgtaatattcataacactcccccttggatgtccatctcgaatatgcctcattaaaaccttactagagaaaaacccagtgg-gaaaaa 14898712  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  14898711 attccagtgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 14898660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 326 - 474
Target Start/End: Complemental strand, 43777018 - 43776869
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||||  |||||||||||||||||||| ||||||||||||||||  |||           
T  43777018 atggacatccacttgtaatattcataacactcccccttggatgtccatctcggatatgcctcattaaaaccttactagagaaaaacccagtgg--gaaaa 43776921  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  ||||||||||||||||||||| |||||||||| | ||||| ||||||    
T  43776920 attccagtgaaggaaaaagagtacaatatccttttgtgttataatctgcctc 43776869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 341 - 456
Target Start/End: Original strand, 17319665 - 17319780
Alignment:
Q  341 tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaaa 440  Q
    |||||||||||||||| |||||||||||||| ||||||||||| ||||||||| | |||||||||||| || |||        || ||||||||||||||    
T  17319665 tattcataacactcccccttggatgtccatcaaggatatgcctaattaaaaccttgctagagaaaaactcggtgggaaaaaaattctagtgaaggaaaaa 17319764  T
Q  441 gagtacaacatccttt 456  Q
     |||||| ||||||||    
T  17319765 tagtacatcatccttt 17319780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 19437683 - 19437754
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacc 409  Q
    ||||||| ||||||||||| ||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  19437683 taatatttataacactcccccttggatgtccattgaagatatgcctcattaaaaccttactagagaaaaacc 19437754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 326 - 409
Target Start/End: Complemental strand, 1525669 - 1525583
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacc 409  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||||  |||||||||||||||||| | |||| ||||||||||    
T  1525669 atggacatccacttataatattcataacactcccccttggatgtccatctcggatatgcctcattaaaatcttactggagaaaaacc 1525583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 7384758 - 7384822
Alignment:
Q  122 atattataaagtatgtaagaatagagagaaagaaacaaagagagaatataagagtgtattgtatt 186  Q
    |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  7384758 atattataaattatataagaatagagagaaagaaataaagagagaatataagagtatattgtatt 7384822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 341 - 477
Target Start/End: Complemental strand, 11312058 - 11311922
Alignment:
Q  341 tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaaa 440  Q
    ||||||||||| || ||||||||||||||   ||||| ||||||||||||||| ||||||||||||| || || |        || ||||||||||||||    
T  11312058 tattcataacattctctcttggatgtccacgaaggatgtgcctcattaaaaccttactagagaaaaatccaataggaaaaaaattctagtgaaggaaaaa 11311959  T
Q  441 gagtacaacatccttttgtatcataatttgcctcatt 477  Q
     ||||||||| |||||||| || |||| |||||||||    
T  11311958 aagtacaacaaccttttgtgtcttaatctgcctcatt 11311922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 7394664 - 7394747
Alignment:
Q  92 tgttatgaaattgatcttgagcattgtaagatattataaagtatgtaagaatagagagaaagaaacaaagagagaatataagag 175  Q
    |||||||||||| |||   |||||||  |||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||    
T  7394664 tgttatgaaattaatccaaagcattgctagatattataaagtatataaaaatagagagaaagaaacaaagagagaacataagag 7394747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 24053434 - 24053505
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacc 409  Q
    ||||||| ||||||||||| ||| ||||||||| || ||||||||||||||||||| |||||||||||||||    
T  24053434 taatatttataacactcccccttagatgtccattgaagatatgcctcattaaaaccttactagagaaaaacc 24053505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 25445205 - 25445275
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacc 409  Q
    ||||||| ||||||||||| ||| ||||||||| |||||||||||||||||||||| |||||||||||||||    
T  25445205 taatatttataacactccc-cttagatgtccattgaggatatgcctcattaaaaccttactagagaaaaacc 25445275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 341 - 477
Target Start/End: Original strand, 7385002 - 7385140
Alignment:
Q  341 tattcataacactccctcttggatgtccatcgaggatatg--cctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaa 438  Q
    |||||||||||||||| |||||||||||||  ||||| ||  ||||||||||||  ||||||| |||||| | |||         || ||||||||||||    
T  7385002 tattcataacactcccccttggatgtccatgaaggatgtgtgcctcattaaaacattactagaaaaaaactcaatgagaaaaaaattctagtgaaggaaa 7385101  T
Q  439 aagagtacaacatccttttgtatcataatttgcctcatt 477  Q
    |||||||||||| |||||||| || |||| |||||||||    
T  7385102 aagagtacaacaaccttttgtgtcttaatctgcctcatt 7385140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 299 - 408
Target Start/End: Original strand, 34111092 - 34111205
Alignment:
Q  299 gttataggaaggtggaagattaaggacatggacatccactaa-------tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaa 391  Q
    |||||||||||||||| |||||||||  ||||||||||||||       ||||||||||||||||  || |||||||||| |||||||||||||||||||    
T  34111092 gttataggaaggtggatgattaagga--tggacatccactaaaatcatttattcataacactcccctttcgatgtccatc-aggatatgcctcattaaaa 34111188  T
Q  392 ccatactagagaaaaac 408  Q
    |  ||||||| ||||||    
T  34111189 ctttactagaaaaaaac 34111205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 21289645 - 21289708
Alignment:
Q  201 acattacaatataggtcatatttataggaca-aaatgagcaagtgaatgatcaaacgaattaag 263  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||  |||||||    
T  21289645 acattacaatataagtcctatttataggacacaaatgagcaagtgaatgatcaaagtaattaag 21289708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 428 - 477
Target Start/End: Original strand, 21289782 - 21289831
Alignment:
Q  428 agtgaaggaaaaagagtacaacatccttttgtatcataatttgcctcatt 477  Q
    |||||||||||||||||||||||||||||||| ||||||| | |||||||    
T  21289782 agtgaaggaaaaagagtacaacatccttttgtgtcataatctacctcatt 21289831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 407
Target Start/End: Original strand, 43287547 - 43287608
Alignment:
Q  346 ataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaa 407  Q
    |||||||| || ||||||||| ||| |||||||||||||||||||||| || ||||||||||    
T  43287547 ataacacttccccttggatgttcattgaggatatgcctcattaaaaccttaatagagaaaaa 43287608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 407
Target Start/End: Original strand, 16443478 - 16443545
Alignment:
Q  341 tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaacc-atactagagaaaaa 407  Q
    |||||||||||||||| |||||||||||||  | |||||| ||||||||||||  |||||||||||||    
T  16443478 tattcataacactcccccttggatgtccatgaaagatatgtctcattaaaacctttactagagaaaaa 16443545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 18557563 - 18557598
Alignment:
Q  196 tctttacattacaatataggtcatatttataggaca 231  Q
    ||||||||||||| ||||||||||||||||||||||    
T  18557563 tctttacattacattataggtcatatttataggaca 18557598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 21294943 - 21294997
Alignment:
Q  201 acattacaatataggtcatatttataggaca-aaatgagcaagtgaatgatcaaa 254  Q
    ||||||||| ||| ||| ||||||||||| | |||||||||||||||||||||||    
T  21294943 acattacaacataagtcctatttataggatacaaatgagcaagtgaatgatcaaa 21294997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 380
Target Start/End: Original strand, 18136363 - 18136419
Alignment:
Q  326 atggacatccac--taatattcataacactccctcttggatgtccatcgaggatatg 380  Q
    ||||||||||||  ||||||||||||||||||   ||||||||| ||||||||||||    
T  18136363 atggacatccacaataatattcataacactcctcattggatgtctatcgaggatatg 18136419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 26538914 - 26538966
Alignment:
Q  341 tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaacc 393  Q
    ||||||||||||| ||  ||||||||||||  |||||||| ||||||||||||    
T  26538914 tattcataacacttccctttggatgtccatgaaggatatgtctcattaaaacc 26538966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 190 - 415
Target Start/End: Original strand, 19441169 - 19441390
Alignment:
Q  190 gtgtgttctttacattacaatataggtcatatttataggaca-aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacatttactaat 288  Q
    |||||| | ||| ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||| | ||||| |  |||||||||| |||||| |||    
T  19441169 gtgtgtccgttatattacaatatatgtcctatttataggacacaaatgagcaagtgaatgatcaaaccatttaaggaccactaaccatagatttaccaat 19441268  T
Q  289 gggggttagggttataggaaggtggaagatt-aaggacatggacatccactaatattcataacactccctcttggatgtccatcgaggatatgcctcatt 387  Q
    ||||||||      ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  19441269 gggggtta------taggaaggtggaagattgaaggacatagacatccactaatattcataacactcccccttggatgtccattgatgatatgcctcatt 19441362  T
Q  388 aaaaccatactagagaaaaacccgatgg 415  Q
    |||||| ||||||||||||| |||||||    
T  19441363 aaaaccttactagagaaaaatccgatgg 19441390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 326 - 459
Target Start/End: Complemental strand, 14855964 - 14855828
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||||  |||||||||||||||||||| ||||||||||||||||  |||           
T  14855964 atggacatccacttgtaatattcataacactcccccttggatgtccatctcggatatgcctcattaaaaccttactagagaaaaacccagtgggaaaaaa 14855865  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgt 459  Q
     ||  | ||||||||||||||||||||||||||||||    
T  14855864 atttcaatgaaggaaaaagagtacaacatccttttgt 14855828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 341 - 467
Target Start/End: Original strand, 17270338 - 17270464
Alignment:
Q  341 tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaaa 440  Q
    |||||||||||||||| |||||||||||||  ||||||||||||||||||||| |||||||||||||| ||||||         | || |||||||||||    
T  17270338 tattcataacactcccccttggatgtccatgaaggatatgcctcattaaaaccttactagagaaaaacgcgatgggaaaaaaaatctaatgaaggaaaaa 17270437  T
Q  441 gagtacaacatccttttgtatcataat 467  Q
    ||||| ||||||||||||| |||||||    
T  17270438 gagtaaaacatccttttgtgtcataat 17270464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 338 - 458
Target Start/End: Complemental strand, 23427495 - 23427375
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaa 437  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |  |||||||  |||         | |||||||||||    
T  23427495 taatatttataacactcccccttggatgtccatcgaggatatgcctcattaaaaccttactaaaataaaaccccgtgggaaaaaaaatctagtgaaggaa 23427396  T
Q  438 aaagagtacaacatccttttg 458  Q
    ||||||||||| |||||||||    
T  23427395 aaagagtacaatatccttttg 23427375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 477
Target Start/End: Complemental strand, 25397924 - 25397790
Alignment:
Q  340 atattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaa 439  Q
    ||||||||||||||||| |  | ||||||||| ||||||||||||||||||||| |||||| |||||| || ||||         | |||||||||||||    
T  25397924 atattcataacactccccc--gaatgtccatcaaggatatgcctcattaaaaccttactagtgaaaaatccaatggaaaaaaaa-tctagtgaaggaaaa 25397828  T
Q  440 agagtacaacatccttttgtatcataatttgcctcatt 477  Q
    ||| ||||||||| |||||| ||||||| |||||||||    
T  25397827 agattacaacatcattttgtgtcataatctgcctcatt 25397790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 465
Target Start/End: Complemental strand, 6933067 - 6932926
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   ||||||||||||||  |  ||||||||||| |||| ||||||||||||||||||| ||||||| |||||||| || |           
T  6933067 atggacatccacttataatattcataacacagctccttggatgtccgtcgaagatatgcctcattaaaaccttactagataaaaacccaat-gagaaaaa 6932969  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcata 465  Q
     |||||||||| ||||||||||||| |||| |||||| |||||    
T  6932968 attatagtgaatgaaaaagagtacatcatcattttgtgtcata 6932926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 95 - 350
Target Start/End: Complemental strand, 13639856 - 13639591
Alignment:
Q  95 tatgaaattgatcttgagcattgtaagatattataaagtatgtaagaatagagagaaagaaacaaagagagaatataagagtgtattg---------tat 185  Q
    ||||||||| ||||  || ||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||         |||    
T  13639856 tatgaaattaatctaaagtattataagatattataaaatatataagaatagagagaaagaaccaaagagagaatataagagtgtattgacagtattgtat 13639757  T
Q  186 tatt------gtgtgttctttacattacaatataggtcatatttataggaca-aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatac 278  Q
    | ||      |||||||||||||||||||||||||||| ||| |||| | || |||||||||||||||||||||||| ||||||| |  |||||||||||    
T  13639756 tgtttcacaagtgtgttctttacattacaatataggtcctatgtataaggcacaaatgagcaagtgaatgatcaaaccaattaaggaccactaaccatac 13639657  T
Q  279 atttactaatgggggttagggttataggaaggtggaagattaaggacatggacatccactaatattcataac 350  Q
    ||||||||| |      | ||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  13639656 atttactaacg------aaggttataggaaggtggaagattatggacatagacatccactaatattcataac 13639591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 201 - 477
Target Start/End: Original strand, 44122040 - 44122314
Alignment:
Q  201 acattacaatataggtcatatttataggaca-aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacatttactaatgggggttaggg 299  Q
    ||||||||||| ||||| ||||||||||||| ||||||||| |||||||||||||   |||||| |  | ||| |||||||| ||||||     ||  ||    
T  44122040 acattacaatacaggtcctatttataggacacaaatgagcaggtgaatgatcaaagtcattaaggaccattaagcatacattcactaata----tt--gg 44122133  T
Q  300 ttataggaaggtggaagattaaggacatggacatccactaa------tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaacc 393  Q
    |||||||||||||||||||||||||  ||||||||||||||      |||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  44122134 ttataggaaggtggaagattaagga--tggacatccactaagcttattattcataacactcccccttggatgtccatc-aggatatgcctcattaaaacc 44122230  T
Q  394 atactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctcatt 477  Q
     ||||| ||||||| || ||||         | ||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  44122231 ttactatagaaaaatccaatgggaaaaaaaatctagtgaaggaaaaagagtacaacatccttttgtgtcataatctgcctcatt 44122314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 190 - 415
Target Start/End: Original strand, 20458791 - 20459015
Alignment:
Q  190 gtgtgttctttacattacaatataggtcatatttataggaca-aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacatttactaat 288  Q
    |||||||||||||||||||||||||||  |||||||||| || |||||||||||||||||||||||  | |||||    |||||||| ||||| ||||||    
T  20458791 gtgtgttctttacattacaatataggttctatttataggtcacaaatgagcaagtgaatgatcaaaacatttaaggttcactaaccaaacattcactaat 20458890  T
Q  289 gggggttagggttataggaaggtggaagattaaggacatggacatccactaa--------tattcataacactccctcttggatgtccatcgaggatatg 380  Q
    |       |||||||||||||||||||||||||||  |||||||||||||||        |||||||||||||||| |||||||| ||||| ||||||||    
T  20458891 g-------gggttataggaaggtggaagattaagg--atggacatccactaacttataattattcataacactcccccttggatgcccatc-aggatatg 20458980  T
Q  381 cctcattaaaaccatactagagaaaaacccgatgg 415  Q
     |||||||||||| |||||||||||||||| ||||    
T  20458981 tctcattaaaaccttactagagaaaaacccaatgg 20459015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 326 - 474
Target Start/End: Original strand, 9724755 - 9724906
Alignment:
Q  326 atggacatccacta---atattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    ||||||||||||||   ||||||||||||||||| ||||||||||||||  |||||||||||||||||||| |||||||||||||||| |  |           
T  9724755 atggacatccactagtaatattcataacactcccccttggatgtccatctcggatatgcctcattaaaaccttactagagaaaaaccccagtgggaaaaa 9724854  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     || ||||||||||||||||||||||||||||||||| | ||||| ||||||    
T  9724855 attctagtgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 9724906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 326 - 474
Target Start/End: Original strand, 2168783 - 2168933
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   |||||||||||||||||| |||||||||||||   |||||||||||||||||||| |||||||||||||||| ||||           
T  2168783 atggacatccacttgtaatattcataacactcccccttggatgtccatatcggatatgcctcattaaaaccttactagagaaaaacccaatgg-gaaaaa 2168881  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  2168882 attccagtgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 2168933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 326 - 474
Target Start/End: Complemental strand, 13990859 - 13990709
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||||  |||||||||||||||||||| ||||||||||||||||  |||           
T  13990859 atggacatccacttgtaatattcataacactcccccttggatgtccatctcggatatgcctcattaaaaccttactagagaaaaacccagtgg-gaaaaa 13990761  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  13990760 attccagtgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 13990709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 326 - 474
Target Start/End: Complemental strand, 23344403 - 23344253
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||||  |||||||||||||||||||| ||||||||||||||||  |||           
T  23344403 atggacatccacttgtaatattcataacactcccccttggatgtccatctcggatatgcctcattaaaaccttactagagaaaaacccagtgg-gaaaaa 23344305  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  23344304 attccagtgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 23344253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 326 - 474
Target Start/End: Original strand, 40800770 - 40800920
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||||  |||||||||||||||||||| ||||||||||||||||  |||           
T  40800770 atggacatccacttgtaatattcataacactcccccttggatgtccatctcggatatgcctcattaaaaccttactagagaaaaacccagtgg-gaaaaa 40800868  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  40800869 attccagtgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 40800920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 310 - 415
Target Start/End: Original strand, 3170265 - 3170370
Alignment:
Q  310 gtggaagattaaggacatggacatccactaatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacc 409  Q
    ||||||||  ||||| ||| |||||||||||||| ||||||||| ||  ||||||||||||||||||||| ||||||||||||| ||||||||||||||     
T  3170265 gtggaagaacaaggatatgaacatccactaatatacataacacttccctttggatgtccatcgaggatatacctcattaaaaccttactagagaaaaact 3170364  T
Q  410 cgatgg 415  Q
    ||||||    
T  3170365 cgatgg 3170370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 38420041 - 38419952
Alignment:
Q  98 gaaattgatcttgagcattgtaagatattataaagtatgtaagaatagagagaaagaaacaaagagagaatataagagtgtattgtatta 187  Q
    |||||||||| | | ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||    
T  38420041 gaaattgatccttaacattgcaagatattataaagtatgtaagaatagagagaaagaaacaaatagagaacataagagtgttttgtatta 38419952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 344 - 477
Target Start/End: Original strand, 15636444 - 15636576
Alignment:
Q  344 tcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaaagag 443  Q
    ||||||||||||| ||||||||| | || |||||||| |||||||||||| |||||||||||||||| ||||        || |||||||||||||||||    
T  15636444 tcataacactcccccttggatgttcgtcaaggatatgtctcattaaaaccttactagagaaaaacccaatgg-ggaaaaattctagtgaaggaaaaagag 15636542  T
Q  444 tacaacatccttttgtatcataatttgcctcatt 477  Q
    |||||||| ||||||| ||||||| |||||||||    
T  15636543 tacaacatacttttgtgtcataatctgcctcatt 15636576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 335 - 477
Target Start/End: Complemental strand, 12990945 - 12990802
Alignment:
Q  335 cactaatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatgg-nnnnnnnnttatagtgaa 433  Q
    |||| |||||||||||||| || |||||||||||||| ||||||||| ||||||||||| |||||||||||||| | ||||          | |||||||    
T  12990945 cacttatattcataacacttccccttggatgtccatcaaggatatgcttcattaaaaccttactagagaaaaactcaatggaaaaaaaaaatctagtgaa 12990846  T
Q  434 ggaaaaagagtacaacatccttttgtatcataatttgcctcatt 477  Q
    |||||||||||||||||||||||||| |||||||  ||||||||    
T  12990845 ggaaaaagagtacaacatccttttgtgtcataatccgcctcatt 12990802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 340 - 467
Target Start/End: Complemental strand, 17033132 - 17033006
Alignment:
Q  340 atattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaa 439  Q
    ||||||||||||||||  ||||||||||| || ||||||||||||||||||||| ||||||| ||||||||| |||        || |||||||||||||    
T  17033132 atattcataacactcctccttggatgtccttcaaggatatgcctcattaaaaccttactagaaaaaaacccgctgg-aaaaaaattctagtgaaggaaaa 17033034  T
Q  440 agagtacaacatccttttgtatcataat 467  Q
    |||||||||||||| ||||| |||||||    
T  17033033 agagtacaacatccctttgtgtcataat 17033006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 326 - 474
Target Start/End: Original strand, 3110641 - 3110790
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||||   ||||||||||||||||||| ||||| |||||||||| ||||           
T  3110641 atggacatccacttgtaatattcataacactcccccttggatgtccatctcagatatgcctcattaaaaccttacta-agaaaaacccaatgg-gaaaaa 3110738  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  3110739 attccagtgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 3110790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 338 - 474
Target Start/End: Original strand, 13980803 - 13980938
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaa 437  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||| |||||||||   |||        ||  | ||||||||    
T  13980803 taatattcataacactcttccttggatgtccatcgaggatatgcctcattaaaaccttactaaagaaaaacctagtgg-gaaaaaattccattgaaggaa 13980901  T
Q  438 aaagagtacaacatccttttgtatcataatttgcctc 474  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  13980902 aaagagtacaacatccttttgtattataatctgcctc 13980938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 49486870 - 49486941
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacc 409  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  49486870 taatatttataacactcccccttggatgtccattgaggatatgcctcattaaaaccttactagagaaaaacc 49486941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 409
Target Start/End: Complemental strand, 21883437 - 21883366
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacc 409  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| || ||||||||||||    
T  21883437 taatatttataacactcccccttggatgtccattgaggatatgcctcattaaaaccttattagagaaaaacc 21883366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 338 - 408
Target Start/End: Complemental strand, 29225300 - 29225230
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaac 408  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||| || |||||||||||    
T  29225300 taatattcataatactctctcttggatgtccatcgaagatatgcctcattaaaaccttattagagaaaaac 29225230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 341 - 457
Target Start/End: Original strand, 7870271 - 7870387
Alignment:
Q  341 tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaaa 440  Q
    ||||||||| |||||| |||||||||| ||| |||||| |||||| ||||||| |||||||||||||||| |||         |||||||||| ||||||    
T  7870271 tattcataatactcccccttggatgtctatcaaggatacgcctcactaaaaccttactagagaaaaacccaatgaaaaaaaaattatagtgaaagaaaaa 7870370  T
Q  441 gagtacaacatcctttt 457  Q
    ||||||||||| |||||    
T  7870371 gagtacaacattctttt 7870387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 338 - 474
Target Start/End: Original strand, 15752645 - 15752780
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaa 437  Q
    ||||||| |||||| |||| ||||||||||||| || ||||||||||||||||||| |||||||||||||||  || |        || |||||||||||    
T  15752645 taatatttataacattcccccttggatgtccattgaagatatgcctcattaaaaccttactagagaaaaacctaataggagaaaaattctagtgaaggaa 15752744  T
Q  438 aaagagtacaacatccttttgtatcataatttgcctc 474  Q
    ||||||||||| || ||| ||||| ||||| ||||||    
T  15752745 aaagagtacaatat-cttgtgtatgataatctgcctc 15752780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 393
Target Start/End: Original strand, 2978381 - 2978436
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaacc 393  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2978381 taatatttataacactcccccttggatgtccatcgaggatatgcctcattaaaacc 2978436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 341 - 473
Target Start/End: Complemental strand, 27547217 - 27547084
Alignment:
Q  341 tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagaga-aaaacccgatggnnnnnnnnttatagtgaaggaaaa 439  Q
    |||||||||||||||  |||||||||||||| | || ||| |||||||||||| ||||||||| ||||||||||||         | || | ||||||||    
T  27547217 tattcataacactcctgcttggatgtccatcaaagacatgtctcattaaaaccttactagagaaaaaacccgatggtaaaaaaaatctaataaaggaaaa 27547118  T
Q  440 agagtacaacatccttttgtatcataatttgcct 473  Q
    ||||||||||||| |||||| ||||||| |||||    
T  27547117 agagtacaacatctttttgtgtcataatctgcct 27547084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 415
Target Start/End: Complemental strand, 21477505 - 21477427
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatact-agagaaaaacccgatgg 415  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||| ||| |||| ||| |||||||| ||||    
T  21477505 taatatttataacactcccccttggatgtccattgaggatatgcctcattaacaccttactaagataaaaacccaatgg 21477427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 323
Target Start/End: Original strand, 21587192 - 21587291
Alignment:
Q  219 tatttataggaca-aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacatttactaatgggggttagggttataggaaggtggaaga 317  Q
    ||||||||||||| |||||||||||||||||||||||  | ||||| |  ||||||||||| || ||||||||      |||||||||||||||||||||    
T  21587192 tatttataggacacaaatgagcaagtgaatgatcaaagcagttaaggatcactaaccatactttcactaatgg------gggttataggaaggtggaaga 21587285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 44126770 - 44126824
Alignment:
Q  201 acattacaatataggtcatatttataggaca-aaatgagcaagtgaatgatcaaa 254  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  44126770 acattacaatataggtcctatttataggacacaaatgagcaagtgaatgatcaaa 44126824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 299 - 409
Target Start/End: Complemental strand, 39875778 - 39875664
Alignment:
Q  299 gttataggaaggtggaagattaaggacatggacatccactaa-----tatt-cataacactccctcttggatgtccatcgaggatatgcctcattaaaac 392  Q
    ||||||||||||||||||| ||| || ||||||| |||||||     |||| |||||||||||  |||||||||||||| |||||||| |||||||||||    
T  39875778 gttataggaaggtggaagactaaaga-atggacagccactaagtcattatttcataacactcctccttggatgtccatc-aggatatgtctcattaaaac 39875681  T
Q  393 catactagagaaaaacc 409  Q
    | ||||||| |||||||    
T  39875680 cttactagaaaaaaacc 39875664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 20463156 - 20463219
Alignment:
Q  190 gtgtgttctttacattacaatataggtcatatttataggaca-aaatgagcaagtgaatgatca 252  Q
    |||||||||||||||||||||||||||  |||||||||  || |||||||||||||||||||||    
T  20463156 gtgtgttctttacattacaatataggttctatttatagatcacaaatgagcaagtgaatgatca 20463219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 396
Target Start/End: Complemental strand, 10937303 - 10937247
Alignment:
Q  340 atattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccata 396  Q
    |||||||||||| |  | ||||||||||||||||||||||||||| |||||| ||||    
T  10937303 atattcataacattttcccttggatgtccatcgaggatatgcctcgttaaaatcata 10937247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 340
Target Start/End: Complemental strand, 7642399 - 7642305
Alignment:
Q  237 agcaagtgaatgatcaaacgaattaagcaatactaaccatacatttactaatgggggttagggttataggaaggtggaagattaaggacatggacatcca 336  Q
    ||||||| ||||||||||  ||||||| |  |||||||||| ||| ||||||||||       ||||||||||||||||||||||  | |||||||||||    
T  7642399 agcaagtaaatgatcaaagtaattaaggaccactaaccataaattcactaatgggg-------ttataggaaggtggaagattaa--agatggacatcca 7642309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 428 - 474
Target Start/End: Original strand, 10941910 - 10941956
Alignment:
Q  428 agtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
    |||||||||||||| |||||||||| |||||| ||||||| ||||||    
T  10941910 agtgaaggaaaaagggtacaacatcattttgtgtcataatctgcctc 10941956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 408
Target Start/End: Complemental strand, 20454609 - 20454561
Alignment:
Q  360 tggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaac 408  Q
    |||||||||||| |||||||| || ||||||||  ||||||||||||||    
T  20454609 tggatgtccatcaaggatatggctaattaaaactttactagagaaaaac 20454561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 326 - 474
Target Start/End: Complemental strand, 25499081 - 25498932
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||           
T  25499081 atggacatccacttataatattcataacactcccccttggatgtccatcgaggatatgcctcattaaaaccttactagagaaaaacccaatgg--aaaaa 25498984  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     || ||||||||||||||||||||| ||||||||||| | ||||| ||||||    
T  25498983 attctagtgaaggaaaaagagtacagcatccttttgtgttataatctgcctc 25498932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 338 - 470
Target Start/End: Original strand, 558019 - 558150
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaa 437  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||        ||  ||||||||||    
T  558019 taatattcataacactcccccttggatgtccatcgaggatatgcctcattaaaaccttactagagaaaaacccagtgg-gaaaaaattccagtgaaggaa 558117  T
Q  438 aaagagtacaacatccttttgtatcataatttg 470  Q
    |||||||||||||||||||||| | ||||||||    
T  558118 aaagagtacaacatccttttgtgttataatttg 558150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 311 - 415
Target Start/End: Original strand, 23818837 - 23818941
Alignment:
Q  311 tggaagattaaggacatggacatccactaatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaaccc 410  Q
    |||||||| ||||| |||||||||||||||||||||||||| | |   ||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  23818837 tggaagatcaaggatatggacatccactaatattcataacatttctcattggatgtccatcgaggatatgcctcattaaaacattactagagaaaaaccc 23818936  T
Q  411 gatgg 415  Q
    |||||    
T  23818937 gatgg 23818941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 326 - 474
Target Start/End: Complemental strand, 32148504 - 32148354
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||||  |||||||||||||||||||| ||||||||||||||||  |||           
T  32148504 atggacatccacttgtaatattcataacactcccccttggatgtccatctcggatatgcctcattaaaaccttactagagaaaaacccagtgg-gaaaaa 32148406  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  | |||||||||||||||||||||||||||||| | ||||| ||||||    
T  32148405 attccaatgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 32148354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 338 - 409
Target Start/End: Complemental strand, 8248123 - 8248052
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacc 409  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  8248123 taatatttataacactcccccttggatgtccattgaggatatgcctcattaaaaccttactagagaaaaacc 8248052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 326 - 474
Target Start/End: Complemental strand, 42208920 - 42208770
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   |||||||||||||||||| |||||||||||| |  ||| |||||||||||||||| ||||||||||||| ||  |||           
T  42208920 atggacatccacttgtaatattcataacactcccccttggatgtccacctcggacatgcctcattaaaaccttactagagaaaaatccagtgggaaaaaa 42208821  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  42208820 ttt-cagtgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 42208770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 326 - 474
Target Start/End: Complemental strand, 16648450 - 16648300
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   ||||||||||||| |||| |||||||||||||   ||||||| |||||||||||| ||||||||||||||||  |||           
T  16648450 atggacatccacttgtaatattcataacattcccccttggatgtccatttcggatatgtctcattaaaaccttactagagaaaaacccagtgg-gaaaaa 16648352  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  16648351 attccagtgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 16648300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 326 - 474
Target Start/End: Complemental strand, 17622811 - 17622661
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   ||||||||||||| |||| |||||||||||||   ||||||| |||||||||||| ||||||||||||||||  |||           
T  17622811 atggacatccacttgtaatattcataacattcccccttggatgtccatttcggatatgtctcattaaaaccttactagagaaaaacccagtgg-gaaaaa 17622713  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  17622712 attccagtgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 17622661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 340439 - 340510
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacc 409  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| || ||||||||||||    
T  340439 taatatttataacactcccccttggatgtccattgaggatatgcctcattaaaaccttattagagaaaaacc 340510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 474
Target Start/End: Original strand, 42162387 - 42162537
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   ||||||||||||||| || |||||||||| |||  |||||||||| ||||||||| ||||||| ||||||||  |||           
T  42162387 atggacatccacttgtaatattcataacacttccccttggatgtcaatcttggatatgcct-attaaaaccttactagataaaaacccagtgggaaaaaa 42162485  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  42162486 atttcagtgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 42162537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 327 - 399
Target Start/End: Complemental strand, 29185550 - 29185478
Alignment:
Q  327 tggacatccactaatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatacta 399  Q
    |||||||||| || || | ||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  29185550 tggacatccaatattaataataacactcccccttggatgtccatcgaggatatgcctcattaaaaccttacta 29185478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 415
Target Start/End: Complemental strand, 7578574 - 7578456
Alignment:
Q  300 ttataggaaggtggaagattaaggacatggacatccactaa-------tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaac 392  Q
    |||| ||||||||||||| ||||||  ||||||||||||||       |||||||||||||||| |||||||||||||  ||||||||||| |||||||     
T  7578574 ttatgggaaggtggaagactaagga--tggacatccactaaagtcatttattcataacactcccccttggatgtccat--aggatatgccttattaaaat 7578479  T
Q  393 catactagagaaaaacccgatgg 415  Q
    | |||||||||||||||| ||||    
T  7578478 cttactagagaaaaacccaatgg 7578456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 477
Target Start/End: Complemental strand, 34326307 - 34326169
Alignment:
Q  340 atattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttat-agtgaaggaaa 438  Q
    ||||||||||||||||   |||||| |||||  ||||||||||||||||||||| |||||||| ||||||| | ||           | |||||||||||    
T  34326307 atattcataacactcctcattggatatccattaaggatatgcctcattaaaaccttactagagtaaaacccaacgggaaaaaaaaattcagtgaaggaaa 34326208  T
Q  439 aagagtacaacatccttttgtatcataatttgcctcatt 477  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  34326207 aagagtacaacatccttttgtgtcataatctgcctcatt 34326169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 342 - 415
Target Start/End: Complemental strand, 20362659 - 20362586
Alignment:
Q  342 attcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatgg 415  Q
    |||||||||||||||| |||||||||||||  |||||||||||||||||||| |||||  ||||||||| ||||    
T  20362659 attcataacactcccttttggatgtccatcatggatatgcctcattaaaaccttactaaggaaaaacccaatgg 20362586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 458
Target Start/End: Original strand, 25830534 - 25830653
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaa 437  Q
    ||||||| ||||||||||| |||| |||||||||||||||||||||| |||||||| ||||| |  ||||||| |||         || |||||||||||    
T  25830534 taatatttataacactccc-cttgaatgtccatcgaggatatgcctcgttaaaaccttactaaaataaaacccaatgaaaaaaaaattctagtgaaggaa 25830632  T
Q  438 aaagagtacaacatccttttg 458  Q
    ||||||||||| |||||||||    
T  25830633 aaagagtacaatatccttttg 25830653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 20125277 - 20125218
Alignment:
Q  340 atattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatacta 399  Q
    ||||||||||||||||| |||||||||||||| | |||||||||| |||||||| |||||    
T  20125277 atattcataacactcccccttggatgtccatcaaagatatgcctcgttaaaaccttacta 20125218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 427 - 477
Target Start/End: Complemental strand, 9506523 - 9506473
Alignment:
Q  427 tagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctcatt 477  Q
    ||||||||| ||||||||||||||||||||||||||||||| || ||||||    
T  9506523 tagtgaaggtaaaagagtacaacatccttttgtatcataatatgtctcatt 9506473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 326 - 407
Target Start/End: Original strand, 26456979 - 26457063
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaa 407  Q
    |||||||||||||   ||||||||||||| ||   |||||||||||||||||||||||  ||||||||||| || ||||||||||    
T  26456979 atggacatccacttataatattcataacattcttccttggatgtccatcgaggatatgattcattaaaaccttattagagaaaaa 26457063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 340
Target Start/End: Original strand, 35338892 - 35339141
Alignment:
Q  91 ttgttatgaaattgatcttgagcattgtaagatattataaagtatgtaagaatagagagaaagaaacaaagagagaatataagagtgtattgtattatt- 189  Q
    |||||||||||||||| |  || |||| |||||||| |||||||| |||||||||||  ||||  | ||||||||||||  | ||| ||||||||| ||     
T  35338892 ttgttatgaaattgatttaaagtattgcaagatattgtaaagtatataagaatagagttaaagggataaagagagaataagatagtatattgtattcttt 35338991  T
Q  190 -----gtgtgttctttacattacaatataggtcatatttatagg--acaaaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacattt 282  Q
         |||| |||||||||| ||||| ||| || ||||||||||  |||| ||||||| |||||  ||||||  ||||||| |  | ||||||| ||||     
T  35338992 cacaagtgtattctttacatgacaatgtagatcctatttataggatacaatatgagcatgtgaaatatcaaagtaattaaggaccattaaccatccattc 35339091  T
Q  283 actaatgggggttagggttataggaaggtggaagattaaggacatggacatccactaa 340  Q
    ||| ||||      | ||||||||||||||||||| ||| |  |||||||||||||||    
T  35339092 acttatgg------gagttataggaaggtggaagactaatg--atggacatccactaa 35339141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 407
Target Start/End: Original strand, 14719460 - 14719574
Alignment:
Q  297 gggttataggaaggtggaagattaaggacatggacatccactaa-------tattcataacactccctcttggatgtccatcgaggatatgcctcattaa 389  Q
    ||||||||||||||||||||| |||||||  |||||||||||||       ||||||||||||||||  ||| ||||||| | | |||||||||||||||    
T  14719460 gggttataggaaggtggaagactaaggac--ggacatccactaaagtcatttattcataacactcccctttgcatgtccaac-atgatatgcctcattaa 14719556  T
Q  390 aaccatactagagaaaaa 407  Q
    |||  ||||||| |||||    
T  14719557 aactttactagaaaaaaa 14719574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 427 - 474
Target Start/End: Original strand, 22477229 - 22477276
Alignment:
Q  427 tagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
    ||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  22477229 tagtgaaagaaaaagagtacaacatccttttgtgtcataatctgcctc 22477276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 42940026 - 42939964
Alignment:
Q  91 ttgttatgaaattgatcttgagcattgtaagatattataaagtatgtaagaatagagagaaag 153  Q
    ||||||||||||| |||   ||||||| |||||||| |||||||| |||||||||||||||||    
T  42940026 ttgttatgaaattaatccaaagcattgcaagatattgtaaagtatataagaatagagagaaag 42939964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 42129607 - 42129521
Alignment:
Q  232 aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacatttactaatgggggttagggttataggaaggtggaagattaagga 324  Q
    |||||||||||||||||||||||  ||||||| |  | |||||||| ||| |||||| |      ||||||||||||||||||||||||||||    
T  42129607 aaatgagcaagtgaatgatcaaagaaattaaggatcattaaccatatattcactaatag------gggttataggaaggtggaagattaagga 42129521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 473
Target Start/End: Complemental strand, 20125190 - 20125145
Alignment:
Q  428 agtgaaggaaaaagagtacaacatccttttgtatcataatttgcct 473  Q
    |||||| ||||||||||||||||||||||||| | ||||| |||||    
T  20125190 agtgaaagaaaaagagtacaacatccttttgtgttataatctgcct 20125145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 37479581 - 37479618
Alignment:
Q  195 ttctttacattacaatataggtcatatttataggacaa 232  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  37479581 ttctttacattgcaatataggtcctatttataggacaa 37479618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 372
Target Start/End: Complemental strand, 5998335 - 5998303
Alignment:
Q  340 atattcataacactccctcttggatgtccatcg 372  Q
    ||||||||||||||| |||||||||||||||||    
T  5998335 atattcataacactctctcttggatgtccatcg 5998303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 201 - 477
Target Start/End: Original strand, 12746583 - 12746857
Alignment:
Q  201 acattacaatataggtcatatttataggaca-aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacatttactaatgggggttaggg 299  Q
    |||||| |||||||||  ||||||||||||  |||||||||||||||||||||||   |||||| |  | |||  ||||||| |||||| | |||||       
T  12746583 acattataatataggttctatttataggacgcaaatgagcaagtgaatgatcaaagtcattaaggaccattaagtatacattcactaatagtggtta--- 12746679  T
Q  300 ttataggaaggtggaagattaaggacatggacatccactaa------tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaacc 393  Q
       ||||||||||||||||| ||||  ||||||||||||||      |||||||||||||||| |||| ||||||||| |||||| ||||||||||||||    
T  12746680 ---taggaaggtggaagattgagga--tggacatccactaagcttattattcataacactcccccttgaatgtccatc-aggatacgcctcattaaaacc 12746773  T
Q  394 atactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctcatt 477  Q
     ||||| | |||||||| ||||        |||||||||| |||||||||||||||||| |||||| ||||||| |||||||||    
T  12746774 ttactataaaaaaacccaatggaaaaaaaattatagtgaatgaaaaagagtacaacatcattttgtgtcataatctgcctcatt 12746857  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 340 - 477
Target Start/End: Complemental strand, 22748895 - 22748759
Alignment:
Q  340 atattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaa 439  Q
    |||||||||||||| || |||| ||||||||| || |||||||||||||||||| |||||||||||||| | ||||        || |||||||||||||    
T  22748895 atattcataacacttccccttgaatgtccatcaagaatatgcctcattaaaaccttactagagaaaaactcaatgg-aaaaaaattctagtgaaggaaaa 22748797  T
Q  440 agagtacaacatccttttgtatcataatttgcctcatt 477  Q
    ||||||||||| |||||||| || ||||||||||||||    
T  22748796 agagtacaacaaccttttgtgtcttaatttgcctcatt 22748759  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 474
Target Start/End: Complemental strand, 6162260 - 6162126
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaa 437  Q
    ||||||||||||||||||| ||||||||||||||  |||||||||||||||| ||| ||||||||||||||||  |||        ||  ||||||||||    
T  6162260 taatattcataacactcccccttggatgtccatctcggatatgcctcattaacaccttactagagaaaaacccagtgg--aaaaaattccagtgaaggaa 6162163  T
Q  438 aaagagtacaacatccttttgtatcataatttgcctc 474  Q
    |||||||||||||||||||||| | ||||| ||||||    
T  6162162 aaagagtacaacatccttttgtgttataatctgcctc 6162126  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 343 - 474
Target Start/End: Complemental strand, 26997162 - 26997032
Alignment:
Q  343 ttcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaaaga 442  Q
    |||||||||||||| |||||||||||||| |||||||| ||| |||||||| ||| ||||||||| || ||||        || ||| ||||||||||||    
T  26997162 ttcataacactcccccttggatgtccatc-aggatatgtctcgttaaaaccttacaagagaaaaatccaatggaaaaaaaattctagcgaaggaaaaaga 26997064  T
Q  443 gtacaacatccttttgtatcataatttgcctc 474  Q
    ||||||||||||||||| ||||||||||||||    
T  26997063 gtacaacatccttttgtgtcataatttgcctc 26997032  T

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Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 326 - 474
Target Start/End: Original strand, 20192724 - 20192874
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   |||||||||||||||||| |||||||||||||   |||||||||||||||||||| ||||||||||||||||  |||           
T  20192724 atggacatccacttgtaatattcataacactcccccttggatgtccatatcggatatgcctcattaaaaccttactagagaaaaacccagtgggaaaaaa 20192823  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  ||||||||||||||||||||||||| |||||| | ||||| ||||||    
T  20192824 ttt-cagtgaaggaaaaagagtacaacatcattttgtgttataatctgcctc 20192874  T

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Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 338 - 474
Target Start/End: Original strand, 30673845 - 30673984
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaa 437  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||  || |        || |||||||||||    
T  30673845 taatatttataacactcccccttggatgtccattgaggatatgcctcattaaaaccttactagagaaaaacctaataggagaaaaattctagtgaaggaa 30673944  T
Q  438 aaagagtacaacatcc---ttttgtatcataatttgcctc 474  Q
    ||||||||||| ||||   || ||||| ||||||||||||    
T  30673945 aaagagtacaatatcccttttgtgtatgataatttgcctc 30673984  T

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Target: chr4; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 338 - 457
Target Start/End: Original strand, 1874138 - 1874257
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaa 437  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||||||| |||||||| |||||||||||||||  || |        || |||||||||||    
T  1874138 taatatttataacactcccccttggatgtccattgaggatatgcctcgttaaaaccttactagagaaaaacctaataggagaaaaattctagtgaaggaa 1874237  T
Q  438 aaagagtacaacatcctttt 457  Q
    ||||||||||| ||||||||    
T  1874238 aaagagtacaatatcctttt 1874257  T

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Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 299 - 477
Target Start/End: Complemental strand, 20275923 - 20275741
Alignment:
Q  299 gttataggaaggtggaaga-ttaaggacatggacatccactaa-----tatt-cataacactccctcttggatgtccatcgaggatatgcctcattaaaa 391  Q
    ||||||||||||||||||| |||||||  ||||||||||||||     |||| |||||||||||| |||||||||||||| | |||||| ||| ||||||    
T  20275923 gttataggaaggtggaagacttaagga--tggacatccactaagtcattatttcataacactcccccttggatgtccatc-atgatatgtctcgttaaaa 20275827  T
Q  392 ccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctcatt 477  Q
    || ||||||||||||| || |||         || |||||||| |||||||||||||||||||||||| ||||||| || ||||||    
T  20275826 ccttactagagaaaaatccaatgaaaaaaaaattctagtgaagaaaaaagagtacaacatccttttgtgtcataatctgtctcatt 20275741  T

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Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 338 - 458
Target Start/End: Original strand, 910992 - 911112
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaa 437  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |  |||||||  |||         | |||||||||||    
T  910992 taatatttataacacttcctcttggatgtccatcgaggatatgcctcattaaaaccttactaaaataaaaccccgtgggaaaaaaaatctagtgaaggaa 911091  T
Q  438 aaagagtacaacatccttttg 458  Q
    ||||||||||| |||||||||    
T  911092 aaagagtacaatatccttttg 911112  T

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Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 338 - 458
Target Start/End: Original strand, 12435492 - 12435612
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaa 437  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |  |||||||  |||         | |||||||||||    
T  12435492 taatatttataacactcccccttggatgtccatcgaggatatgcctcattaaaaccttactaaaataaaaccccgtgggaaaaaaaatctagtgaaggaa 12435591  T
Q  438 aaagagtacaacatccttttg 458  Q
    ||||||||||| |||||||||    
T  12435592 aaagagtacaatatccttttg 12435612  T

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Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 338 - 458
Target Start/End: Complemental strand, 42411120 - 42411000
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaa 437  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |  |||||||  |||         | |||||||||||    
T  42411120 taatatttataacactcccccttggatgtccatcgaggatatgcctcattaaaaccttactaaaataaaaccccgtgggaaaaaaaatctagtgaaggaa 42411021  T
Q  438 aaagagtacaacatccttttg 458  Q
    ||||||||||| |||||||||    
T  42411020 aaagagtacaatatccttttg 42411000  T

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Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 12659337 - 12659408
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacc 409  Q
    ||||||| ||||||||||| ||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  12659337 taatatttataacactcccccttggatgtccattgaagatatgcctcattaaaaccttactagagaaaaacc 12659408  T

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Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 16325864 - 16325935
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacc 409  Q
    ||||||| ||||||||||| ||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  16325864 taatatttataacactcccccttggatgtccattgaagatatgcctcattaaaaccttactagagaaaaacc 16325935  T

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Target: chr4; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 409
Target Start/End: Complemental strand, 23200539 - 23200468
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacc 409  Q
    ||||||| ||||||||||| ||| ||||||||| |||||||||||||||||||||| |||||||||||||||    
T  23200539 taatatttataacactcccccttagatgtccattgaggatatgcctcattaaaaccttactagagaaaaacc 23200468  T

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Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 399
Target Start/End: Complemental strand, 29333650 - 29333589
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatacta 399  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  29333650 taatatttataacactcccccttggatgtccatcgaggatatgcctcattaaaaccttacta 29333589  T

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Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 341 - 459
Target Start/End: Complemental strand, 14000007 - 13999888
Alignment:
Q  341 tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaacc-atactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaa 439  Q
    |||||||||||||||| |||||||||| ||  |||||||||||||||||||||  || |||||||||||| | | |        || |||||||||||||    
T  14000007 tattcataacactcccccttggatgtctatgaaggatatgcctcattaaaacctttagtagagaaaaacctggtcgaaaaaaaattctagtgaaggaaaa 13999908  T
Q  440 agagtacaacatccttttgt 459  Q
    ||||||||||||||||||||    
T  13999907 agagtacaacatccttttgt 13999888  T

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Target: chr4; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 340 - 409
Target Start/End: Complemental strand, 53529703 - 53529634
Alignment:
Q  340 atattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacc 409  Q
    |||||||||||||||||  ||| ||||||||| |||||||||||| |||||||| |||||||||||||||    
T  53529703 atattcataacactccccattgaatgtccatcaaggatatgcctcgttaaaaccttactagagaaaaacc 53529634  T

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Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 428 - 477
Target Start/End: Original strand, 2924150 - 2924199
Alignment:
Q  428 agtgaaggaaaaagagtacaacatccttttgtatcataatttgcctcatt 477  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  2924150 agtgaaggaaaaagagtacaacatccttttgtgtcataatctgcctcatt 2924199  T

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Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 54678738 - 54678802
Alignment:
Q  343 ttcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaac 408  Q
    |||||||||||||| |||||||||| || |||||||||||||||||||||| ||||| ||||||||    
T  54678738 ttcataacactcccccttggatgtctat-gaggatatgcctcattaaaaccttactaaagaaaaac 54678802  T

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Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 338 - 406
Target Start/End: Original strand, 4393899 - 4393967
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaa 406  Q
    ||||||| ||||||||| |  ||||||||||||||||||||| ||||| ||||||| ||||||||||||    
T  4393899 taatatttataacactctccattggatgtccatcgaggatatacctcaataaaaccttactagagaaaa 4393967  T

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Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 8563624 - 8563716
Alignment:
Q  78 taaaaaatatatattgttatgaaattgatcttgagcattgtaagatattataaagtatgtaagaatagagagaaagaaacaaagagagaatat 170  Q
    |||| ||||| || |||||||||||||||||  || |||| |||||||| |||| ||| |||||||| |||||||| || |||||||||||||    
T  8563624 taaataatatctagtgttatgaaattgatctaaagtattgcaagatattgtaaaatatataagaatacagagaaaggaataaagagagaatat 8563716  T

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Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 6407945 - 6407886
Alignment:
Q  340 atattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatacta 399  Q
    |||||||||| |||||| ||| |||||||||||||||||| | |||||||||||||||||    
T  6407945 atattcataaaactcccccttagatgtccatcgaggatatacatcattaaaaccatacta 6407886  T

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Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 410
Target Start/End: Original strand, 2924057 - 2924123
Alignment:
Q  340 atattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaaccc 410  Q
    ||||||||||||||||||||||     ||||| ||||||||||||||||||||| |||||||| |||||||    
T  2924057 atattcataacactccctcttga----ccatcaaggatatgcctcattaaaaccttactagagtaaaaccc 2924123  T

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Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 389
Target Start/End: Original strand, 12429029 - 12429080
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaa 389  Q
    ||||||| ||||||||||  ||||||||||||| ||||||||||||||||||    
T  12429029 taatatttataacactcctccttggatgtccattgaggatatgcctcattaa 12429080  T

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Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 28874372 - 28874281
Alignment:
Q  90 attgttatgaaattgatcttgagcattgtaagatattataaagtatgtaagaatagagagaaagaaacaaagagagaatataagagtgtattgtatta 187  Q
    |||||||||||||||||| | | ||||| |||||||||||||||||      |||  ||||||||||||||||||||| |||| | ||| ||||||||    
T  28874372 attgttatgaaattgatccttaacattgcaagatattataaagtat------ataatgagaaagaaacaaagagagaacataaaaatgttttgtatta 28874281  T

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Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 474
Target Start/End: Complemental strand, 53982018 - 53981972
Alignment:
Q  428 agtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
    |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  53982018 agtgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 53981972  T

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Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 53982122 - 53982062
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcct 383  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||||  ||||||||||    
T  53982122 atggacatccacttgtaatattcataacactcccccttggatgtccatcttggatatgcct 53982062  T

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Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 12753605 - 12753666
Alignment:
Q  92 tgttatgaaattgatcttgagcattgtaagatattataaagtatgtaagaatagagagaaag 153  Q
    |||||||||||| |||  ||||||||  ||||||| |||||||| |||||||||||||||||    
T  12753605 tgttatgaaattaatccagagcattgctagatattgtaaagtatataagaatagagagaaag 12753666  T

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Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 392
Target Start/End: Original strand, 13753523 - 13753569
Alignment:
Q  346 ataacactccctcttggatgtccatcgaggatatgcctcattaaaac 392  Q
    |||||||||||  ||||||||||||| ||||||||||||| ||||||    
T  13753523 ataacactcccctttggatgtccatcaaggatatgcctcaataaaac 13753569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 408
Target Start/End: Original strand, 42119882 - 42119952
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaac 408  Q
    ||||||| |||||| || | |||||| |  ||| |||||||||||||||||||| | ||||||||||||||    
T  42119882 taatatttataacattctcccttggaagctcattgaggatatgcctcattaaaatcttactagagaaaaac 42119952  T

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Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 25687704 - 25687749
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcct 383  Q
    ||||||| ||||||||||| ||||||||| ||| ||||||||||||    
T  25687704 taatatttataacactcccccttggatgttcattgaggatatgcct 25687749  T

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Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 17350069 - 17350009
Alignment:
Q  92 tgttatgaaattgatcttgagcattgtaagatattataaagtatgtaagaatagagagaaa 152  Q
    ||||||||||||||||   || |||| |||||||| |||||||| ||||| ||||||||||    
T  17350069 tgttatgaaattgatcaaaagtattgcaagatattgtaaagtatataagagtagagagaaa 17350009  T

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Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 393
Target Start/End: Complemental strand, 19582063 - 19581993
Alignment:
Q  326 atggacatccactaata---ttcataacactccctcttggatgtccatcgaggatatgcctcattaaaacc 393  Q
    ||||||||||||| |||   |||||||||||||  ||| |||||||||| | |||||| ||||||||||||    
T  19582063 atggacatccacttataaaattcataacactcctccttagatgtccatcaaagatatgtctcattaaaacc 19581993  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 340 - 477
Target Start/End: Complemental strand, 23429544 - 23429406
Alignment:
Q  340 atattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgat-ggnnnnnnnnttatagtgaaggaaa 438  Q
    ||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |||||||| ||||||| || ||        ||| |||||||||||    
T  23429544 atattcataacactcccccttggatgtccatcaaggatatccctcattaaaaccttactagagtaaaacccaatgggaaaaaaaattacagtgaaggaaa 23429445  T
Q  439 aagagtacaacatccttttgtatcataatttgcctcatt 477  Q
    ||||||||||||| ||||||| ||||||| |||||||||    
T  23429444 aagagtacaacattcttttgtgtcataatctgcctcatt 23429406  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 122 - 292
Target Start/End: Original strand, 29185492 - 29185669
Alignment:
Q  122 atattataaagtatgtaagaatagagagaaagaaacaaagagagaatataagagtgtattgtattatt------gtgtgttctttacattacaatatagg 215  Q
    ||||| |||||||| |||||||||||| |||| || ||||| |||| || ||||| ||||| |||| |      ||||||| |||||||||||||||| |    
T  29185492 atattgtaaagtatataagaatagagaaaaaggaataaagaaagaacatgagagtatattgcattacttcacaagtgtgttttttacattacaatatatg 29185591  T
Q  216 tcatatttataggaca-aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacatttactaatgggg 292  Q
    || ||||||||||||| |||||||||| || |||||||||||||||||| |  || ||||||| ||||||||||||||    
T  29185592 tcctatttataggacacaaatgagcaaatggatgatcaaacgaattaaggaccacaaaccatatatttactaatgggg 29185669  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 341 - 477
Target Start/End: Complemental strand, 10738978 - 10738841
Alignment:
Q  341 tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnt-tatagtgaaggaaaa 439  Q
    |||||||||||||||| |||| ||||||||  ||||| ||||||||||||||| || ||||||||||||| ||||        | |||||||||||||||    
T  10738978 tattcataacactcccccttgaatgtccatgaaggatgtgcctcattaaaaccttattagagaaaaacccaatggaaaaaaaatatatagtgaaggaaaa 10738879  T
Q  440 agagtacaacatccttttgtatcataatttgcctcatt 477  Q
    ||||||||||| |||||||| |  |||| |||||||||    
T  10738878 agagtacaacaaccttttgtgttttaatctgcctcatt 10738841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 326 - 410
Target Start/End: Original strand, 12756294 - 12756381
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaaccc 410  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||||  ||||||| |||||||||||| ||||||||||||||||    
T  12756294 atggacatccacttgtaatattcataacactcccccttggatgtccatctcggatatgtctcattaaaaccttactagagaaaaaccc 12756381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 341 - 474
Target Start/End: Complemental strand, 17909756 - 17909623
Alignment:
Q  341 tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaaa 440  Q
    |||||||||||||||  |||||||||||||  ||||| ||||||||||||||| |||||||||||||||| |||         || ||||||||||||||    
T  17909756 tattcataacactcctccttggatgtccatgaaggatgtgcctcattaaaaccttactagagaaaaacccaatgaaaaaaaaattctagtgaaggaaaaa 17909657  T
Q  441 gagtacaacatccttttgtatcataatttgcctc 474  Q
    ||| |||||| |||||||| || |||| ||||||    
T  17909656 gagcacaacaaccttttgtgtcttaatctgcctc 17909623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 338 - 458
Target Start/End: Complemental strand, 21247689 - 21247569
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaa 437  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |  |||||||  |||         | |||||||||||    
T  21247689 taatatttataacactcccccttggatgtccatcgaggatatgcctcattaaaaccttactaaaataaaaccccgtgggaaaaaaaatctagtgaaggaa 21247590  T
Q  438 aaagagtacaacatccttttg 458  Q
    ||||||||||| |||||||||    
T  21247589 aaagagtacaatatccttttg 21247569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 338 - 458
Target Start/End: Original strand, 27679770 - 27679890
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaa 437  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |  |||||||  |||         | |||||||||||    
T  27679770 taatatttataacactcccccttggatgtccatcgaggatatgcctcattaaaaccttactaaaataaaaccccgtgggaaaaaaaatctagtgaaggaa 27679869  T
Q  438 aaagagtacaacatccttttg 458  Q
    ||||||||||| |||||||||    
T  27679870 aaagagtacaatatccttttg 27679890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 326 - 473
Target Start/End: Complemental strand, 41048886 - 41048737
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   ||||||||||||||| || |||||||| |||||  |||||||||| ||||||||| ||||||||||||||||  |||           
T  41048886 atggacatccacttgtaatattcataacacttccccttggatgcccatctcggatatgcct-attaaaaccttactagagaaaaacccagtgggaaaaaa 41048788  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcct 473  Q
     ||  |||||||||||||||||||||||||||||||| | ||||| |||||    
T  41048787 attccagtgaaggaaaaagagtacaacatccttttgtgttataatctgcct 41048737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 474
Target Start/End: Complemental strand, 8509790 - 8509659
Alignment:
Q  341 tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnnnttatagtgaaggaaaaa 440  Q
    |||||||| || ||||||||||||||||||  | |||||||||| |||||||  || |||||||||||| ||||         ||||||| |||||||||    
T  8509790 tattcatagcattccctcttggatgtccatgaaagatatgcctcgttaaaactttattagagaaaaacctgatg-aaaaaaagttatagtaaaggaaaaa 8509692  T
Q  441 gagtacaacatccttttgtatcataatttgcctc 474  Q
    ||||||||||||| ||||||||||||||||||||    
T  8509691 gagtacaacatcc-tttgtatcataatttgcctc 8509659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 399
Target Start/End: Complemental strand, 37209725 - 37209664
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatacta 399  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  37209725 taatatttataacactcccccttggatgtccatcgaggatatgcctcattaaaaccttacta 37209664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 338 - 399
Target Start/End: Original strand, 30714361 - 30714422
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatacta 399  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||    
T  30714361 taatatttataacactcccccttggatgtccattgaggatatgcctcattaaaaccttacta 30714422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 338 - 399
Target Start/End: Original strand, 30722138 - 30722199
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatacta 399  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||    
T  30722138 taatatttataacactcccccttggatgtccattgaggatatgcctcattaaaaccttacta 30722199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 22274974 - 22274913
Alignment:
Q  92 tgttatgaaattgatcttgagcattgtaagatattataaagtatgtaagaatagagagaaag 153  Q
    |||||||||||| |||   ||||||| |||||||| |||||||| |||||||||||||||||    
T  22274974 tgttatgaaattaatccaaagcattgcaagatattgtaaagtatataagaatagagagaaag 22274913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 407
Target Start/End: Original strand, 16845853 - 16845916
Alignment:
Q  344 tcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaa 407  Q
    |||||||||||   |||||||||||||| | |||||| |||||||||||| | |||||||||||    
T  16845853 tcataacactcttccttggatgtccatcaaagatatgtctcattaaaacctttctagagaaaaa 16845916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 326 - 474
Target Start/End: Original strand, 345803 - 345953
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||||  |||||||||||||||||||| ||||||||||||||||  |||           
T  345803 atggacatccacttgtaatattcataacactcccccttggatgtccatctcggatatgcctcattaaaaccttactagagaaaaacccagtgg-gaaaaa 345901  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgtatcataatttgcctc 474  Q
     ||  |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  345902 attccagtgaaggaaaaagagtacaacatccttttgtgttataatctgcctc 345953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 326 - 459
Target Start/End: Complemental strand, 39469 - 39335
Alignment:
Q  326 atggacatccact---aatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacccgatggnnnnnnn 422  Q
    |||||||||||||   |||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||  |||           
T  39469 atggacatccacttataatattcataacactcccccttg-atgtccatcgaggatatgcctcattaaaaccttactagagaaaaacccagtgg-gaaaaa 39372  T
Q  423 nttatagtgaaggaaaaagagtacaacatccttttgt 459  Q
     ||  ||||||||||||||||||||||||||||||||    
T  39371 attccagtgaaggaaaaagagtacaacatccttttgt 39335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 338 - 409
Target Start/End: Complemental strand, 111888 - 111817
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaacc 409  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  111888 taatatttataacactcccccttggatgtccattgaggatatgcctcattaaaaccttactagagaaaaacc 111817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 338 - 407
Target Start/End: Complemental strand, 14038 - 13969
Alignment:
Q  338 taatattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccatactagagaaaaa 407  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  14038 taatatttataacactcccccttggatgtccattgaggatatgcctcattaaaaccttactagagaaaaa 13969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 204 - 408
Target Start/End: Complemental strand, 19963 - 19754
Alignment:
Q  204 ttacaatataggtcatatttataggaca-aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacatttactaatgggggttagggtta 302  Q
    |||||||||||||| |||||||| |||| |||||| ||||||||||||||||   |||||| | || |||  ||||||| |||||| | |||||  |  |    
T  19963 ttacaatataggtcttatttatatgacacaaatgaacaagtgaatgatcaaagtcattaaggactattaagtatacattcactaatagtggttataggaa 19864  T
Q  303 ta-ggaaggtggaagattaaggacatggacatccactaa------tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccat 395  Q
     | |||||||| |||||||||||  || |||||||||||      ||||||||||||| || ||||||||||||||  |||||||||||||||||||| |    
T  19863 gatggaaggtgaaagattaagga--tgaacatccactaaacttattattcataacacttccccttggatgtccatct-ggatatgcctcattaaaacctt 19767  T
Q  396 actagagaaaaac 408  Q
    |||| ||||||||    
T  19766 actatagaaaaac 19754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 204 - 408
Target Start/End: Complemental strand, 30131 - 29922
Alignment:
Q  204 ttacaatataggtcatatttataggaca-aaatgagcaagtgaatgatcaaacgaattaagcaatactaaccatacatttactaatgggggttagggtta 302  Q
    |||||||||||||| |||||||| |||| |||||| ||||||||||||||||   |||||| | || |||  ||||||| |||||| | |||||  |  |    
T  30131 ttacaatataggtcttatttatatgacacaaatgaacaagtgaatgatcaaagtcattaaggactattaagtatacattcactaatagtggttataggaa 30032  T
Q  303 ta-ggaaggtggaagattaaggacatggacatccactaa------tattcataacactccctcttggatgtccatcgaggatatgcctcattaaaaccat 395  Q
     | |||||||| |||||||||||  || |||||||||||      ||||||||||||| || ||||||||||||||  |||||||||||||||||||| |    
T  30031 gatggaaggtgaaagattaagga--tgaacatccactaaacttattattcataacacttccccttggatgtccatct-ggatatgcctcattaaaacctt 29935  T
Q  396 actagagaaaaac 408  Q
    |||| ||||||||    
T  29934 actatagaaaaac 29922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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