View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7683_low_5 (Length: 301)
Name: NF7683_low_5
Description: NF7683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7683_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 36136248 - 36136524
Alignment:
| Q |
1 |
aaaatctccaagtataagtaactccaaattatgctgaataatatatcagtggatccaaactattgcaaattttagatgcctaactcaacattgcaatact |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36136248 |
aaaatctccaagcataagtaactccaaattatgctgaataatatatcagtggatccaaactattgcaaattttagatgcctaactcaacattgcaatact |
36136347 |
T |
|
| Q |
101 |
tctgtaccagcaaatcttctcctatatacagtgaatctccaactcaacattacaatacttctgtctcaaaatgagaaagtggaccgacctattcttgttg |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36136348 |
tctgtatcagcaaatcttctcctatatacagtgaatctccaactcaacattacaatacttctgtctcaaa--gagaaagtggaccgacctattcttgttg |
36136445 |
T |
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| Q |
201 |
cttctgtattcaattttctagggaaaggttttccagctgtggtcaaaatcattacagacggaaaaatgagcaaccaggt |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36136446 |
tttctgtattcaattttctagggaaaggttttccagctgtggtcaaaatcattacagacggaaaaatgagcaaccaggt |
36136524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 41337764 - 41337843
Alignment:
| Q |
1 |
aaaatctccaagtataagtaactccaaattatgctgaataatatatcagtggatccaaactattgcaaattttagatgcc |
80 |
Q |
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|||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
41337764 |
aaaatctctaagtatacataactccaaattatgctaaataatatatcagtggatccaaacaattgcaaattttggatgcc |
41337843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 41339373 - 41339432
Alignment:
| Q |
220 |
agggaaaggttttccagctgtggtcaaaatcattacagacggaaaaatgagcaaccaggt |
279 |
Q |
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|||||||||||||||||| |||||| |||||||| |||| |||||||||||||||||||| |
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| T |
41339373 |
agggaaaggttttccagccgtggtcgaaatcattgcagatggaaaaatgagcaaccaggt |
41339432 |
T |
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