View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7683_low_11 (Length: 245)
Name: NF7683_low_11
Description: NF7683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7683_low_11 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 906390 - 906162
Alignment:
| Q |
1 |
ttgcaacagcagcaccatcactcaattctttgattctcttttgtatctccaagctttcatcaccttccatgattctctttacacatttagcaacttcctc |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
906390 |
ttgcaacagcagcaccatcactcaattctttaattctcttttgtatctccaagctttcatcaccttccatgattctctttacacatttagcaacttcctc |
906291 |
T |
|
| Q |
101 |
tcttttcactatcccactttcatcgtcaacctttggcctcacagccactttgagcacatctgtcaataatctcgcattcatcctttgttctgcaaataga |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
906290 |
tcttttcactatcccactttcatcatcaacctttggcctcacagccactttgagcacatctgtcaataatctcgcattcatcctttgttctgcaaataga |
906191 |
T |
|
| Q |
201 |
ggccatgcaatcacaggcaccccattaac |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
906190 |
ggccatgcaatcacaggcaccccattaac |
906162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 894253 - 894481
Alignment:
| Q |
1 |
ttgcaacagcagcaccatcactcaattctttgattctcttttgtatctccaagctttcatcaccttccatgattctctttacacatttagcaacttcctc |
100 |
Q |
| |
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||||||||||||||||| |||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| || |
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| T |
894253 |
ttgcaacagcagcaccaacactcaattccttaattctcttttgtatttccaagctttcatcaccttccatgattctctttacacagttggcaacttcttc |
894352 |
T |
|
| Q |
101 |
tcttttcactatcccactttcatcgtcaacctttggcctcacagccactttgagcacatctgtcaataatctcgcattcatcctttgttctgcaaataga |
200 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |||||||||||||| | ||||||||||||||||| ||||||||| |
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| T |
894353 |
tcttttcactatcccactttcatcatcaatctttggcctcacagccaccttgagctcatctgtcaataatttggcattcatcctttgttcagcaaataga |
894452 |
T |
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| Q |
201 |
ggccatgcaatcacaggcaccccattaac |
229 |
Q |
| |
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||||||||||||| |||||| |||||||| |
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| T |
894453 |
ggccatgcaatcataggcacaccattaac |
894481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 8294212 - 8294417
Alignment:
| Q |
8 |
agcagcaccatcactcaattctttgattctcttttgtatctccaagctttcatcaccttccatgattctctttacacatttagcaacttcctctcttttc |
107 |
Q |
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|||||||||| ||||||||||||||||| ||||| || || ||||||||||| |||| ||||||||| |||| | ||| |||||||||||| ||| |
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| T |
8294212 |
agcagcaccaacactcaattctttgattttctttctaatttcaaagctttcatctcctttcatgattctttttatagctttggcaacttcctcttgtttt |
8294311 |
T |
|
| Q |
108 |
actatcccactttcatcgtcaacctttggcctcacagccactttgagcacatctgtcaataatctcgcattcatcctttgttctgcaaatagaggccatg |
207 |
Q |
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| |||||| ||||||| ||||||||||||||||| ||||||||||| ||||| || | |||| | |||||||||||||| |||||||| | ||||||| |
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| T |
8294312 |
ataatcccagtttcatcatcaacctttggcctcactgccactttgagtacatcagtgagtaattttgcattcatcctttgctctgcaaacaatggccatg |
8294411 |
T |
|
| Q |
208 |
caatca |
213 |
Q |
| |
|
|||||| |
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|
| T |
8294412 |
caatca |
8294417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 33257543 - 33257338
Alignment:
| Q |
8 |
agcagcaccatcactcaattctttgattctcttttgtatctccaagctttcatcaccttccatgattctctttacacatttagcaacttcctctcttttc |
107 |
Q |
| |
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|||||||| | ||||||||||||||||| ||||| | || || ||||||||||| ||||||||||||||||||| | ||| | |||||||||| ||| |
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| T |
33257543 |
agcagcactaacactcaattctttgattttctttcgaatttcaaagctttcatctccttccatgattctctttaaagctttggagacttcctctcgtttt |
33257444 |
T |
|
| Q |
108 |
actatcccactttcatcgtcaacctttggcctcacagccactttgagcacatctgtcaataatctcgcattcatcctttgttctgcaaatagaggccatg |
207 |
Q |
| |
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| ||||||| ||||| | |||||||||||||| || |||||||| |||||||| || | |||| | |||||||| ||||| |||||||| | ||||||| |
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| T |
33257443 |
attatcccagtttcaccatcaacctttggccttactgccacttttagcacatcagtgagtaattttgcattcattctttgctctgcaaacaatggccatg |
33257344 |
T |
|
| Q |
208 |
caatca |
213 |
Q |
| |
|
|||||| |
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|
| T |
33257343 |
caatca |
33257338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 1661 - 1456
Alignment:
| Q |
8 |
agcagcaccatcactcaattctttgattctcttttgtatctccaagctttcatcaccttccatgattctctttacacatttagcaacttcctctcttttc |
107 |
Q |
| |
|
|||||||| | ||||||||||||||||| ||||| | || || ||||||||||| ||||||||||||||||||| | ||| | |||||||||| ||| |
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| T |
1661 |
agcagcactaacactcaattctttgattttctttcgaatttcaaagctttcatctccttccatgattctctttaaagctttggagacttcctctcgtttt |
1562 |
T |
|
| Q |
108 |
actatcccactttcatcgtcaacctttggcctcacagccactttgagcacatctgtcaataatctcgcattcatcctttgttctgcaaatagaggccatg |
207 |
Q |
| |
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| ||||||| ||||| | |||||||||||||| || |||||||| |||||||| || | |||| | |||||||| ||||| |||||||| | ||||||| |
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| T |
1561 |
attatcccagtttcaccatcaacctttggccttactgccacttttagcacatcagtgagtaattttgcattcattctttgctctgcaaacaatggccatg |
1462 |
T |
|
| Q |
208 |
caatca |
213 |
Q |
| |
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|||||| |
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| T |
1461 |
caatca |
1456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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