View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7683_low_3 (Length: 387)
Name: NF7683_low_3
Description: NF7683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7683_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 373
Target Start/End: Original strand, 31543306 - 31543663
Alignment:
| Q |
16 |
attgttgtccaaagagatgttcttcaagctagagagagtgcatagagaatgtggaaccaaaccaactaattgattggaatgaagctgaagatcaaacaaa |
115 |
Q |
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| T |
31543306 |
attgatgtccaaagagatgttcttcaagctagagagagtgcatagcgaatgtggaaccaaaccaactaattgattggaatgaagctgaagatcaaacaaa |
31543405 |
T |
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| Q |
116 |
ttagtggaactagacatgttaggaattggacctgcgaacacgttgttgttaagccacgcctgagacaagaatctcatggatgatataacatcaattgtac |
215 |
Q |
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| T |
31543406 |
ttagtggaactagacatgttaggaattggacctgcgaacatgttgttgttaagccacgcctgagacaagaacctcatagatgatataacatcaattgtac |
31543505 |
T |
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| Q |
216 |
cgataaacccactaaacgccccttggttattgagtcgcaaataccttattgaagattccccaagagaagggggaagagttccacttaagttgttgtgaga |
315 |
Q |
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| T |
31543506 |
cggtaaacccactaaacgccccttggttattgagtcgcaaataccttattgaagattccccaagagaagggggaagagttccacttaagttgttgtgaga |
31543605 |
T |
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| Q |
316 |
aagaaaaacagtatgcaaacgcggaaaccatttgaacatatctgatggtaatgaagct |
373 |
Q |
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| T |
31543606 |
aagaaaaacagtatgcaaacgcggaaaccatttgaacatatctgatggtaatgaagct |
31543663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 15 - 368
Target Start/End: Complemental strand, 31551342 - 31550988
Alignment:
| Q |
15 |
tattgttgtccaaagagatgttcttcaagctagagagagtgcatagagaatgtggaaccaaaccaactaattgattggaatgaagctgaagatcaaacaa |
114 |
Q |
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| T |
31551342 |
tattgttgtccaaagagatgttggtcaagctagggagagagaacaacgaagatggaaccaaacctattaaaccatttgagtgaagttggagatcaaacaa |
31551243 |
T |
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| Q |
115 |
attagtggaactagacatgttaggaattggacctgcgaacacgttgttgttaagccacgcctgagacaagaatctcatggatgatataacatcaattgta |
214 |
Q |
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| T |
31551242 |
atgagtggaatttgacatgttaggaattgtaccagtgaacgcgttgttgttaagccacgcttgagacaaaaatctcatagacgatatcacttcaattgta |
31551143 |
T |
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| Q |
215 |
ccgataaacccactaaacgccccttgg-ttattgagtcgcaaataccttattgaagattccccaagagaagggggaagagttccacttaagttgttgtga |
313 |
Q |
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| T |
31551142 |
cccgtaaacccattcaatctgtcttggtttgttgagtcgtaaataccttactacagattttccaagagacaggggaagtgttccacggatgttgttgtga |
31551043 |
T |
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| Q |
314 |
gaaagaaaaacagtatgcaaacgcggaaaccatttgaacatatctgatggtaatg |
368 |
Q |
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| T |
31551042 |
gagagagaaacagtatgcaatcttggaaaccaatcgaacacgtctgatggcaatg |
31550988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 106 - 282
Target Start/End: Original strand, 31534749 - 31534925
Alignment:
| Q |
106 |
atcaaacaaattagtggaactagacatgttaggaattggacctgcgaacacgttgttgttaagccacgcctgagacaagaatctcatggatgatataaca |
205 |
Q |
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||||||||||| |||| || | |||||||| || |||| ||||| ||| |||||| | |||||||||||||||||| ||||||||||||||||| |
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| T |
31534749 |
atcaaacaaatgagtgcaattggacatgttgggtattgaacctgtgaatgtgttgttctgaagccacgcctgagacaaattactcatggatgatataacg |
31534848 |
T |
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| Q |
206 |
tcaattgtaccgataaacccactaaacgccccttggttattgagtcgcaaataccttattgaagattccccaagaga |
282 |
Q |
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| T |
31534849 |
tcaattctacccgaaaacccactgtattccccttggtcattgaaccgcaaatactttactttagatttcccaagaga |
31534925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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