View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7683_low_12 (Length: 218)
Name: NF7683_low_12
Description: NF7683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7683_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 41804293 - 41804479
Alignment:
| Q |
14 |
aatatcaataagaaaataaaaacaaacatttataaatacaactatgggaaaagccattgtttcagttgttctagtttcccttgttgtggcaatatttctg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41804293 |
aatatcaataagaaaataaaaacaaacatttataaatacaactatgggaaaagccattgtttcagttgttctagtttcccttgttgtggcaatatttctg |
41804392 |
T |
|
| Q |
114 |
aatggttataatgctgaggatggaggaagaggtaatccaccaaagaaagatgatggtatttacaaatctcaaaagtttggtcattgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41804393 |
aatggttataatgctgaggatggaggaagaggtaatccaccaaagaaagatgatggtatttacaaatctcaaaagtttggtcattgt |
41804479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 3385011 - 3385190
Alignment:
| Q |
14 |
aatatcaataagaaaataaaaa-caaacatttataaatacaactatgggaaaagccattgtttcagttgttctagtttcccttgttgtggcaatatttct |
112 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| ||||| ||||||| ||| |||||| |||| ||||||||||||||||||| ||||||||| |||| |
|
|
| T |
3385011 |
aatatcaataagaaaataaaaaacaagcatttatatataca-ctatggggaaaaccattgcttcacttgttctagtttcccttgtagtggcaatacttct |
3385109 |
T |
|
| Q |
113 |
gaatggttataatgctgaggatggaggaagaggtaatccaccaaagaaagatgatggtatttacaaatctcaaaagtttgg |
193 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3385110 |
gaatggttataatgccgaggatggaggaagaggtaatcaactgaagaaagatgatgctatttacaaatctcaaaagtttgg |
3385190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 188
Target Start/End: Original strand, 34357101 - 34357232
Alignment:
| Q |
54 |
actatgggaaaagccattgtttcagttgttctagtttcccttgttgtggcaatatttctgaatggttataatgctgaggatggaggaagaggtaatccac |
153 |
Q |
| |
|
||||||| |||| |||||| |||| |||||||||||| ||| ||||| ||||| |||||||| ||| |||||||| || |||||||| ||| | || |
|
|
| T |
34357101 |
actatggcaaaaaccattgcttcacttgttctagttttcctagttgttgcaatg---ctgaatggctatggtgctgagggtgcaggaagagataaccaac |
34357197 |
T |
|
| Q |
154 |
caaagaaagatgatggtatttacaaatctcaaaag |
188 |
Q |
| |
|
||||||||||||||| |||| |||| ||||||| |
|
|
| T |
34357198 |
ataagaaagatgatggtgtttataaatatcaaaag |
34357232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 191
Target Start/End: Original strand, 4218140 - 4218271
Alignment:
| Q |
54 |
actatgggaaaagccattgtttcagttgttctagtttcccttgttgtggcaatatttctgaatggttataatgctgaggatggaggaagaggtaatccac |
153 |
Q |
| |
|
||||||| |||| |||||| |||| ||||| ||||| ||||||||| ||||| || |||||| |||| |||||||| | |||||||||||| || |
|
|
| T |
4218140 |
actatggcaaaaaccattgcttcaattgttttagttctccttgttgttgcaatttt---gaatggctatagtgctgagggtactggaagaggtaatgaac |
4218236 |
T |
|
| Q |
154 |
caaagaaagatgatggtatttacaaatctcaaaagttt |
191 |
Q |
| |
|
| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
4218237 |
ctaa---agatgatcgtatttacaaatctcaaaagttt |
4218271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 4215651 - 4215726
Alignment:
| Q |
112 |
tgaatggttataatgctgaggatggaggaagaggtaatccaccaaagaaagatgatggtatttacaaatctcaaaa |
187 |
Q |
| |
|
||||||||||| |||||||| || || || | |||||| |||||||||||| |||| ||||||||||||| |||| |
|
|
| T |
4215651 |
tgaatggttattgtgctgagggtgcagaaacaagtaatcaaccaaagaaagacgatgatatttacaaatctgaaaa |
4215726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University