View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7683_high_1 (Length: 510)

Name: NF7683_high_1
Description: NF7683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7683_high_1
NF7683_high_1
[»] chr7 (6 HSPs)
chr7 (19-508)||(34439532-34440022)
chr7 (71-163)||(34450352-34450444)
chr7 (37-112)||(34466329-34466404)
chr7 (365-400)||(18349758-18349793)
chr7 (306-420)||(45369086-45369201)
chr7 (195-255)||(34466461-34466522)
[»] chr8 (2 HSPs)
chr8 (306-349)||(11038106-11038149)
chr8 (381-414)||(4403646-4403679)
[»] chr3 (2 HSPs)
chr3 (306-341)||(21007767-21007802)
chr3 (388-428)||(48089728-48089768)
[»] chr2 (2 HSPs)
chr2 (306-341)||(36374240-36374275)
chr2 (468-496)||(42973018-42973046)
[»] chr5 (1 HSPs)
chr5 (306-420)||(13224665-13224779)
[»] chr6 (1 HSPs)
chr6 (306-418)||(29240500-29240613)


Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 19 - 508
Target Start/End: Original strand, 34439532 - 34440022
Alignment:
Q  19 gctctaataggagacaagcaagctaagtttggaaccattttggctggtgtggctgaagctggattccttattggattagaaagaaataggtcagactgca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  34439532 gctctaataggagacaagcaagctaagtttggaaccattttggctggtgtggctgaagctggattccttattggattagaaagaaataggtcagactaca 34439631  T
Q  119 cctttctattgatccttgcattgcaagcttttaatcttgctttcaatttttgaaattgaccatgtattttgcatctcaaactatgatgatgggttagaga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34439632 cctttctattgatccttgcattgcaagcttttaatcttgctttcaatttttgaaattgaccatgtattttgcatctcaaactatgatgatgggttggaga 34439731  T
Q  219 aaaataattttataaatgactttagaaatttgaattacatatctcagaaaatgtcattgtatgtttggtctatctatttaataagacaaattgattttaa 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34439732 aaaataattttataaatgactttagaaatttgaattacatatctcagaaaatgtcattatatgtttggtctatctatttaataagacaaattgattttaa 34439831  T
Q  319 aggtatataattgattttgacatatttggatatccttagtagaactgattttgactctataattgattttaatttgaagttaaaatttgaagcttttgcc 418  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34439832 aggtatataattgattttgacatatttggatatctttagtagaactgattttgactctataattgattttaatttgaagttaaaatttgaagcttttgcc 34439931  T
Q  419 tcaacaaatgg-nnnnnnngcctcacatttatctttcaattcatttgtacatgtattcaaacataaattactttacattcatctcactcga 508  Q
    |||||||||||        ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||    
T  34439932 tcaacaaatggttttttttgcctcacatttatctttcaattcatttgtgcatgtatccaaacataaattactttacattcaactcactcga 34440022  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 34450352 - 34450444
Alignment:
Q  71 ctgaagctggattccttattggattagaaagaaataggtcagactgcacctttctattgatccttgcattgcaagcttttaatcttgctttca 163  Q
    ||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||  |||||||||| |||||||||||||    
T  34450352 ctgaagctggattccttattggactagaaagaaacaggtcagactacacctttctattgatccttgcgatgcaagctttcaatcttgctttca 34450444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 34466329 - 34466404
Alignment:
Q  37 caagctaagtttggaaccattttggctggtgtggctgaagctggattccttattggattagaaagaaataggtcag 112  Q
    |||||||||| ||||||| ||||||  | |||| ||||||||||||||||||||||||||||||||||||||||||    
T  34466329 caagctaagtatggaacccttttgggagctgtgtctgaagctggattccttattggattagaaagaaataggtcag 34466404  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 400
Target Start/End: Original strand, 18349758 - 18349793
Alignment:
Q  365 gattttgactctataattgattttaatttgaagtta 400  Q
    ||||||||||| ||||||||||||||||||||||||    
T  18349758 gattttgactccataattgattttaatttgaagtta 18349793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 420
Target Start/End: Original strand, 45369086 - 45369201
Alignment:
Q  306 aaattgattttaaaggtatataattgattttgacatatttggatatcctta-gtagaactgattttgactctataattgattttaatttgaagttaaaat 404  Q
    |||||||||| | |||| || | |||||||||| || ||||||| | || | |||||| ||||||||  |||| |||||||||||| |||||| || |||    
T  45369086 aaattgatttcagaggtgtagatttgattttgagatgtttggatgttctcaagtagaattgattttgcttctagaattgattttaacttgaagctagaat 45369185  T
Q  405 ttgaagcttttgcctc 420  Q
    | | ||||||||||||    
T  45369186 tcggagcttttgcctc 45369201  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 34466461 - 34466522
Alignment:
Q  195 caaactatgatgatgggttaga-gaaaaataattttataaatgactttagaaatttgaatta 255  Q
    |||| |||||||| ||||| || ||||||||||||||||||| | || ||||||||||||||    
T  34466461 caaattatgatgaagggttggatgaaaaataattttataaattagttaagaaatttgaatta 34466522  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 349
Target Start/End: Original strand, 11038106 - 11038149
Alignment:
Q  306 aaattgattttaaaggtatataattgattttgacatatttggat 349  Q
    ||||||||| || ||||||||||||||||||||||| |||||||    
T  11038106 aaattgattctagaggtatataattgattttgacatgtttggat 11038149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 414
Target Start/End: Complemental strand, 4403679 - 4403646
Alignment:
Q  381 ttgattttaatttgaagttaaaatttgaagcttt 414  Q
    ||||||||||||||||||||||||||| ||||||    
T  4403679 ttgattttaatttgaagttaaaatttgtagcttt 4403646  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 341
Target Start/End: Complemental strand, 21007802 - 21007767
Alignment:
Q  306 aaattgattttaaaggtatataattgattttgacat 341  Q
    ||||||||||||||| ||||||||||||||||||||    
T  21007802 aaattgattttaaagatatataattgattttgacat 21007767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 428
Target Start/End: Complemental strand, 48089768 - 48089728
Alignment:
Q  388 taatttgaagttaaaatttgaagcttttgcctcaacaaatg 428  Q
    ||||||||||||| || |||||||||||||||| |||||||    
T  48089768 taatttgaagttagaacttgaagcttttgcctctacaaatg 48089728  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 341
Target Start/End: Original strand, 36374240 - 36374275
Alignment:
Q  306 aaattgattttaaaggtatataattgattttgacat 341  Q
    ||||||||||||||||| ||||||||||||||||||    
T  36374240 aaattgattttaaaggtgtataattgattttgacat 36374275  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 496
Target Start/End: Original strand, 42973018 - 42973046
Alignment:
Q  468 atgtattcaaacataaattactttacatt 496  Q
    |||||||||||||||||||||||||||||    
T  42973018 atgtattcaaacataaattactttacatt 42973046  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 420
Target Start/End: Complemental strand, 13224779 - 13224665
Alignment:
Q  306 aaattgattttaaaggtatataattgattttgacatatttggatatccttagtagaactgattttgactctataattgattttaatttgaagttaaaatt 405  Q
    ||||||||| || || | |||||||||||||||||| ||||||| | |  |||| || ||||||||  ||||||||| |||  || |||||| || ||||    
T  13224779 aaattgattctagagatgtataattgattttgacatgtttggatgttccgagtataattgattttgtttctataattcattcaaacttgaagctagaatt 13224680  T
Q  406 tgaagcttttgcctc 420  Q
    || ||||||| ||||    
T  13224679 tggagcttttacctc 13224665  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 418
Target Start/End: Complemental strand, 29240613 - 29240500
Alignment:
Q  306 aaattgattttaaaggtatataattgattttgacatatttggatatcctta-gtagaactgattttgactctataattgattttaatttgaagttaaaat 404  Q
    ||||||||| || |||| || ||||||||||||||| || ||||||  | | |||||| |||||||  ||| | | |||||| ||| |||||| ||||||    
T  29240613 aaattgattctagaggtgtaaaattgattttgacatgttaggatattttcaagtagaattgattttacctccagagttgattctaacttgaagctaaaat 29240514  T
Q  405 ttgaagcttttgcc 418  Q
    |||||| |||||||    
T  29240513 ttgaagtttttgcc 29240500  T

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