View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7683_low_8 (Length: 250)

Name: NF7683_low_8
Description: NF7683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7683_low_8
NF7683_low_8
[»] scaffold0277 (2 HSPs)
scaffold0277 (1-231)||(5001-5231)
scaffold0277 (115-231)||(13962-14073)
[»] scaffold0349 (3 HSPs)
scaffold0349 (1-231)||(3752-3993)
scaffold0349 (82-231)||(8131-8274)
scaffold0349 (83-231)||(14685-14825)
[»] chr6 (29 HSPs)
chr6 (1-231)||(27725175-27725416)
chr6 (101-231)||(26655721-26655846)
chr6 (101-231)||(26761692-26761817)
chr6 (82-231)||(27718709-27718852)
chr6 (159-231)||(28786063-28786135)
chr6 (159-231)||(28792184-28792256)
chr6 (1-80)||(28785921-28786000)
chr6 (130-231)||(27605041-27605137)
chr6 (83-231)||(27698824-27698964)
chr6 (115-231)||(28780885-28780996)
chr6 (159-208)||(27611355-27611404)
chr6 (159-216)||(26823631-26823688)
chr6 (159-231)||(27229019-27229089)
chr6 (159-231)||(25538358-25538430)
chr6 (172-231)||(27678744-27678803)
chr6 (129-208)||(26802198-26802276)
chr6 (172-230)||(27706733-27706791)
chr6 (159-231)||(25481560-25481632)
chr6 (159-231)||(26048663-26048735)
chr6 (159-231)||(26055744-26055816)
chr6 (159-231)||(26069832-26069904)
chr6 (159-231)||(26075714-26075786)
chr6 (159-231)||(26142683-26142755)
chr6 (172-227)||(27338399-27338454)
chr6 (172-227)||(27399139-27399194)
chr6 (90-149)||(27593385-27593439)
chr6 (90-149)||(27678680-27678734)
chr6 (90-149)||(27706801-27706855)
chr6 (159-230)||(27427934-27428003)
[»] chr4 (6 HSPs)
chr4 (161-231)||(18699717-18699787)
chr4 (155-231)||(18655794-18655870)
chr4 (155-231)||(18679884-18679960)
chr4 (155-231)||(18731821-18731897)
chr4 (159-230)||(17989368-17989437)
chr4 (159-230)||(18073552-18073621)
[»] scaffold1254 (1 HSPs)
scaffold1254 (172-229)||(249-306)
[»] scaffold0419 (1 HSPs)
scaffold0419 (172-229)||(7323-7380)
[»] scaffold0003 (1 HSPs)
scaffold0003 (159-230)||(59360-59429)
[»] chr1 (1 HSPs)
chr1 (177-221)||(28164689-28164733)


Alignment Details
Target: scaffold0277 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 5231 - 5001
Alignment:
Q  1 gcagttcaaaactaaaacatgttaaaagtcttgtagtacaatgatatttactgtatacatgattggtccacacggctatatgagaccatttttctcataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5231 gcagttcaaaactaaaacatgttaaaagtcttgtagtacaatgatatttactgtatacatgattggtccacacggctatatgagaccatttttctcataa 5132  T
Q  101 gttataaagttacctatcaaggactttacatcacagaccacaaaaacttattcattaaattcatattctgaattctcaaactcttttttcatccaatttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5131 gttataaagttacctatcaaggactttacatcacagaccacaaaaacttattcattaaattcatattctgaattctcaaactcttttttcatccaatttc 5032  T
Q  201 tctcaattcttatggcaatacaatcaccttc 231  Q
    |||||||||||||||| ||||||||||||||    
T  5031 tctcaattcttatggctatacaatcaccttc 5001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 115 - 231
Target Start/End: Complemental strand, 14073 - 13962
Alignment:
Q  115 tatcaaggactttacatcacagaccacaaaaacttattcattaaattcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatg 214  Q
    |||||| ||||||| ||||||||||||||||||  | |||||     ||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  14073 tatcaaagactttaaatcacagaccacaaaaacaaactcatt-----catattctgaattctcaaactcttttttcatccaatttctctcaattatcatg 13979  T
Q  215 gcaatacaatcaccttc 231  Q
    || || |||| ||||||    
T  13978 gctatgcaattaccttc 13962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 3993 - 3752
Alignment:
Q  1 gcagttcaaaactaaaacatgttaaaagtcttgtagtacaatgatatttactgtatacatgattggt-ccacacggctata------------------- 80  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||    ||||||||| |||||||||||||                       
T  3993 gcagttcaaaactaaaacatgttaaaagtcttgtaatacaatgatatttattgt----atgattggtcccacacggctataggaagtggccaggaagttt 3898  T
Q  81 -tgagaccatttttctcataagttataaagttacctatcaaggactttacatcacagaccacaaaaacttattcattaaattcatattctgaattctcaa 179  Q
      |||||||||||||||||||||||||||||||| |||||| ||||| |||| |||||||||||||| |||        |||||||||||| ||||||||    
T  3897 cagagaccatttttctcataagttataaagttacttatcaaagacttcacataacagaccacaaaaattta------ccattcatattctgcattctcaa 3804  T
Q  180 actcttttttcatccaatttctctcaattcttatggcaatacaatcaccttc 231  Q
    ||||||||||||||| ||||||||||||| | ||||| ||||||||||||||    
T  3803 actcttttttcatcctatttctctcaattgtcatggctatacaatcaccttc 3752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 82 - 231
Target Start/End: Complemental strand, 8274 - 8131
Alignment:
Q  82 gagaccatttttctcataagttataaagttacctatcaaggactttacatcacagaccacaaaaacttattcattaaattcatattctgaattctcaaac 181  Q
    |||||||||||||||||  ||||||||||||| |||||| ||||| |||||||||| |||||||| | | |||||     ||||||||| ||||||||||    
T  8274 gagaccatttttctcatt-gttataaagttacttatcaaagacttcacatcacagaacacaaaaattcactcatt-----catattctgcattctcaaac 8181  T
Q  182 tcttttttcatccaatttctctcaattcttatggcaatacaatcaccttc 231  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  8180 tcttttttcatcctatttctctcaattctcatggctatacaatcaccttc 8131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 14825 - 14685
Alignment:
Q  83 agaccatttttctcataagttataaagttacctatcaaggactttacatcacagaccacaaaaacttattcattaaattcatattctgaattctcaaact 182  Q
    |||||||||||||| |  ||||||||||||| |||||| ||||| |||||||||| |||||||  ||| |||||     ||||||||| |||||||||||    
T  14825 agaccatttttctcctt-gttataaagttacttatcaaagacttcacatcacagaacacaaaat-ttactcatt-----catattctgcattctcaaact 14733  T
Q  183 cttttttcatccaatttctctcaattcttatggcaatacaatcaccttc 231  Q
    |||||| ||||| ||||||||||||||| ||||| ||||||||||||||    
T  14732 cttttt-catcctatttctctcaattctcatggctatacaatcaccttc 14685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 27725416 - 27725175
Alignment:
Q  1 gcagttcaaaactaaaacatgttaaaagtcttgtagtacaatgatatttactgtatacatgattggt-ccacacggctata------------------- 80  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||    ||||||||| |||||||||||||                       
T  27725416 gcagttcaaaactaaaacatgttaaaagtcttgtaatacaatgatatttattgt----atgattggtcccacacggctataggaagtggccaggaagttt 27725321  T
Q  81 -tgagaccatttttctcataagttataaagttacctatcaaggactttacatcacagaccacaaaaacttattcattaaattcatattctgaattctcaa 179  Q
      |||||||||||||||||||||||||||||||| |||||| ||||| |||| |||||||||||||| |||        |||||||||||| ||||||||    
T  27725320 cagagaccatttttctcataagttataaagttacttatcaaagacttcacataacagaccacaaaaattta------ccattcatattctgcattctcaa 27725227  T
Q  180 actcttttttcatccaatttctctcaattcttatggcaatacaatcaccttc 231  Q
    ||||||||||||||| ||||||||||||| | ||||| ||||||||||||||    
T  27725226 actcttttttcatcctatttctctcaattgtcatggctatacaatcaccttc 27725175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 26655721 - 26655846
Alignment:
Q  101 gttataaagttacctatcaaggactttacatcacagaccacaaaaacttattcattaaattcatattctgaattctcaaactcttttttcatccaatttc 200  Q
    ||||||||||||| || ||| ||||||||||||||||||||||||||||| ||     |||||||||||| |||| ||||||||||||||||||| ||||    
T  26655721 gttataaagttacttaccaaagactttacatcacagaccacaaaaacttactc-----attcatattctgcattcccaaactcttttttcatccattttc 26655815  T
Q  201 tctcaattcttatggcaatacaatcaccttc 231  Q
    |||||||||| ||||| ||||||||||||||    
T  26655816 tctcaattctcatggctatacaatcaccttc 26655846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 26761692 - 26761817
Alignment:
Q  101 gttataaagttacctatcaaggactttacatcacagaccacaaaaacttattcattaaattcatattctgaattctcaaactcttttttcatccaatttc 200  Q
    ||||||||||||| || ||| ||||||||||||||||||||||||||||| ||     |||||||||||| |||| ||||||||||||||||||| ||||    
T  26761692 gttataaagttacttaccaaagactttacatcacagaccacaaaaacttactc-----attcatattctgcattcccaaactcttttttcatccattttc 26761786  T
Q  201 tctcaattcttatggcaatacaatcaccttc 231  Q
    |||||||||| ||||| ||||||||||||||    
T  26761787 tctcaattctcatggctatacaatcaccttc 26761817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 82 - 231
Target Start/End: Complemental strand, 27718852 - 27718709
Alignment:
Q  82 gagaccatttttctcataagttataaagttacctatcaaggactttacatcacagaccacaaaaacttattcattaaattcatattctgaattctcaaac 181  Q
    |||||||||||||||||  ||||||||||||| |||||| ||||| |||||||||| |||||||| | | |||||     ||||||||| ||||||||||    
T  27718852 gagaccatttttctcatt-gttataaagttacttatcaaagacttcacatcacagaacacaaaaattcactcatt-----catattctgcattctcaaac 27718759  T
Q  182 tcttttttcatccaatttctctcaattcttatggcaatacaatcaccttc 231  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  27718758 tcttttttcatcctatttctctcaattctcatggctatacaatcaccttc 27718709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 28786063 - 28786135
Alignment:
Q  159 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcaccttc 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28786063 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttc 28786135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 28792184 - 28792256
Alignment:
Q  159 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcaccttc 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28792184 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttc 28792256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 28785921 - 28786000
Alignment:
Q  1 gcagttcaaaactaaaacatgttaaaagtcttgtagtacaatgatatttactgtatacatgattggtccacacggctata 80  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  28785921 gcagttcaaaactaaaacatgttaaaagtcatgtagtacaatgatatttagtatatacatgattggtccacacggctata 28786000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 27605137 - 27605041
Alignment:
Q  130 atcacagaccacaaaaacttattcattaaattcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcacct 229  Q
    ||||||||||||||||||||| ||     |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| || |||| ||||    
T  27605137 atcacagaccacaaaaacttactc-----attcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattacct 27605043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 27698964 - 27698824
Alignment:
Q  83 agaccatttttctcataagttataaagttacctatcaaggactttacatcacagaccacaaaaacttattcattaaattcatattctgaattctcaaact 182  Q
    |||||||||||||| |  ||||||||||||| |||||| ||||| |||||||||| |||||||  ||| |||||     ||||||||| |||||||||||    
T  27698964 agaccatttttctcctt-gttataaagttacttatcaaagacttcacatcacagaacacaaaat-ttactcatt-----catattctgcattctcaaact 27698872  T
Q  183 cttttttcatccaatttctctcaattcttatggcaatacaatcaccttc 231  Q
    |||||| ||||| ||||||||||||||| ||||| ||||||||||||||    
T  27698871 cttttt-catcctatttctctcaattctcatggctatacaatcaccttc 27698824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 115 - 231
Target Start/End: Original strand, 28780885 - 28780996
Alignment:
Q  115 tatcaaggactttacatcacagaccacaaaaacttattcattaaattcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatg 214  Q
    |||||| ||||||| ||||||||||||||||||  | |||||     ||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  28780885 tatcaaagactttaaatcacagaccacaaaaacaaactcatt-----catattctgaattctcaaactcttttttcatccaatttctctcaattatcatg 28780979  T
Q  215 gcaatacaatcaccttc 231  Q
    || || |||| ||||||    
T  28780980 gctatgcaattaccttc 28780996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 27611404 - 27611355
Alignment:
Q  159 attcatattctgaattctcaaactcttttttcatccaatttctctcaatt 208  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27611404 attcatattctgcattctcaaactcttttttcatccaatttctctcaatt 27611355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 26823631 - 26823688
Alignment:
Q  159 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggc 216  Q
    |||||||||||| ||||||||||||||| ||| ||||||||||||||||||| |||||    
T  26823631 attcatattctgcattctcaaactctttcttcgtccaatttctctcaattctcatggc 26823688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 27229019 - 27229089
Alignment:
Q  159 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcaccttc 231  Q
    |||||||||||| ||||| ||||||||||  ||||||||||||||||| ||| ||||| ||||||||||||||    
T  27229019 attcatattctgcattctaaaactctttt--catccaatttctctcaagtctcatggctatacaatcaccttc 27229089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 25538358 - 25538430
Alignment:
Q  159 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcaccttc 231  Q
    |||||||||||  ||| ||||| ||||||||||||||| |||| |||||||| ||||| || |||||||||||    
T  25538358 attcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 25538430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 27678744 - 27678803
Alignment:
Q  172 attctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcaccttc 231  Q
    |||||||||||||||||||||| ||||||||| || ||| ||||| || |||||||||||    
T  27678744 attctcaaactcttttttcatctaatttctctaaaatctcatggctatgcaatcaccttc 27678803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 26802198 - 26802276
Alignment:
Q  129 catcacagaccacaaaaacttattcattaaattcatattctgaattctcaaactc----ttttttcatccaatttctctcaatt 208  Q
    |||||||||||||||||||||| ||     |||||||||||| ||||||||||||    ||||||||||||||||||| |||||    
T  26802198 catcacagaccacaaaaacttactc-----attcatattctgcattctcaaactcttttttttttcatccaatttctcacaatt 26802276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 27706791 - 27706733
Alignment:
Q  172 attctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcacctt 230  Q
    |||||||||||||||||||||| ||||||||| || ||| ||||| || ||||||||||    
T  27706791 attctcaaactcttttttcatctaatttctctaaaatctcatggctatgcaatcacctt 27706733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 25481560 - 25481632
Alignment:
Q  159 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcaccttc 231  Q
    |||||||||||  ||| ||||| | ||||||||||||| |||| |||||||| ||||| || |||||||||||    
T  25481560 attcatattctccattttcaaagttttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 25481632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 26048663 - 26048735
Alignment:
Q  159 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcaccttc 231  Q
    |||||||||||  ||| ||||| ||||||||||||||  |||| |||||||| ||||| || |||||||||||    
T  26048663 attcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttc 26048735  T

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Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 26055744 - 26055816
Alignment:
Q  159 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcaccttc 231  Q
    |||||||||||  ||| ||||| ||||||||||||||  |||| |||||||| ||||| || |||||||||||    
T  26055744 attcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttc 26055816  T

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Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 26069832 - 26069904
Alignment:
Q  159 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcaccttc 231  Q
    |||||||||||  ||| ||||| ||||||||||||||  |||| |||||||| ||||| || |||||||||||    
T  26069832 attcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttc 26069904  T

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Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 26075714 - 26075786
Alignment:
Q  159 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcaccttc 231  Q
    |||||||||||  ||| ||||| ||||||||||||||  |||| |||||||| ||||| || |||||||||||    
T  26075714 attcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttc 26075786  T

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Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 26142683 - 26142755
Alignment:
Q  159 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcaccttc 231  Q
    |||||||||||  ||| ||||| ||||||||||||||  |||| |||||||| ||||| || |||||||||||    
T  26142683 attcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttc 26142755  T

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Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 27338454 - 27338399
Alignment:
Q  172 attctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcac 227  Q
    ||||||||||| ||||||||||  ||||||||||||||| ||||| || |||||||    
T  27338454 attctcaaacttttttttcatcttatttctctcaattctcatggctatgcaatcac 27338399  T

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Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 27399194 - 27399139
Alignment:
Q  172 attctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcac 227  Q
    ||||||||||| ||||||||||  ||||||||||||||| ||||| || |||||||    
T  27399194 attctcaaacttttttttcatcttatttctctcaattctcatggctatgcaatcac 27399139  T

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Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 149
Target Start/End: Complemental strand, 27593439 - 27593385
Alignment:
Q  90 ttttctcataagttataaagttacctatcaaggactttacatcacagaccacaaaaactt 149  Q
    |||||||||||||||||||||||| |||||| ||||     |||||||||||||||||||    
T  27593439 ttttctcataagttataaagttacttatcaaagact-----tcacagaccacaaaaactt 27593385  T

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Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 27678680 - 27678734
Alignment:
Q  90 ttttctcataagttataaagttacctatcaaggactttacatcacagaccacaaaaactt 149  Q
    |||||||||||||||||||||||| |||||| ||||     |||||||||||||||||||    
T  27678680 ttttctcataagttataaagttacttatcaaagact-----tcacagaccacaaaaactt 27678734  T

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Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 149
Target Start/End: Complemental strand, 27706855 - 27706801
Alignment:
Q  90 ttttctcataagttataaagttacctatcaaggactttacatcacagaccacaaaaactt 149  Q
    |||||||||||||||||||||||| |||||| ||||     |||||||||||||||||||    
T  27706855 ttttctcataagttataaagttacttatcaaagact-----tcacagaccacaaaaactt 27706801  T

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Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 27428003 - 27427934
Alignment:
Q  159 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcacctt 230  Q
    |||||||||||| ||||||||||||  || |||||  ||||||||||||||| ||||| || |||| |||||    
T  27428003 attcatattctgcattctcaaactc--ttctcatcttatttctctcaattctcatggccatgcaattacctt 27427934  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 18699787 - 18699717
Alignment:
Q  161 tcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcaccttc 231  Q
    |||||||||| |||||||||||||||||||||| | |||||||||||||| ||||| || |||||||||||    
T  18699787 tcatattctgcattctcaaactcttttttcatctagtttctctcaattctcatggctatgcaatcaccttc 18699717  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 18655870 - 18655794
Alignment:
Q  155 ttaaattcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcaccttc 231  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||||||||||| | ||||| |  |||||||||||    
T  18655870 ttaaactcatattctgcattctcaaactcttttttcatccagtttctctcaattttcatggctaggcaatcaccttc 18655794  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 18679960 - 18679884
Alignment:
Q  155 ttaaattcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcaccttc 231  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||||||| ||| | ||||| || |||||||||||    
T  18679960 ttaaactcatattctgcattctcaaactcttttttcatccagtttctctctattttcatggctatgcaatcaccttc 18679884  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 18731897 - 18731821
Alignment:
Q  155 ttaaattcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcaccttc 231  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||||||| ||| | ||||| || |||||||||||    
T  18731897 ttaaactcatattctgcattctcaaactcttttttcatccagtttctctcgattttcatggctatgcaatcaccttc 18731821  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 17989437 - 17989368
Alignment:
Q  159 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcacctt 230  Q
    |||||||||||| ||||||||||||  || |||||  ||||||||||||||| ||||| || |||| |||||    
T  17989437 attcatattctgcattctcaaactc--ttctcatcttatttctctcaattctcatggccatgcaattacctt 17989368  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 18073552 - 18073621
Alignment:
Q  159 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcacctt 230  Q
    |||||||||||| ||||||||||||  || |||||  ||||||||||||||| ||||| || |||| |||||    
T  18073552 attcatattctgcattctcaaactc--ttctcatcttatttctctcaattctcatggccatgcaattacctt 18073621  T

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Target: scaffold1254 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 306 - 249
Alignment:
Q  172 attctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcacct 229  Q
    |||||||||||||||||||||| |||||||||||||||| ||||| || |||||||||    
T  306 attctcaaactcttttttcatctaatttctctcaattctcatggctatgcaatcacct 249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 7323 - 7380
Alignment:
Q  172 attctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcacct 229  Q
    |||||||||||||||||||||| |||||||||||||||| ||||| || |||||||||    
T  7323 attctcaaactcttttttcatctaatttctctcaattctcatggctatgcaatcacct 7380  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 59360 - 59429
Alignment:
Q  159 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggcaatacaatcacctt 230  Q
    |||||||||||| ||||||||||||  || |||||  ||||||||||||||| ||||| || |||| |||||    
T  59360 attcatattctgcattctcaaactc--ttctcatcttatttctctcaattctcatggccatgcaattacctt 59429  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 28164733 - 28164689
Alignment:
Q  177 caaactcttttttcatccaatttctctcaattcttatggcaatac 221  Q
    ||||||||||| ||||||||||||| |||||||| ||||| ||||    
T  28164733 caaactcttttctcatccaatttctgtcaattctcatggctatac 28164689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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