View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7682_low_9 (Length: 411)
Name: NF7682_low_9
Description: NF7682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7682_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 27113500 - 27113121
Alignment:
| Q |
18 |
atatatgataagtgcacatgatttgtttgtgttaatatttttatcctaacttttatgcatatatttgattctaaacagtatgctaatgaaaa-tattgat |
116 |
Q |
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| T |
27113500 |
atatatgataagtgcacatgatttgtttgtgtttatatttttatcctaacttttatgcatatatttgattctatacagtatgctaatgaaaaatattgat |
27113401 |
T |
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| Q |
117 |
tcatacgtttaagatgaatgaatttgcagacaaaattgaagcaatggatgttggaatcgacgagttcgggttttgcgattctcctacatcagatgcaatt |
216 |
Q |
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| T |
27113400 |
tcatacgtttaagatgaatgaatttgcagacaaaattgaagcaatagatgttggaatcgacgagttcgggttttgcgattctcctacatcagatgcaatt |
27113301 |
T |
|
| Q |
217 |
tttgatgatgctagtaggggattgctttatggacaaagtttctctgaaataacatacattcatattcatgaatgtgacgatttctctgtacgtataagnn |
316 |
Q |
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||||||| |||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27113300 |
tttgatggtgctaggagaggattgctttatggacaaagcttctctgaaataacatacattcatattcatgaatgtgacgatttctctgtacgtataagaa |
27113201 |
T |
|
| Q |
317 |
nnnnnntataaagtcttgtttattgtataatgtagttagcttcgtctaaattacatgtagtctcgtcacggttctttgatatt |
399 |
Q |
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||| |||||||||||||||||||||||| || ||||||||||||||||| || ||||||||| ||||||||||||| |
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| T |
27113200 |
aaaaaatat--agtcttgtttattgtataatgtagctaacttcgtctaaattacatataatctcgtcac-gttctttgatatt |
27113121 |
T |
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