View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7682_low_7 (Length: 471)
Name: NF7682_low_7
Description: NF7682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7682_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 18 - 464
Target Start/End: Complemental strand, 29181081 - 29180635
Alignment:
| Q |
18 |
aaaatcacatttgcatagtcataacggtgaacatgaattagctaagaaaggatttgaatttactctgcagcaagatccgtttaattcggaagcttatcgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29181081 |
aaaatcacatttgcatagtcataacggtgaacatgaattagctaagaaaggatttgaatttactctgcagcaagatccgtttaattcggaagcttatcgc |
29180982 |
T |
|
| Q |
118 |
ggtcttttgatggcgaattcggagttaaaggagccaatggagggatttttgaatagggttgatgaggtagtgaagttttttgaggagnnnnnnntggagt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29180981 |
ggtcttttgatggcgaattcggagttaaaggagccaatggagggatttttgaatagggttgatgaggtagtgaagttttttgaggagaaaaaaatggagt |
29180882 |
T |
|
| Q |
218 |
cagaagctagagaatttaagcttttgattgcgcaggtgaaggtgatggaagaggattattcgggtgcattgaaggtgtatgaggaaattgtgaaggaaga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29180881 |
cagaagctagagaatttaagcttttgattgcgcaggtgaaggtgatggaagaggattattcgggtgcattgaaggtgtatgaggaaattgtgaaggaaga |
29180782 |
T |
|
| Q |
318 |
accgagtgattttagaccttatttgtgtcagagtgttgtgtatagtttgcttaggaagaatgatgaagctcagaaacagtttgaggagtttagaagaatt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29180781 |
accgagtgattttagaccttatttgtgtcagagtgttgtgtatagtttgcttcggaagaatgatgaagctcagaaacagtttgaggagtttagaagaatt |
29180682 |
T |
|
| Q |
418 |
gttccggagaatcatccttataaaaagtattttgaggataacaccaa |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29180681 |
gttccggagaatcatccttataaaaagtattttgaggataacaccaa |
29180635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 460
Target Start/End: Original strand, 40271884 - 40272037
Alignment:
| Q |
307 |
gtgaaggaagaaccgagtgattttagaccttatttgtgtcagagtgttgtgtatagtttgcttaggaagaatgatgaagctcagaaacagtttgaggagt |
406 |
Q |
| |
|
||||| |||||||| || |||||||| |||||| |||||||| || || | |||| |||||||| ||||| |||||||| |||| || || || ||| |
|
|
| T |
40271884 |
gtgaaagaagaacctagagattttaggccttatctgtgtcagggtattatatatacattgcttagaaagaaagatgaagccgagaagcaattcgatcagt |
40271983 |
T |
|
| Q |
407 |
ttagaagaattgttccggagaatcatccttataaaaagtattttgaggataaca |
460 |
Q |
| |
|
| ||| |||| ||| ||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
40271984 |
tccgaaagcttgtcccgaagaatcatccttataaagagtattttgatgataaca |
40272037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 12408114 - 12408151
Alignment:
| Q |
163 |
tttttgaatagggttgatgaggtagtgaagttttttga |
200 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
12408114 |
ttttttaatagggttgatgaagtagtgaagttttttga |
12408151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University