View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7684_low_1 (Length: 584)

Name: NF7684_low_1
Description: NF7684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7684_low_1
NF7684_low_1
[»] chr6 (12 HSPs)
chr6 (18-566)||(27095561-27096110)
chr6 (218-290)||(15081654-15081726)
chr6 (229-300)||(11070729-11070799)
chr6 (223-278)||(19247349-19247402)
chr6 (88-131)||(2165527-2165570)
chr6 (88-131)||(2177160-2177203)
chr6 (77-167)||(32254059-32254148)
chr6 (91-124)||(2614472-2614505)
chr6 (91-124)||(17269212-17269245)
chr6 (86-154)||(3924655-3924723)
chr6 (266-294)||(21709311-21709339)
chr6 (266-294)||(22459956-22459984)
[»] chr7 (12 HSPs)
chr7 (223-496)||(7324134-7324421)
chr7 (229-566)||(8612632-8612987)
chr7 (86-179)||(18118537-18118631)
chr7 (86-127)||(676059-676100)
chr7 (89-179)||(30760293-30760384)
chr7 (229-291)||(12130049-12130110)
chr7 (82-179)||(20399996-20400094)
chr7 (82-124)||(26826072-26826114)
chr7 (263-300)||(11070058-11070095)
chr7 (78-124)||(47799929-47799975)
chr7 (266-294)||(22980575-22980603)
chr7 (266-294)||(22994226-22994254)
[»] chr3 (9 HSPs)
chr3 (77-179)||(32577466-32577568)
chr3 (82-189)||(33338204-33338311)
chr3 (77-188)||(48950545-48950657)
chr3 (223-294)||(10291143-10291213)
chr3 (229-289)||(11059308-11059367)
chr3 (85-124)||(28229438-28229477)
chr3 (83-169)||(49679304-49679391)
chr3 (86-124)||(33979934-33979972)
chr3 (266-294)||(18385321-18385349)
[»] chr2 (9 HSPs)
chr2 (82-178)||(41072982-41073079)
chr2 (229-296)||(24519886-24519952)
chr2 (77-180)||(373192-373296)
chr2 (113-188)||(17286648-17286723)
chr2 (136-169)||(374536-374569)
chr2 (83-124)||(23459880-23459921)
chr2 (82-169)||(28716572-28716656)
chr2 (92-169)||(2358434-2358513)
chr2 (266-294)||(32131284-32131312)
[»] chr8 (9 HSPs)
chr8 (95-179)||(13035090-13035174)
chr8 (82-184)||(15901389-15901493)
chr8 (136-184)||(29916322-29916370)
chr8 (264-296)||(42614540-42614572)
chr8 (77-127)||(24557429-24557479)
chr8 (78-124)||(26749577-26749623)
chr8 (82-124)||(34612564-34612606)
chr8 (223-291)||(13220757-13220824)
chr8 (136-168)||(33709154-33709186)
[»] chr5 (11 HSPs)
chr5 (82-169)||(14733510-14733597)
chr5 (82-179)||(43222070-43222168)
chr5 (77-167)||(35650274-35650365)
chr5 (223-296)||(20495047-20495119)
chr5 (77-172)||(2582385-2582481)
chr5 (77-128)||(9465739-9465790)
chr5 (223-300)||(24837061-24837138)
chr5 (84-127)||(3440834-3440877)
chr5 (77-188)||(38283714-38283824)
chr5 (77-127)||(9124954-9125004)
chr5 (266-294)||(22128276-22128304)
[»] scaffold0417 (1 HSPs)
scaffold0417 (218-277)||(5598-5657)
[»] chr1 (15 HSPs)
chr1 (82-127)||(24413315-24413360)
chr1 (229-294)||(45396934-45396998)
chr1 (82-124)||(26768895-26768937)
chr1 (106-188)||(42720586-42720668)
chr1 (231-296)||(10758937-10759001)
chr1 (79-124)||(49943999-49944044)
chr1 (229-291)||(15736157-15736218)
chr1 (110-179)||(22536737-22536807)
chr1 (140-170)||(42720859-42720889)
chr1 (86-127)||(32887817-32887858)
chr1 (88-188)||(36700860-36700961)
chr1 (88-188)||(36716964-36717065)
chr1 (266-294)||(21345490-21345518)
chr1 (266-294)||(39199303-39199331)
chr1 (266-294)||(47399230-47399258)
[»] scaffold0286 (1 HSPs)
scaffold0286 (88-131)||(16839-16882)
[»] chr4 (4 HSPs)
chr4 (82-120)||(4404294-4404332)
chr4 (82-124)||(17080813-17080855)
chr4 (83-124)||(42010117-42010158)
chr4 (266-294)||(16598768-16598796)
[»] scaffold0020 (1 HSPs)
scaffold0020 (223-296)||(122702-122774)
[»] scaffold0454 (1 HSPs)
scaffold0454 (266-294)||(13910-13938)
[»] scaffold0221 (1 HSPs)
scaffold0221 (266-294)||(10970-10998)


Alignment Details
Target: chr6 (Bit Score: 448; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 566
Target Start/End: Complemental strand, 27096110 - 27095561
Alignment:
Q  18 gtttaaacaaattatccttgatcaaaatcccattgttcattaagaaaataaagcatgtcggtgatgggtcctatcattaaatgagtctcaccatcattaa 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27096110 gtttaaacaaattatccttgatcaaaatcctattgttcattaagaaaataaagcatgtcggtgatgggtcctatcattaaatgagtctcaccatcattaa 27096011  T
Q  118 ttattttcaaaaaatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaatcaagaggattgtatctcattttacacttgccttaaaag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27096010 ttattttcaaaaaatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaatcgagaggattgtatctcattttacacttgccttaaaag 27095911  T
Q  218 gtttgttttttataaggcaaaaagtaggttagacatcaaggagcgccagaaacatcccaactaggttggcacccaactgaaaccgcctactccatatata 317  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  27095910 gtttgttttttataaggcaaaaagtaggttaggcatcaaggagcgccagaaacatcctaactaggttgacacccaactgaaaccgcctactccatatata 27095811  T
Q  318 ttatt-nnnnnnnnnnnnnntatatatacaagagagggggctatgccaaaaccctcataaaaagttgcataaaacggaaagaaacaacataaattctaag 416  Q
    |||||               |||||||||||||| |||||||| ||||||||||||| |||||| |||| ||||||||||||| ||||||||||||||||    
T  27095810 ttattaaaaacacggaaaaatatatatacaagagggggggctaggccaaaaccctcagaaaaaggtgcagaaaacggaaagaaccaacataaattctaag 27095711  T
Q  417 gaaaacgatagttaggcaagctattcatgtccctcaagaaatctaaagacaaaaaagacggcattgtgtcaaaccaaacagagcatataccctctcagta 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27095710 gaaaacgatagttaggcaagctattcatgtccctcaagaaatctaaagacaaaaaagacggcattgtgtcaaaccaaacagagcatataccctctcagta 27095611  T
Q  517 aatatgtgaacatcttcatttgggaagtgacgggggaggacccttagaac 566  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||    
T  27095610 aatatgtgaacatcttcatttgggaagtgacgggagcggacccttagaac 27095561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 290
Target Start/End: Complemental strand, 15081726 - 15081654
Alignment:
Q  218 gtttgttttttataaggcaaaaagtaggttagacatcaaggagcgccagaaacatcccaactaggttggcacc 290  Q
    |||| ||||||||||||||| ||||||||||||||||||||| | | |||||||||||||||| |||| ||||    
T  15081726 gttttttttttataaggcaagaagtaggttagacatcaaggaacactagaaacatcccaactaagttgacacc 15081654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 11070799 - 11070729
Alignment:
Q  229 ataaggcaaaaagtaggttagacatcaaggagcgccagaaacatcccaactaggttggcacccaactgaaac 300  Q
    ||||||||| |||||||| |||||||||||||| | ||| ||||||||||||||||||||| | ||||||||    
T  11070799 ataaggcaagaagtaggtgagacatcaaggagcac-agagacatcccaactaggttggcactccactgaaac 11070729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 19247402 - 19247349
Alignment:
Q  223 ttttttataaggcaaaaagtaggttagacatcaaggagcgccagaaacatcccaac 278  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||||||||| ||||    
T  19247402 ttttttataaggcaaa--gtaggttaggcatcaaggagcgccagaaacatctcaac 19247349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 2165527 - 2165570
Alignment:
Q  88 ctatcattaaatgagtctcaccatcattaattattttcaaaaaa 131  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||    
T  2165527 ctatcattaaatgagtctcactatcattaattatttttaaaaaa 2165570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 2177160 - 2177203
Alignment:
Q  88 ctatcattaaatgagtctcaccatcattaattattttcaaaaaa 131  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||    
T  2177160 ctatcattaaatgagtctcactatcattaattatttttaaaaaa 2177203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 32254059 - 32254148
Alignment:
Q  77 ggtgatgggtcctatcattaaatgagtctcaccatcattaattattttcaaaaaatttatgtttttatctctctaaatgaaagaaatggag 167  Q
    |||| |||||||||||||||| |||||| ||| |||||||||||||||   |   |||||||||||||||||||||||  | |||||||||    
T  32254059 ggtggtgggtcctatcattaagtgagtcccactatcattaattatttt-ttattttttatgtttttatctctctaaattgaggaaatggag 32254148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 2614472 - 2614505
Alignment:
Q  91 tcattaaatgagtctcaccatcattaattatttt 124  Q
    |||||||||||||| |||||||||||||||||||    
T  2614472 tcattaaatgagtcacaccatcattaattatttt 2614505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 17269212 - 17269245
Alignment:
Q  91 tcattaaatgagtctcaccatcattaattatttt 124  Q
    |||||||||||||||||| |||||||||||||||    
T  17269212 tcattaaatgagtctcactatcattaattatttt 17269245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 3924723 - 3924655
Alignment:
Q  86 tcctatcattaaatgagtctcaccatcattaattattttcaaaaaatttatgtttttatctctctaaat 154  Q
    |||||||| |||||||||  ||  || |||||||||||| |||||||||| || ||||||||| |||||    
T  3924723 tcctatcactaaatgagttacaatattattaattattttaaaaaaatttacgtctttatctctttaaat 3924655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 294
Target Start/End: Original strand, 21709311 - 21709339
Alignment:
Q  266 gaaacatcccaactaggttggcacccaac 294  Q
    |||||||||||||||||||||||||||||    
T  21709311 gaaacatcccaactaggttggcacccaac 21709339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 294
Target Start/End: Complemental strand, 22459984 - 22459956
Alignment:
Q  266 gaaacatcccaactaggttggcacccaac 294  Q
    |||||||||||||||||||||||||||||    
T  22459984 gaaacatcccaactaggttggcacccaac 22459956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 8e-41; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 223 - 496
Target Start/End: Complemental strand, 7324421 - 7324134
Alignment:
Q  223 ttttttataaggcaaaaagtaggttagacatcaaggagcgccagaaacatcccaactaggttggcacccaactgaa-------------accgcctactc 309  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||  |             |||||||||||    
T  7324421 ttttttataaggcaaaaagtaggttaggcatcaaggagtgccagaaacatcccaactaggttggcatccaactagagctcccatcctctaccgcctactc 7324322  T
Q  310 catatatattattnnnnnnnnnnnnnn-tatatatacaagagagggggctatgccaaaaccctcataaaaagttgcataaaacggaaagaaacaacataa 408  Q
    |||||||||||||               |||||||| ||||| |||| ||| ||||||||||||| ||| || ||||  |||| ||||||||||||  ||    
T  7324321 catatatattattataaaaagggaaaaatatatataaaagaggggggactaggccaaaaccctcaaaaagagatgcaggaaacagaaagaaacaacggaa 7324222  T
Q  409 attctaaggaaaacgatagttaggcaagctattcatgtccctcaagaaatctaaagacaaaaaagacggcattgtgtcaaaccaaaca 496  Q
    || ||| ||||| ||||||||||| |||  |||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||    
T  7324221 atcctagggaaagcgatagttaggaaagaaattcatatccctaaagaaatctaaagacaaaaaggacggaattgtgtcaaaccaaaca 7324134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 229 - 566
Target Start/End: Original strand, 8612632 - 8612987
Alignment:
Q  229 ataaggcaaaaagtaggttagacatcaaggagcgccagaaacatcccaactaggttggcacccaactgaa-------------accgcctactccatata 315  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||             ||||| |||||||||||    
T  8612632 ataaggcaagaagtaggttaggcatcaaggagcgccagaaacatcccaactaggttgacacccaaccgaagctcctatcctctaccgcttactccatata 8612731  T
Q  316 tattattnnnnnnnnnnnnnn-tatatatacaagagagggggctatgccaaaaccctcataaaaagttgcataaaacg------gaaagaaacaacataa 408  Q
    |||||||               |||||||||||||| ||   ||| |||||||||||||||||||| |||| ||||||      |||||| |||||  ||    
T  8612732 tattattaaaaaagggaaaaaatatatatacaagagtggaa-ctaggccaaaaccctcataaaaagatgcagaaaacgaaaacagaaagatacaacgaaa 8612830  T
Q  409 attctaaggaaaacgatagttaggcaagctattcatgtccctcaagaaatctaaagacaaaaaagacggcattgtgtcaaaccaaacagagcatataccc 508  Q
    |||| |||| | ||||||| |||||||| || || | ||||| ||||||||||||||  ||||| |  |||| ||||||||| ||| ||||||  |||||    
T  8612831 attc-aagggagacgatagataggcaagttaatcctatccctaaagaaatctaaagaagaaaaatattgcatcgtgtcaaacaaaatagagcagttaccc 8612929  T
Q  509 tctcagtaaatatgtgaacatcttcatttgggaagtgacgggggaggacccttagaac 566  Q
    ||||  |||||||||||||||| |||||||||| |||||||||| | |||||||||||    
T  8612930 tctcgataaatatgtgaacatcatcatttgggaggtgacgggggcgaacccttagaac 8612987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 86 - 179
Target Start/End: Original strand, 18118537 - 18118631
Alignment:
Q  86 tcctatcattaaatgagtctcaccatcattaattattttcaa-aaaatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaat 179  Q
    ||||||||||||||||||| |||||||||||||||||||||| |   ||||| | ||||||| | |||||  ||||||||||||||| |||||||    
T  18118537 tcctatcattaaatgagtcacaccatcattaattattttcaagattttttatatctttatctatttaaatagaagaaatggagaataatttaaat 18118631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 676059 - 676100
Alignment:
Q  86 tcctatcattaaatgagtctcaccatcattaattattttcaa 127  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  676059 tcctatcattaaatgagtctcaccatcattaattattttcaa 676100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 179
Target Start/End: Original strand, 30760293 - 30760384
Alignment:
Q  89 tatcattaaatgagtctcaccatcattaattattttcaa-aaaatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaat 179  Q
    ||||||| |||||||  ||||||||||||||||||| || |   ||||||| |||||||||  ||||||||||||||||||| |||||||||    
T  30760293 tatcattgaatgagttgcaccatcattaattatttttaagattttttatgtctttatctctacaaatgaaagaaatggagaagagtttaaat 30760384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 12130110 - 12130049
Alignment:
Q  229 ataaggcaaaaagtaggttagacatcaaggagcgccagaaacatcccaactaggttggcaccc 291  Q
    ||||||||| ||| ||||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  12130110 ataaggcaagaagaaggttagacatcaaggagc-ccagagacatcccaactaggttagcaccc 12130049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 179
Target Start/End: Complemental strand, 20400094 - 20399996
Alignment:
Q  82 tgggtcctatcattaaatgagtctcaccatcattaattattttcaa-aaaatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaat 179  Q
    |||||| |||||||||||||||| ||| ||||||||||||||| || |   ||||||| ||||||| | |||||  |||||||||| |||| |||||||    
T  20400094 tgggtcttatcattaaatgagtcacacgatcattaattatttttaagattttttatgtctttatctgtttaaatagaagaaatggaaaataatttaaat 20399996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 26826072 - 26826114
Alignment:
Q  82 tgggtcctatcattaaatgagtctcaccatcattaattatttt 124  Q
    |||||||||||||||||||||| | ||||||||||||||||||    
T  26826072 tgggtcctatcattaaatgagtttaaccatcattaattatttt 26826114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 11070095 - 11070058
Alignment:
Q  263 ccagaaacatcccaactaggttggcacccaactgaaac 300  Q
    |||||||||||||||||||||||||| |||||||||||    
T  11070095 ccagaaacatcccaactaggttggcatccaactgaaac 11070058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 47799929 - 47799975
Alignment:
Q  78 gtgatgggtcctatcattaaatgagtctcaccatcattaattatttt 124  Q
    |||||||||||||||| ||| || ||| |||||||||||||||||||    
T  47799929 gtgatgggtcctatcactaagtgggtcccaccatcattaattatttt 47799975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 294
Target Start/End: Original strand, 22980575 - 22980603
Alignment:
Q  266 gaaacatcccaactaggttggcacccaac 294  Q
    |||||||||||||||||||||||||||||    
T  22980575 gaaacatcccaactaggttggcacccaac 22980603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 294
Target Start/End: Original strand, 22994226 - 22994254
Alignment:
Q  266 gaaacatcccaactaggttggcacccaac 294  Q
    |||||||||||||||||||||||||||||    
T  22994226 gaaacatcccaactaggttggcacccaac 22994254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 32577568 - 32577466
Alignment:
Q  77 ggtgatgggtcctatcattaaatgagtctcaccatcattaattattttcaaaaaatttatgtttttatctctctaaatgaaagaaatggagaatagttta 176  Q
    |||| ||||||||||||||||||||||  |||||||||||||| ||||||| |  ||| ||| |||||||||| ||||  ||||||||||||| ||||||    
T  32577568 ggtggtgggtcctatcattaaatgagttccaccatcattaatttttttcaagatttttgtgtctttatctctccaaatagaagaaatggagaagagttta 32577469  T
Q  177 aat 179  Q
    |||    
T  32577468 aat 32577466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 82 - 189
Target Start/End: Original strand, 33338204 - 33338311
Alignment:
Q  82 tgggtcctatcattaaatgagtctcaccatcattaattattttcaaaaaatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaatca 181  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||| |  ||| ||| |||||||||  ||| | |||||||||| || |||||||||      
T  33338204 tgggtcctatcattaaatgagtctcatcatcattaactattttcaagatttttgtgtctttatctcttcaaacggaagaaatggaaaagagtttaaatgg 33338303  T
Q  182 agaggatt 189  Q
    ||||||||    
T  33338304 agaggatt 33338311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 48950657 - 48950545
Alignment:
Q  77 ggtgatgggtcctatcattaaatgagtctcaccatcattaattattttcaa-aaaatttatgtttttatctctctaaatgaaagaaatggagaatagttt 175  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||| |   ||| | ||||||||| | |||||| | ||||| ||||| |||||    
T  48950657 ggtggtggatcctatcattaaatgagtctcaccatcattaattattttcaagattttttgtatttttatctttgtaaatggatgaaatagagaagagttt 48950558  T
Q  176 aaatcaagaggat 188  Q
    ||||  |||||||    
T  48950557 aaatggagaggat 48950545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 10291213 - 10291143
Alignment:
Q  223 ttttttataaggcaaaaagtaggttagacatcaaggagcgccagaaacatcccaactaggttggcacccaac 294  Q
    ||||||||||| ||| || |||||||||||| |||||| ||| |||||||| ||||||||||||||||||||    
T  10291213 ttttttataagtcaagaaataggttagacattaaggag-gccggaaacatctcaactaggttggcacccaac 10291143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 11059308 - 11059367
Alignment:
Q  229 ataaggcaaaaagtaggttagacatcaaggagcgccagaaacatcccaactaggttggcac 289  Q
    |||| |||| |||||||||||| |||||||||| ||||| |||||||||||||||||||||    
T  11059308 ataaagcaagaagtaggttagatatcaaggagc-ccagagacatcccaactaggttggcac 11059367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 28229438 - 28229477
Alignment:
Q  85 gtcctatcattaaatgagtctcaccatcattaattatttt 124  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  28229438 gtcctatcattaaatgagtctcaccatcattaattttttt 28229477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 49679304 - 49679391
Alignment:
Q  83 gggtcctatcattaaatgagtctcaccatcattaattattttcaaaaaatt-tatgtttttatctctctaaatgaaagaaatggagaa 169  Q
    ||||||||||| |||||| ||| |||||||||||||||||||  |    || | ||| ||||||||||||||||||| ||||||||||    
T  49679304 gggtcctatcactaaatgggtcccaccatcattaattattttttactttttatgtgtctttatctctctaaatgaaacaaatggagaa 49679391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 124
Target Start/End: Complemental strand, 33979972 - 33979934
Alignment:
Q  86 tcctatcattaaatgagtctcaccatcattaattatttt 124  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  33979972 tcctatcattaaataagtctcactatcattaattatttt 33979934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 294
Target Start/End: Original strand, 18385321 - 18385349
Alignment:
Q  266 gaaacatcccaactaggttggcacccaac 294  Q
    |||||||||||||||||||||||||||||    
T  18385321 gaaacatcccaactaggttggcacccaac 18385349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 82 - 178
Target Start/End: Original strand, 41072982 - 41073079
Alignment:
Q  82 tgggtcctatcattaaatgagtctcaccatcattaattattttcaa-aaaatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaa 178  Q
    |||||||||||||||||||  |||||| ||||||||||||||| || |   ||| ||| |||||||||||||||||||||||||||||| || |||||    
T  41072982 tgggtcctatcattaaatggatctcacaatcattaattatttttaagattttttgtgtctttatctctctaaatgaaagaaatggagaagagattaaa 41073079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 24519952 - 24519886
Alignment:
Q  229 ataaggcaaaaagtaggttagacatcaaggagcgccagaaacatcccaactaggttggcacccaactg 296  Q
    |||||||||  || ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  24519952 ataaggcaaggagaaggttagacatcaaggagc-ccagagacatcccaactaggttggcaccccactg 24519886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 373192 - 373296
Alignment:
Q  77 ggtgatgggtcctatcattaaatgagtctcaccatcattaattattttcaaaaaattta-tgtttttatctctctaaatgaaagaaatggagaatagttt 175  Q
    |||| |||||| ||| ||||||||| || |||||| |||||||||||| || |  |||  | | ||||||| |||||||| ||||||||||||| |||||    
T  373192 ggtggtgggtcatattattaaatgaatcccaccattattaattatttttaagattttttgtatctttatctttctaaatggaagaaatggagaagagttt 373291  T
Q  176 aaatc 180  Q
    |||||    
T  373292 aaatc 373296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 17286648 - 17286723
Alignment:
Q  113 attaattattttcaaaaaatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaatcaagaggat 188  Q
    ||||||||||| ||||| |||| ||| ||||||| |  ||||| ||||||||||||| |||||||||  |||||||    
T  17286648 attaattatttacaaaatatttgtgtatttatcttttcaaatggaagaaatggagaagagtttaaatggagaggat 17286723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 374536 - 374569
Alignment:
Q  136 tgtttttatctctctaaatgaaagaaatggagaa 169  Q
    ||||||||||||||||||||||||||| ||||||    
T  374536 tgtttttatctctctaaatgaaagaaagggagaa 374569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 23459880 - 23459921
Alignment:
Q  83 gggtcctatcattaaatgagtctcaccatcattaattatttt 124  Q
    ||||||||||| |||||| ||| |||||||||||||||||||    
T  23459880 gggtcctatcactaaatgggtcccaccatcattaattatttt 23459921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 169
Target Start/End: Original strand, 28716572 - 28716656
Alignment:
Q  82 tgggtcctatcattaaatgagtctcaccatcattaattattttcaaaaaatttatgtttttatctctctaaatgaaagaaatggagaa 169  Q
    ||||| |||||||||||||  ||  || ||||||||||||||| ||||   || ||| ||| ||||| ||||||||||||||||||||    
T  28716572 tgggttctatcattaaatggatcctactatcattaattatttttaaaa---ttgtgtctttctctctttaaatgaaagaaatggagaa 28716656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 2358434 - 2358513
Alignment:
Q  92 cattaaatgagtctcaccatcattaattattttcaaaaaattta--tgtttttatctctctaaatgaaagaaatggagaa 169  Q
    ||||||||||| || |||||||||||||||||| | || |||||  |||||||||||||  |||| ||| ||||| ||||    
T  2358434 cattaaatgaggctaaccatcattaattatttttataatatttatgtgtttttatctcttcaaataaaacaaatgaagaa 2358513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 294
Target Start/End: Original strand, 32131284 - 32131312
Alignment:
Q  266 gaaacatcccaactaggttggcacccaac 294  Q
    |||||||||||||||||||||||||||||    
T  32131284 gaaacatcccaactaggttggcacccaac 32131312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 13035174 - 13035090
Alignment:
Q  95 taaatgagtctcaccatcattaattattttcaaaaaatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaat 179  Q
    ||||||| ||||||||||||||||||||||||| |  ||| ||| ||||||| |||||||  |||||||||| ||||||||||||    
T  13035174 taaatgaatctcaccatcattaattattttcaagatttttgtgtctttatctttctaaatagaagaaatggaaaatagtttaaat 13035090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 15901493 - 15901389
Alignment:
Q  82 tgggtcctatcattaaatgagtctcaccatcattaattattttcaa--aaaatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaat 179  Q
    |||||||||| |||||||| |||| || ||||||||||||||||||  |||| || |||||||||||||| || |  |||||||| |||| || ||||||    
T  15901493 tgggtcctattattaaatgggtcttactatcattaattattttcaaaaaaaaattgtgtttttatctctcaaagtagaagaaatgaagaagagattaaat 15901394  T
Q  180 caaga 184  Q
     ||||    
T  15901393 gaaga 15901389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 29916370 - 29916322
Alignment:
Q  136 tgtttttatctctctaaatgaaagaaatggagaatagtttaaatcaaga 184  Q
    ||||||||||||||| ||||||||||||| |||| ||||||||| ||||    
T  29916370 tgtttttatctctctgaatgaaagaaatgaagaagagtttaaatgaaga 29916322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 42614572 - 42614540
Alignment:
Q  264 cagaaacatcccaactaggttggcacccaactg 296  Q
    |||||||||||||||||||||||||||||||||    
T  42614572 cagaaacatcccaactaggttggcacccaactg 42614540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 24557479 - 24557429
Alignment:
Q  77 ggtgatgggtcctatcattaaatgagtctcaccatcattaattattttcaa 127  Q
    ||||||||||| |||||||||||  |||| || ||||||||||||||||||    
T  24557479 ggtgatgggtcatatcattaaatacgtctgactatcattaattattttcaa 24557429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 26749577 - 26749623
Alignment:
Q  78 gtgatgggtcctatcattaaatgagtctcaccatcattaattatttt 124  Q
    |||||||||||||||| ||| || ||| |||||||||||||||||||    
T  26749577 gtgatgggtcctatcactaagtgggtcccaccatcattaattatttt 26749623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 34612606 - 34612564
Alignment:
Q  82 tgggtcctatcattaaatgagtctcaccatcattaattatttt 124  Q
    |||||||||||| ||| || |||||||||||||||||||||||    
T  34612606 tgggtcctatcactaagtgggtctcaccatcattaattatttt 34612564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 13220824 - 13220757
Alignment:
Q  223 ttttttataaggcaaaaagtaggttagacatcaaggagcgccagaaacatcccaactaggttggcaccc 291  Q
    ||||| ||||||||| ||||||  || |||||||||||| ||||| ||||| ||||||| |||||||||    
T  13220824 tttttgataaggcaagaagtagagtatacatcaaggagc-ccagagacatcacaactagattggcaccc 13220757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 33709186 - 33709154
Alignment:
Q  136 tgtttttatctctctaaatgaaagaaatggaga 168  Q
    |||||||||||||| ||||||||||||||||||    
T  33709186 tgtttttatctctccaaatgaaagaaatggaga 33709154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 82 - 169
Target Start/End: Complemental strand, 14733597 - 14733510
Alignment:
Q  82 tgggtcctatcattaaatgagtctcaccatcattaattattttcaaaaaatttatgtttttatctctctaaatgaaagaaatggagaa 169  Q
    |||||| ||| |||||||||||| ||||||| ||||||||||  |||||| || ||| ||||||| |||||||| |||||||||||||    
T  14733597 tgggtcttattattaaatgagtcccaccatcgttaattatttaaaaaaaaattgtgtctttatctttctaaatggaagaaatggagaa 14733510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 82 - 179
Target Start/End: Complemental strand, 43222168 - 43222070
Alignment:
Q  82 tgggtcctatcattaaatgagtctcaccatcattaattattttcaaaaaatt-tatgtttttatctctctaaatgaaagaaatggagaatagtttaaat 179  Q
    |||||| ||||||||||||  || ||||||||||||||||||||||||  || | ||| ||||||||||| ||||||| |||||||| | |||||||||    
T  43222168 tgggtcttatcattaaatggatcccaccatcattaattattttcaaaattttatgtgtctttatctctctgaatgaaataaatggagcagagtttaaat 43222070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 167
Target Start/End: Complemental strand, 35650365 - 35650274
Alignment:
Q  77 ggtgatgggtcctatcattaaatgagtctcaccatcattaattattttcaaa-aaatttatgtttttatctctctaaatgaaagaaatggag 167  Q
    |||| |||||||||| ||||||||| | |||||||||||||||||||| |||    ||||||||| |||||||  |||||||||||||||||    
T  35650365 ggtggtgggtcctattattaaatgaatttcaccatcattaattatttttaaatttttttatgtttatatctcttcaaatgaaagaaatggag 35650274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 296
Target Start/End: Complemental strand, 20495119 - 20495047
Alignment:
Q  223 ttttttataaggcaaaaagtaggttagacatcaaggagcgccagaaacatcccaactaggttggcacccaactg 296  Q
    |||||||||||||||||||||| | ||||||||||||||   ||| |||||| |||||||||||||||| ||||    
T  20495119 ttttttataaggcaaaaagtagatgagacatcaaggagc-ttagagacatcctaactaggttggcaccccactg 20495047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 2582385 - 2582481
Alignment:
Q  77 ggtgatgggtcctatcattaaatgagtctcaccatcattaattattttcaa-aaaatttatgtttttatctctctaaatgaaagaaatggagaatag 172  Q
    |||| |||||||||||||||||| | ||||| |||||||||||||||| || |   ||| ||| | |||||| | ||||||||||||||||||||||    
T  2582385 ggtggtgggtcctatcattaaataaatctcatcatcattaattatttttaagattttttgtgtctatatctccccaaatgaaagaaatggagaatag 2582481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 9465790 - 9465739
Alignment:
Q  77 ggtgatgggtcctatcattaaatgagtctcaccatcattaattattttcaaa 128  Q
    |||| ||| |||||||||||||||| | ||||||||||||||||||||||||    
T  9465790 ggtggtggatcctatcattaaatgaatttcaccatcattaattattttcaaa 9465739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 24837061 - 24837138
Alignment:
Q  223 ttttttataaggcaaaaagtaggttagacatcaaggagcgccagaaacatcccaactaggttggcacccaactgaaac 300  Q
    ||||||||||| ||| || |||||| |||||| || ||   |||||||||| |||||||||||||||| |||||||||    
T  24837061 ttttttataagccaagaaataggttggacatcgagaagaaacagaaacatctcaactaggttggcacctaactgaaac 24837138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 3440877 - 3440834
Alignment:
Q  84 ggtcctatcattaaatgagtctcaccatcattaattattttcaa 127  Q
    |||||||||||||||| |||||||  ||||||||||||||||||    
T  3440877 ggtcctatcattaaataagtctcattatcattaattattttcaa 3440834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 38283824 - 38283714
Alignment:
Q  77 ggtgatgggtcctatcattaaatgagtctcaccatcattaattattttcaaaaaatttatgtttttatctctctaaatgaaagaaatggagaatagttta 176  Q
    |||| |||||| ||||||||||| ||||| || |||||||||||||||  || ||||| ||| | ||||||||||||||  |||||| || || | ||||    
T  38283824 ggtggtgggtcatatcattaaataagtctgactatcattaattatttt-taagaatttgtgtctatatctctctaaatggtagaaatagataaaaattta 38283726  T
Q  177 aatcaagaggat 188  Q
    |||  |||||||    
T  38283725 aatggagaggat 38283714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 9124954 - 9125004
Alignment:
Q  77 ggtgatgggtcctatcattaaatgagtctcaccatcattaattattttcaa 127  Q
    |||| ||| |||||| ||||||| |||||||| ||||||||||||||||||    
T  9124954 ggtggtggatcctataattaaataagtctcacaatcattaattattttcaa 9125004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 294
Target Start/End: Complemental strand, 22128304 - 22128276
Alignment:
Q  266 gaaacatcccaactaggttggcacccaac 294  Q
    |||||||||||||||||||||||||||||    
T  22128304 gaaacatcccaactaggttggcacccaac 22128276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 5657 - 5598
Alignment:
Q  218 gtttgttttttataaggcaaaaagtaggttagacatcaaggagcgccagaaacatcccaa 277  Q
    |||| ||||||||||||||| ||||||||| ||||||||||| |||| ||||||||||||    
T  5657 gttttttttttataaggcaagaagtaggttggacatcaaggaacgccggaaacatcccaa 5598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 24413315 - 24413360
Alignment:
Q  82 tgggtcctatcattaaatgagtctcaccatcattaattattttcaa 127  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  24413315 tgggtcctatcattaaatgggtcccaccatcattaattattttcaa 24413360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 45396934 - 45396998
Alignment:
Q  229 ataaggcaaaaagtaggttagacatcaaggagcgccagaaacatcccaactaggttggcacccaac 294  Q
    |||| |||| || |||||||| |||||||||| |||||||| ||||||||||||||||||||||||    
T  45396934 ataaagcaagaaataggttaggcatcaaggag-gccagaaatatcccaactaggttggcacccaac 45396998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 26768937 - 26768895
Alignment:
Q  82 tgggtcctatcattaaatgagtctcaccatcattaattatttt 124  Q
    ||||| |||||||||| ||||||||||||||||||||||||||    
T  26768937 tgggttctatcattaagtgagtctcaccatcattaattatttt 26768895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 42720668 - 42720586
Alignment:
Q  106 caccatcattaattattttcaaaaaatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaatcaagaggat 188  Q
    |||||| ||||| |||||||||  | ||| ||| |||||||||||||||  ||||||| ||||| ||||||||| ||||||||    
T  42720668 caccattattaactattttcaagtattttttgtctttatctctctaaatagaagaaatagagaaaagtttaaatgaagaggat 42720586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 10758937 - 10759001
Alignment:
Q  231 aaggcaaaaagtaggttagacatcaaggagcgccagaaacatcccaactaggttggcacccaactg 296  Q
    ||||||| |||||||  || ||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  10758937 aaggcaagaagtaggggaggcatcaaggagc-ccagagacatcccaactaggttggcaccccactg 10759001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 49943999 - 49944044
Alignment:
Q  79 tgatgggtcctatcattaaatgagtctcaccatcattaattatttt 124  Q
    ||||||||||||| ||||||||||||  ||||||||||||||||||    
T  49943999 tgatgggtcctattattaaatgagtcctaccatcattaattatttt 49944044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 15736218 - 15736157
Alignment:
Q  229 ataaggcaaaaagtaggttagacatcaaggagcgccagaaacatcccaactaggttggcaccc 291  Q
    ||||||||| |||||| | |||||||||||||| ||||| ||||| ||| |||||||||||||    
T  15736218 ataaggcaagaagtagatgagacatcaaggagc-ccagagacatctcaattaggttggcaccc 15736157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 22536807 - 22536737
Alignment:
Q  110 atcattaattattttcaaaaaatt-tatgtttttatctctctaaatgaaagaaatggagaatagtttaaat 179  Q
    |||||||||||||||||||||| | | | | ||||||||| |||||| ||||||||||||| | |||||||    
T  22536807 atcattaattattttcaaaaaaatatgtctctttatctctttaaatggaagaaatggagaagactttaaat 22536737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 170
Target Start/End: Original strand, 42720859 - 42720889
Alignment:
Q  140 tttatctctctaaatgaaagaaatggagaat 170  Q
    |||||||||||||||||||||||||||||||    
T  42720859 tttatctctctaaatgaaagaaatggagaat 42720889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 32887817 - 32887858
Alignment:
Q  86 tcctatcattaaatgagtctcaccatcattaattattttcaa 127  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||    
T  32887817 tcctaccattaaatgggtcccaccatcattaattattttcaa 32887858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 36700860 - 36700961
Alignment:
Q  88 ctatcattaaatgagtctcaccatcattaattattttcaaaa-aatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaatcaagagg 186  Q
    ||||||||||||   | |||||||||||||||||||||||||   ||| ||| | |||||||| |||| |||||||| ||||| || ||||||  |||||    
T  36700860 ctatcattaaatagatttcaccatcattaattattttcaaaattttttgtgtctgtatctctccaaataaaagaaattgagaagaggttaaatggagagg 36700959  T
Q  187 at 188  Q
    ||    
T  36700960 at 36700961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 36716964 - 36717065
Alignment:
Q  88 ctatcattaaatgagtctcaccatcattaattattttcaaaa-aatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaatcaagagg 186  Q
    ||||||||||||   | |||||||||||||||||||||||||   ||| ||| | |||||||| |||| |||||||| ||||| || ||||||  |||||    
T  36716964 ctatcattaaatagatttcaccatcattaattattttcaaaattttttgtgtctgtatctctccaaataaaagaaattgagaagaggttaaatggagagg 36717063  T
Q  187 at 188  Q
    ||    
T  36717064 at 36717065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 294
Target Start/End: Original strand, 21345490 - 21345518
Alignment:
Q  266 gaaacatcccaactaggttggcacccaac 294  Q
    |||||||||||||||||||||||||||||    
T  21345490 gaaacatcccaactaggttggcacccaac 21345518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 294
Target Start/End: Complemental strand, 39199331 - 39199303
Alignment:
Q  266 gaaacatcccaactaggttggcacccaac 294  Q
    |||||||||||||||||||||||||||||    
T  39199331 gaaacatcccaactaggttggcacccaac 39199303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 294
Target Start/End: Original strand, 47399230 - 47399258
Alignment:
Q  266 gaaacatcccaactaggttggcacccaac 294  Q
    |||||||||||||||||||||||||||||    
T  47399230 gaaacatcccaactaggttggcacccaac 47399258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 16882 - 16839
Alignment:
Q  88 ctatcattaaatgagtctcaccatcattaattattttcaaaaaa 131  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||    
T  16882 ctatcattaaatgagtctcactatcattaattatttttaaaaaa 16839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 120
Target Start/End: Complemental strand, 4404332 - 4404294
Alignment:
Q  82 tgggtcctatcattaaatgagtctcaccatcattaatta 120  Q
    |||||||||||||||| || |||||||||||||||||||    
T  4404332 tgggtcctatcattaagtgtgtctcaccatcattaatta 4404294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 17080855 - 17080813
Alignment:
Q  82 tgggtcctatcattaaatgagtctcaccatcattaattatttt 124  Q
    ||||||||| |||| | ||||||||||||||||||||||||||    
T  17080855 tgggtcctaccattgagtgagtctcaccatcattaattatttt 17080813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 42010158 - 42010117
Alignment:
Q  83 gggtcctatcattaaatgagtctcaccatcattaattatttt 124  Q
    ||||||||||| |||||| ||| |||||||||||||||||||    
T  42010158 gggtcctatcactaaatgggtcccaccatcattaattatttt 42010117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 294
Target Start/End: Original strand, 16598768 - 16598796
Alignment:
Q  266 gaaacatcccaactaggttggcacccaac 294  Q
    |||||||||||||||||||||||||||||    
T  16598768 gaaacatcccaactaggttggcacccaac 16598796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 122702 - 122774
Alignment:
Q  223 ttttttataaggcaaaaagtaggttagacatcaaggagcgccagaaacatcccaactaggttggcacccaactg 296  Q
    ||||| ||||||||| ||| |||||||| |||||| ||  | ||| ||||||||||||||||||||||| ||||    
T  122702 tttttgataaggcaagaagaaggttagaaatcaagaagttc-agagacatcccaactaggttggcaccctactg 122774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 294
Target Start/End: Original strand, 13910 - 13938
Alignment:
Q  266 gaaacatcccaactaggttggcacccaac 294  Q
    |||||||||||||||||||||||||||||    
T  13910 gaaacatcccaactaggttggcacccaac 13938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 294
Target Start/End: Original strand, 10970 - 10998
Alignment:
Q  266 gaaacatcccaactaggttggcacccaac 294  Q
    |||||||||||||||||||||||||||||    
T  10970 gaaacatcccaactaggttggcacccaac 10998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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