View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7684_low_2 (Length: 468)

Name: NF7684_low_2
Description: NF7684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7684_low_2
NF7684_low_2
[»] chr6 (6 HSPs)
chr6 (14-454)||(413045-413478)
chr6 (139-211)||(5053724-5053796)
chr6 (157-212)||(5096031-5096086)
chr6 (151-202)||(30679603-30679654)
chr6 (162-217)||(32945440-32945495)
chr6 (139-212)||(28085573-28085646)
[»] chr5 (7 HSPs)
chr5 (222-385)||(7433085-7433242)
chr5 (265-384)||(11655375-11655495)
chr5 (395-454)||(11655715-11655775)
chr5 (157-216)||(12576890-12576949)
chr5 (18-59)||(7430726-7430767)
chr5 (139-212)||(38685164-38685237)
chr5 (140-212)||(7640520-7640592)
[»] chr4 (9 HSPs)
chr4 (139-210)||(25755515-25755586)
chr4 (151-217)||(29209199-29209265)
chr4 (157-217)||(47372843-47372903)
chr4 (166-217)||(55029013-55029064)
chr4 (139-213)||(20105530-20105604)
chr4 (139-212)||(1777029-1777102)
chr4 (164-217)||(7970418-7970471)
chr4 (139-212)||(37798048-37798121)
chr4 (157-213)||(12443291-12443347)
[»] chr7 (7 HSPs)
chr7 (139-213)||(34341407-34341481)
chr7 (139-212)||(28208340-28208413)
chr7 (139-212)||(37618142-37618215)
chr7 (157-217)||(22174192-22174252)
chr7 (157-213)||(26741924-26741980)
chr7 (157-217)||(28858237-28858297)
chr7 (140-212)||(45836495-45836567)
[»] chr3 (5 HSPs)
chr3 (150-212)||(54279217-54279279)
chr3 (157-217)||(21862771-21862831)
chr3 (173-217)||(55244470-55244514)
chr3 (139-212)||(7895892-7895965)
chr3 (157-217)||(42026566-42026626)
[»] chr2 (7 HSPs)
chr2 (138-212)||(8180977-8181051)
chr2 (139-212)||(13443920-13443993)
chr2 (162-217)||(8197576-8197631)
chr2 (162-217)||(8202336-8202391)
chr2 (162-201)||(26202945-26202984)
chr2 (159-217)||(32402692-32402750)
chr2 (139-213)||(33504420-33504494)
[»] chr1 (12 HSPs)
chr1 (163-217)||(10569107-10569161)
chr1 (139-212)||(9592931-9593004)
chr1 (161-217)||(6025797-6025853)
chr1 (157-217)||(38869074-38869134)
chr1 (174-217)||(40920576-40920619)
chr1 (139-212)||(25979243-25979316)
chr1 (139-212)||(34792361-34792434)
chr1 (139-212)||(52921277-52921350)
chr1 (162-210)||(2545134-2545182)
chr1 (165-217)||(7124333-7124385)
chr1 (162-214)||(27072522-27072574)
chr1 (153-217)||(52160269-52160333)
[»] chr8 (4 HSPs)
chr8 (139-215)||(12611691-12611767)
chr8 (157-217)||(23492226-23492286)
chr8 (139-212)||(25473415-25473488)
chr8 (157-213)||(38391923-38391979)
[»] scaffold0024 (1 HSPs)
scaffold0024 (139-212)||(82915-82988)


Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 14 - 454
Target Start/End: Complemental strand, 413478 - 413045
Alignment:
Q  14 cctgtgttcattacaaatgtccaaccaattccacaatgcattttcaatttctatcattacaacatgcaatttattcaatatcttggaaatttatagttga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  413478 cctgtgttcattacaaatgtccaaccaattccacaatgcattttcaatttctatcattacaacatgcaatttattcaatatcttggaaatttatagttga 413379  T
Q  114 agcttatgtagcagcaacattaatgaagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatatttc 213  Q
    ||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  413378 agcttatgtagcagcaacattaacgaaaccttattctattaagtgggatcggctacattgatcaaatgacactataatcttctatcatataccatatttc 413279  T
Q  214 tatcgttatagactgcacaaaacaatggcggaatatgaaggactggatactatactagtctattgagtaatatcagaattttccacatgagaaatgtcat 313  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||    
T  413278 tatcgt--tagactgcacaaaacaatggcggaatatgaaggactgg-----atactagtctattgagtaatatcagaattttccacatgagaaatgtcat 413186  T
Q  314 gaatacaaattattccaaatgagttagagaaatcaaagagacttgcttgaatcacgatgctcacatgtgaaaatataatgccaagaatagcctttctgct 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  413185 gaatacaaattattccaaatgagttagagaaatcaaagagacttgcttgaatcgcgatgctcacatgtgaaaatataatgccaagaatagcctttctgtt 413086  T
Q  414 tattttcaactcctcaaattataatgacataaatttaaaac 454  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  413085 tattttcaactcctcaaattataatgacataaatttaaaac 413045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 5053796 - 5053724
Alignment:
Q  139 aagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatatt 211  Q
    ||||||||| ||| |||||||| |||||||||||||||||| ||| | | |||  | ||||||||||||||||    
T  5053796 aagccttatcctactaaatggggtcggctacattgatcaaacgacgcaacaatgctttatcatataccatatt 5053724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 5096086 - 5096031
Alignment:
Q  157 tgggatcggctacattgatcaaatgacactataatcttctatcatataccatattt 212  Q
    ||||||||||||||| |||||||| || | ||||| |||||||||| |||||||||    
T  5096086 tgggatcggctacatagatcaaattacgccataatgttctatcataaaccatattt 5096031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 30679654 - 30679603
Alignment:
Q  151 attaaatgggatcggctacattgatcaaatgacactataatcttctatcata 202  Q
    ||||| ||||||||||||||| |||||||||||  |||||| ||||||||||    
T  30679654 attaagtgggatcggctacatagatcaaatgacgttataatgttctatcata 30679603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 32945495 - 32945440
Alignment:
Q  162 tcggctacattgatcaaatgacactataatcttctatcatataccatatttctatc 217  Q
    |||||||||| ||||||| ||||| ||||| ||||||||||||  |||||||||||    
T  32945495 tcggctacatggatcaaacgacaccataatgttctatcatataaaatatttctatc 32945440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 28085646 - 28085573
Alignment:
Q  139 aagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatattt 212  Q
    ||||||||| | | ||| |||| |||||||||| ||||||||||||| ||| | |||||||||| |||| ||||    
T  28085646 aagccttatcccactaagtggggtcggctacatggatcaaatgacaccatagtgttctatcatacaccaaattt 28085573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 7e-47; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 222 - 385
Target Start/End: Complemental strand, 7433242 - 7433085
Alignment:
Q  222 tagactgcacaaaacaatggcggaatatgaaggactggatactatactagtctattgagtaatatcagaattttccacatgagaaatgtcatgaatacaa 321  Q
    ||||| || ||||||| |||| |||||||| |||||||||||||     ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7433242 tagaccgcgcaaaacagtggcagaatatgagggactggatacta-----gtctattgagtaatatcagaattttccacatgagaaatgtcctgaatacaa 7433148  T
Q  322 attattccaaatgagttagagaaatcaaagagacttgcttgaatcacgatgctcacatgtgaaa 385  Q
    ||| |||||||||||||||||||||||||||||||  ||| |||| ||||||||||||||||||    
T  7433147 attgttccaaatgagttagagaaatcaaagagactgactt-aatcgcgatgctcacatgtgaaa 7433085  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 384
Target Start/End: Original strand, 11655375 - 11655495
Alignment:
Q  265 atactagtctattgagtaatatcagaattttccacatgagaaatgtcatgaatacaaattattccaaatgagttaga-gaaatcaaagagacttgcttga 363  Q
    ||||||||||||| ||||||||||  || | || ||| ||||||||| |||||||| ||| ||| |||||||||| | |||||||||| ||||||||| |    
T  11655375 atactagtctattaagtaatatcaatatctcccgcataagaaatgtcctgaatacagattgttcaaaatgagttaaaggaaatcaaagcgacttgcttta 11655474  T
Q  364 atcacgatgctcacatgtgaa 384  Q
    ||||| ||||| | |||||||    
T  11655475 atcacaatgctaagatgtgaa 11655495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 454
Target Start/End: Original strand, 11655715 - 11655775
Alignment:
Q  395 caagaatagcctttctgcttattttcaactcctcaaattataatgacataaa-tttaaaac 454  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||    
T  11655715 caagaatagcctttctgcttattttcaactcctgaaattacaatgacataaactttaaaac 11655775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 12576890 - 12576949
Alignment:
Q  157 tgggatcggctacattgatcaaatgacactataatcttctatcatataccatatttctat 216  Q
    |||| ||||||||||  || ||||||||| |||||  |||||||||||||||||||||||    
T  12576890 tggggtcggctacatgtataaaatgacaccataatggtctatcatataccatatttctat 12576949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 7430726 - 7430767
Alignment:
Q  18 tgttcattacaaatgtccaaccaattccacaatgcattttca 59  Q
    ||||||||||||||||||| ||||||||||||  ||||||||    
T  7430726 tgttcattacaaatgtccagccaattccacaagacattttca 7430767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 38685237 - 38685164
Alignment:
Q  139 aagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatattt 212  Q
    ||||||||| | | ||| |||| |||||||||| ||||||||||| | ||| | |||||||||| |||||||||    
T  38685237 aagccttatcccactaagtggggtcggctacatggatcaaatgacgccatattgttctatcataaaccatattt 38685164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 7640520 - 7640592
Alignment:
Q  140 agccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatattt 212  Q
    |||||||||| | ||| ||||||||||||||| |||||||| || |  || | |||||||||| |||||||||    
T  7640520 agccttattccactaagtgggatcggctacatggatcaaattacgccgtagtgttctatcataaaccatattt 7640592  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 25755586 - 25755515
Alignment:
Q  139 aagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatat 210  Q
    ||||||||| | |||||||||||||| || ||| ||||||||||||||||||| |||||| ||||| |||||    
T  25755586 aagccttatcccattaaatgggatcgacttcatggatcaaatgacactataatgttctatgatatatcatat 25755515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 29209199 - 29209265
Alignment:
Q  151 attaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatatttctatc 217  Q
    ||||| |||| ||||||||||||||||||  || | |||||  ||||||||||||||||||||||||    
T  29209199 attaagtggggtcggctacattgatcaaacaacgccataatgctctatcatataccatatttctatc 29209265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 47372903 - 47372843
Alignment:
Q  157 tgggatcggctacattgatcaaatgacactataatcttctatcatataccatatttctatc 217  Q
    |||||| |||||||| ||||||| ||| | ||||| |||||| ||||||||||||||||||    
T  47372903 tgggatgggctacatggatcaaacgactccataatgttctataatataccatatttctatc 47372843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 55029064 - 55029013
Alignment:
Q  166 ctacattgatcaaatgacactataatcttctatcatataccatatttctatc 217  Q
    ||||||| |||||||||| | ||||| |||||||||||| ||||||||||||    
T  55029064 ctacattaatcaaatgacgccataatgttctatcatataacatatttctatc 55029013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 20105530 - 20105604
Alignment:
Q  139 aagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatatttc 213  Q
    ||||||| | ||| ||| || ||| |||||||| ||||||||||| | ||||| | |||||||||||||||||||    
T  20105530 aagccttgtcctactaagtgagattggctacatggatcaaatgacgccataatgtcctatcatataccatatttc 20105604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 1777029 - 1777102
Alignment:
Q  139 aagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatattt 212  Q
    ||||||||| | ||||| |||| |||||||||| ||||||||||| | ||| | |||||||||| |||| ||||    
T  1777029 aagccttatcccattaagtggggtcggctacatggatcaaatgacgccatactgttctatcatacaccaaattt 1777102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 7970418 - 7970471
Alignment:
Q  164 ggctacattgatcaaatgacactataatcttctatcatataccatatttctatc 217  Q
    |||||||| ||||||| ||||| ||||| || |||||||||| |||||||||||    
T  7970418 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatc 7970471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 37798121 - 37798048
Alignment:
Q  139 aagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatattt 212  Q
    ||||||||| | | |||||||  ||||||||||||||||||||||   ||| | |||||||||| |||||||||    
T  37798121 aagccttatcccactaaatggagtcggctacattgatcaaatgacgtcatattgttctatcataaaccatattt 37798048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 12443347 - 12443291
Alignment:
Q  157 tgggatcggctacattgatcaaatgacactataatcttctatcatataccatatttc 213  Q
    ||||||||||||||| |||||||| |  | ||||| |||||||||| ||||||||||    
T  12443347 tgggatcggctacatggatcaaattatgccataatgttctatcataaaccatatttc 12443291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 34341407 - 34341481
Alignment:
Q  139 aagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatatttc 213  Q
    ||||||||||| | |||||||| |||||||||||| |||||| || | ||||| |||||||||| ||||||||||    
T  34341407 aagccttattccactaaatggggtcggctacattggtcaaattacgccataatgttctatcataaaccatatttc 34341481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 28208340 - 28208413
Alignment:
Q  139 aagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatattt 212  Q
    ||||||||| | | ||| |||| |||||||||| ||||||||||| | ||| | |||||||||| |||||||||    
T  28208340 aagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccatattt 28208413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 37618215 - 37618142
Alignment:
Q  139 aagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatattt 212  Q
    ||||||||| | | ||| |||| |||||||||| ||||||||||||| ||| | |||||||||| |||| ||||    
T  37618215 aagccttatcccactaagtggggtcggctacatggatcaaatgacaccatagtgttctatcatacaccaaattt 37618142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 22174252 - 22174192
Alignment:
Q  157 tgggatcggctacattgatcaaatgacactataatcttctatcatataccatatttctatc 217  Q
    |||| |||||||||| |||||||  || | ||||| |||||||| ||||||||||||||||    
T  22174252 tggggtcggctacatggatcaaacaacgccataatgttctatcacataccatatttctatc 22174192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 26741924 - 26741980
Alignment:
Q  157 tgggatcggctacattgatcaaatgacactataatcttctatcatataccatatttc 213  Q
    |||||| || |||||||||||||| || | ||||| |||||||||| ||||||||||    
T  26741924 tgggattggttacattgatcaaattacgccataatgttctatcataaaccatatttc 26741980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 28858297 - 28858237
Alignment:
Q  157 tgggatcggctacattgatcaaatgacactataatcttctatcatataccatatttctatc 217  Q
    |||| ||||||||||||||||||||| |  ||||  ||||||||||||  |||||||||||    
T  28858297 tggggtcggctacattgatcaaatgagatcataacgttctatcatataaaatatttctatc 28858237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 45836495 - 45836567
Alignment:
Q  140 agccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatattt 212  Q
    |||||||| | | ||| |||| |||||||||| ||||||||||| | ||| | |||||||||| |||||||||    
T  45836495 agccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccatattt 45836567  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 54279279 - 54279217
Alignment:
Q  150 tattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatattt 212  Q
    |||||| ||||||||||||||||||||||||||| | ||| | |||||||||| |||| ||||    
T  54279279 tattaagtgggatcggctacattgatcaaatgacgccatagtgttctatcatacaccaaattt 54279217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 21862771 - 21862831
Alignment:
Q  157 tgggatcggctacattgatcaaatgacactataatcttctatcatataccatatttctatc 217  Q
    |||| |||||||||| ||||||||||||| ||| |||||||||  ||| ||||||||||||    
T  21862771 tggggtcggctacatggatcaaatgacaccatattcttctatccaatatcatatttctatc 21862831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 55244514 - 55244470
Alignment:
Q  173 gatcaaatgacactataatcttctatcatataccatatttctatc 217  Q
    ||||||| ||||| ||||| |||||||||||||||||||||||||    
T  55244514 gatcaaacgacaccataatgttctatcatataccatatttctatc 55244470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 7895892 - 7895965
Alignment:
Q  139 aagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatattt 212  Q
    ||||||||| | ||||| |||| |||||||||| ||||||||||| | ||| | |||||||||| |||| ||||    
T  7895892 aagccttatcccattaagtggggtcggctacatggatcaaatgacgccatagtgttctatcatacaccaaattt 7895965  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 42026566 - 42026626
Alignment:
Q  157 tgggatcggctacattgatcaaatgacactataatcttctatcatataccatatttctatc 217  Q
    |||| ||||||| ||  ||||||| || | ||||| |||||||||||||||||||||||||    
T  42026566 tggggtcggctaaatgaatcaaataacgccataatgttctatcatataccatatttctatc 42026626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 8181051 - 8180977
Alignment:
Q  138 gaagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatattt 212  Q
    |||||||||| | | ||| |||| |||||||||| ||||||||||||||||| | |||||||||| |||| ||||    
T  8181051 gaagccttatcccactaagtggggtcggctacatggatcaaatgacactatagtgttctatcatacaccaaattt 8180977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 13443920 - 13443993
Alignment:
Q  139 aagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatattt 212  Q
    ||||||||| | | |||||||| |||||||||| ||||||||||| | ||||| |||||| ||| |||||||||    
T  13443920 aagccttatcccactaaatggggtcggctacatcgatcaaatgacgccataatgttctataataaaccatattt 13443993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 8197576 - 8197631
Alignment:
Q  162 tcggctacattgatcaaatgacactataatcttctatcatataccatatttctatc 217  Q
    |||||||||| ||||||| ||| | ||||| |||||||||||| ||||||||||||    
T  8197576 tcggctacatggatcaaacgacgccataatattctatcatatatcatatttctatc 8197631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 8202336 - 8202391
Alignment:
Q  162 tcggctacattgatcaaatgacactataatcttctatcatataccatatttctatc 217  Q
    |||||||||| ||||||| ||| | ||||| |||||||||||| ||||||||||||    
T  8202336 tcggctacatggatcaaacgacgccataatattctatcatatatcatatttctatc 8202391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 26202945 - 26202984
Alignment:
Q  162 tcggctacattgatcaaatgacactataatcttctatcat 201  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  26202945 tcggctacatggatcaaatgacgctataatcttctatcat 26202984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 32402750 - 32402692
Alignment:
Q  159 ggatcggctacattgatcaaatgacactataatcttctatcatataccatatttctatc 217  Q
    |||||| |||| | |||||||||| || ||||| |||||||||||||| ||||||||||    
T  32402750 ggatcgtctacgtggatcaaatgaaaccataatgttctatcatataccttatttctatc 32402692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 33504494 - 33504420
Alignment:
Q  139 aagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatatttc 213  Q
    ||||||||| | | ||| |||| ||||||| || |||||||| || | ||||| |||||||||||||||||||||    
T  33504494 aagccttatcccactaagtggggtcggctagatggatcaaattacgccataatgttctatcatataccatatttc 33504420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 10569107 - 10569161
Alignment:
Q  163 cggctacattgatcaaatgacactataatcttctatcatataccatatttctatc 217  Q
    ||||||||| |||||||||| | |||||| ||||||||||||| |||||||||||    
T  10569107 cggctacatggatcaaatgatattataatgttctatcatatacgatatttctatc 10569161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 9593004 - 9592931
Alignment:
Q  139 aagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatattt 212  Q
    ||||||||| | ||||| |||| |||||||||| ||||||||||| ||||| | |||||||||| |||| ||||    
T  9593004 aagccttatcccattaagtggggtcggctacatggatcaaatgacgctatagtgttctatcatacaccaaattt 9592931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 6025853 - 6025797
Alignment:
Q  161 atcggctacattgatcaaatgacactataatcttctatcatataccatatttctatc 217  Q
    ||||||||||| ||||||||||| | || || |||||||| ||||||||||||||||    
T  6025853 atcggctacatggatcaaatgacgccatcatgttctatcagataccatatttctatc 6025797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 38869134 - 38869074
Alignment:
Q  157 tgggatcggctacattgatcaaatgacactataatcttctatcatataccatatttctatc 217  Q
    |||| |||||||||| ||||||| ||| | ||||| |||||||||||||||||| ||||||    
T  38869134 tggggtcggctacatggatcaaacgacgccataatgttctatcatataccatatatctatc 38869074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 40920576 - 40920619
Alignment:
Q  174 atcaaatgacactataatcttctatcatataccatatttctatc 217  Q
    |||||| ||||| ||||| |||||||||||||||||||||||||    
T  40920576 atcaaaagacaccataatattctatcatataccatatttctatc 40920619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 25979243 - 25979316
Alignment:
Q  139 aagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatattt 212  Q
    ||||||||| | | ||| |||| |||||||||| ||||||||||| | ||| | |||||||||| |||||||||    
T  25979243 aagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccatattt 25979316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 34792361 - 34792434
Alignment:
Q  139 aagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatattt 212  Q
    ||||||||| | ||||| |||| |||||||||| ||||||||||| | ||| | |||||||||| |||| ||||    
T  34792361 aagccttatcccattaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccaaattt 34792434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 52921350 - 52921277
Alignment:
Q  139 aagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatattt 212  Q
    ||||||||| | | ||| |||| |||||||||| ||||||||||| | ||| | |||||||||| |||||||||    
T  52921350 aagccttatcccactaagtggggtcggctacatggatcaaatgacgcaatagtgttctatcataaaccatattt 52921277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 2545134 - 2545182
Alignment:
Q  162 tcggctacattgatcaaatgacactataatcttctatcatataccatat 210  Q
    ||||||| |||||||||| ||||| ||||| |||||||||||| |||||    
T  2545134 tcggctaaattgatcaaacgacaccataatgttctatcatatatcatat 2545182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 7124385 - 7124333
Alignment:
Q  165 gctacattgatcaaatgacactataatcttctatcatataccatatttctatc 217  Q
    ||||||| ||||||| ||||| |||||  |||||| |||||||||||||||||    
T  7124385 gctacatggatcaaacgacaccataatgctctatcctataccatatttctatc 7124333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 27072522 - 27072574
Alignment:
Q  162 tcggctacattgatcaaatgacactataatcttctatcatataccatatttct 214  Q
    |||||||||| |||||||| || | ||||| |||||||||| |||||||||||    
T  27072522 tcggctacatggatcaaattacgccataatgttctatcataaaccatatttct 27072574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 52160269 - 52160333
Alignment:
Q  153 taaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatatttctatc 217  Q
    |||||| | ||||||| ||  |||||||| ||| ||||| |||||||||||| ||||||||||||    
T  52160269 taaatgaggtcggctatatgcatcaaatgtcaccataatattctatcatatatcatatttctatc 52160333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 12611767 - 12611691
Alignment:
Q  139 aagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatatttcta 215  Q
    ||||||||| | | ||| ||||||||||||||| ||||||| ||||| ||||  ||||| |||||| ||||||||||    
T  12611767 aagccttatcccactaattgggatcggctacatggatcaaacgacaccataaagttctaacatatatcatatttcta 12611691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 23492286 - 23492226
Alignment:
Q  157 tgggatcggctacattgatcaaatgacactataatcttctatcatataccatatttctatc 217  Q
    |||| |||||||||| ||| ||||||||| ||| | |||||||||||| ||||||||||||    
T  23492286 tggggtcggctacatggattaaatgacaccatagtgttctatcatatatcatatttctatc 23492226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 25473415 - 25473488
Alignment:
Q  139 aagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatattt 212  Q
    ||||||||| | | ||| |||| |||||||||| ||||||||||| ||||| | |||||||||| |||| ||||    
T  25473415 aagccttatcccactaagtggggtcggctacatggatcaaatgacgctatagtgttctatcatacaccaaattt 25473488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 38391923 - 38391979
Alignment:
Q  157 tgggatcggctacattgatcaaatgacactataatcttctatcatataccatatttc 213  Q
    |||||||||| |||| ||| |||| || | ||||| |||||||||||||||||||||    
T  38391923 tgggatcggccacatggatgaaattacgccataatattctatcatataccatatttc 38391979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 82988 - 82915
Alignment:
Q  139 aagccttattctattaaatgggatcggctacattgatcaaatgacactataatcttctatcatataccatattt 212  Q
    ||||||||||| ||||| |||| |||||||||| |||||||||||   ||| | |||||||||| | |||||||    
T  82988 aagccttattccattaagtggggtcggctacatggatcaaatgacgtcatagtgttctatcataaatcatattt 82915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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