View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7683_low_4 (Length: 302)
Name: NF7683_low_4
Description: NF7683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7683_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 36136272 - 36135985
Alignment:
| Q |
1 |
ggagttacttatacttggagattttgtttatcaaaattacattaatgggagaaaatacatttattaatttatcaagcaaaatatcacactcaaaagtgga |
100 |
Q |
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| T |
36136272 |
ggagttacttatgcttggagattttgtttatcaaaattacattaatgggagaaaatacatttattaatttatcaaacaaaatatcacactcaaaagtgga |
36136173 |
T |
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| Q |
101 |
aaaatatcattgctcttaagaatatactgcagacacttcatacaacttctatattcagcgaacaaattaacgnnnnnnncttacacgtatgtaacagaaa |
200 |
Q |
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| T |
36136172 |
aaaatatcattgctcttaagaatatactgcagacacttcatacaacttctatattcagcgaacaaattaacgtttttttcttacacgtatgtaacagaaa |
36136073 |
T |
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| Q |
201 |
catcttaaataaaaagaattgttccgatgtagg-tttaaagttaaatacctttactgttgctacgctgctacgccccaggttgttgct |
287 |
Q |
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| T |
36136072 |
catcttaaataaaaagaattgttccgatgaaggttttaaagttatatacctttactgatgctacgcggctacgccccaggttgttgct |
36135985 |
T |
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Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 82 - 262
Target Start/End: Complemental strand, 41337737 - 41337556
Alignment:
| Q |
82 |
tatcacactcaaaagtggaaaaatatcattgctcttaagaatatactgcagacacttcatacaacttctatattcagcgaacaaattaacg-nnnnnnnc |
180 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| | |
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| T |
41337737 |
tatcacactcaaaagtggaaaaatatcaatgctcttaagaatatactgtagacacttcatacaccttctatattcagcgaacaaatcaacgttctttttc |
41337638 |
T |
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| Q |
181 |
ttacacgtatgtaacagaaacatcttaaataaaaagaattgttccgatgtagg-tttaaagttaaatacctttactgttgcta |
262 |
Q |
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| T |
41337637 |
ttacacgtatgtaacagaatcatctttgat-aaaagaattgtttcaatgaaggttttaaagtgaaatacctctactgatgcta |
41337556 |
T |
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