View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7683_high_9 (Length: 250)
Name: NF7683_high_9
Description: NF7683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7683_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 36136641 - 36136808
Alignment:
| Q |
1 |
ttgattataataacttaataagtgtttttgcttgtgattggttctctaagagggtaaagaagaagcatcacatcaagttgaaggctcaagtagttctgtt |
100 |
Q |
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| T |
36136641 |
ttgattataataacttaataagtgtttttgcttgtgattggttctctaagagggtaaagaagaagcatcacatcaagttgaaggctcaagtagttctgtt |
36136740 |
T |
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| Q |
101 |
aatgagcaggaaaattcagacaattctcgagatcagccctgatcatatccaattttattgggtaatgc |
168 |
Q |
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| T |
36136741 |
aatgagcaggaaaattcagacaattctcgagatcagccctgatcatatccaattttattgggtaatgc |
36136808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 239
Target Start/End: Original strand, 36136845 - 36136879
Alignment:
| Q |
205 |
accactatagtgcttatttaacatacctttatatt |
239 |
Q |
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| T |
36136845 |
accactatagtgcttatttaacatacctttatatt |
36136879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 41339524 - 41339677
Alignment:
| Q |
16 |
taataagtgtttttgcttgtgattggttctctaagagggtaaagaagaagcatcacatcaagttgaaggctcaagtagttctgttaatgagcaggaaaat |
115 |
Q |
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| T |
41339524 |
taataagtgcctttgcttgtgcttggttctcttagagggtaaagaagaagcatcacgtcaagttgaaggctcaagtagttctgttaatgagcaagaaaat |
41339623 |
T |
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| Q |
116 |
tcagacaattctcgagatcagccctgatcat-atccaattttattgggtaatgc |
168 |
Q |
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| T |
41339624 |
tcggacaattctccagatcaaccatgttcgtaatccaattttattgggtaatgc |
41339677 |
T |
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