View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7684_low_4 (Length: 307)

Name: NF7684_low_4
Description: NF7684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7684_low_4
NF7684_low_4
[»] chr1 (2 HSPs)
chr1 (63-296)||(4685351-4685584)
chr1 (63-127)||(4612023-4612087)
[»] chr5 (1 HSPs)
chr5 (63-183)||(5113169-5113289)
[»] chr4 (3 HSPs)
chr4 (63-201)||(53557003-53557141)
chr4 (63-177)||(40254566-40254680)
chr4 (63-183)||(21173503-21173623)
[»] chr2 (1 HSPs)
chr2 (63-193)||(40820104-40820234)
[»] chr3 (1 HSPs)
chr3 (74-200)||(47846978-47847104)
[»] chr7 (1 HSPs)
chr7 (63-199)||(41208777-41208913)
[»] chr6 (1 HSPs)
chr6 (63-115)||(34357172-34357224)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 63 - 296
Target Start/End: Original strand, 4685351 - 4685584
Alignment:
Q  63 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4685351 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 4685450  T
Q  163 tggtggtaactggattgctctcccacaaaaaattggtaatattttcataaccctaattttttcaatatatttacatgtttgtatcctttcnnnnnnncct 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||    
T  4685451 tggtggtaactggattgctctcccacaaaaaattggtaatattttcataaccctaattttttcaatatatttacatgtttgtatcctttctttttttcct 4685550  T
Q  263 tgataaatttgttactcgtccactatatcttcat 296  Q
    ||||||||||||||||||||||||||||||||||    
T  4685551 tgataaatttgttactcgtccactatatcttcat 4685584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 4612087 - 4612023
Alignment:
Q  63 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagat 127  Q
    |||| |||||||||||||||||||||| ||| || |||| ||| ||||||||||| || ||||||    
T  4612087 tgggaagagctccttgttgtgacaaagaaaaagttaagagaggaccatggtctcctgatgaagat 4612023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 63 - 183
Target Start/End: Original strand, 5113169 - 5113289
Alignment:
Q  63 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 162  Q
    |||| ||||||||||| ||||||||||| || || || |||||||||||||| || ||||||||| |||||||||| ||||||||||||||| |||||||    
T  5113169 tgggaagagctccttgctgtgacaaagccaatgtcaaaaaaggtccatggtcacctgaagaagatgctaaactcaagtcttacatagaacaaaatggtac 5113268  T
Q  163 tggtggtaactggattgctct 183  Q
    |||||| || |||||||||||    
T  5113269 tggtggaaattggattgctct 5113289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 201
Target Start/End: Original strand, 53557003 - 53557141
Alignment:
Q  63 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 162  Q
    ||||||||||||| || |||||||| || |||||||||||||| || |||||||| ||||||||| ||| ||||||||||||||| |||  | |||| ||    
T  53557003 tgggtagagctccatgctgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatgctacactcaaatcttacattgaaacaaatggaac 53557102  T
Q  163 tggtggtaactggattgctctcccacaaaaaattggtaa 201  Q
    ||| || || ||||||||||| || ||||||||||||||    
T  53557103 tggaggaaattggattgctcttcctcaaaaaattggtaa 53557141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 63 - 177
Target Start/End: Complemental strand, 40254680 - 40254566
Alignment:
Q  63 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 162  Q
    |||| ||||||||||||||||||||||| || || |||| |||||||||||| || |||||||| || ||||||||| |||| ||  |||||||||||||    
T  40254680 tggggagagctccttgttgtgacaaagccaatgtcaagagaggtccatggtcacctgaagaagactccaaactcaaagcttatattcaacaacatggtac 40254581  T
Q  163 tggtggtaactggat 177  Q
     ||||||||||||||    
T  40254580 aggtggtaactggat 40254566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 183
Target Start/End: Original strand, 21173503 - 21173623
Alignment:
Q  63 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 162  Q
    |||| |||||||| |||||||||||| |||  || |||| |||||||||||| |||||||||||||| || || |||  |||||||||  ||||||| ||    
T  21173503 tgggaagagctccatgttgtgacaaaacaagtgttaagagaggtccatggtcaccagaagaagattcaaagcttaaagattacatagagaaacatggcac 21173602  T
Q  163 tggtggtaactggattgctct 183  Q
    |||||| || |||||| ||||    
T  21173603 tggtggaaattggatttctct 21173623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 193
Target Start/End: Complemental strand, 40820234 - 40820104
Alignment:
Q  63 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 162  Q
    |||| ||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||| | || ||||||   || |||||| | ||||| ||    
T  40820234 tgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccatggtcaccagaagaagatacaaagctcaaagagtatatagaaaagcatggaac 40820135  T
Q  163 tggtggtaactggattgctctcccacaaaaa 193  Q
    |||||| || |||||| |||| || ||||||    
T  40820134 tggtggaaattggatttctcttcctcaaaaa 40820104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 74 - 200
Target Start/End: Complemental strand, 47847104 - 47846978
Alignment:
Q  74 ccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtactggtggtaact 173  Q
    ||||| |||||||||||||||||||||||||| || ||||| ||||||||||||   || |||||||| |||||  || | ||||| || ||||||||||    
T  47847104 ccttgctgtgacaaagcaaacgtgaagaaaggaccttggtcaccagaagaagatgacaagctcaaatcctacatccaagagcatggaaccggtggtaact 47847005  T
Q  174 ggattgctctcccacaaaaaattggta 200  Q
    ||||  || | |||||||| |||||||    
T  47847004 ggatcactttgccacaaaagattggta 47846978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 199
Target Start/End: Complemental strand, 41208913 - 41208777
Alignment:
Q  63 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 162  Q
    |||| ||| ||||||| ||||||||||| || || |||||||||||||||||||| ||||||||| | ||||| ||    ||||||||  ||||||| ||    
T  41208913 tgggaagatctccttgctgtgacaaagctaatgtaaagaaaggtccatggtctcctgaagaagatgcaaaactaaaggaatacatagagaaacatggaac 41208814  T
Q  163 tggtggtaactggattgctctcccacaaaaaattggt 199  Q
    ||| || ||||||||| |||| ||| ||||| |||||    
T  41208813 tggaggaaactggattactctgccaaaaaaagttggt 41208777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 34357172 - 34357224
Alignment:
Q  63 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtct 115  Q
    ||||||| ||||| |||||||||||| |||| ||||| | |||||||||||||    
T  34357172 tgggtagggctccatgttgtgacaaatcaaaagtgaaaagaggtccatggtct 34357224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University