View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7684_low_5 (Length: 250)
Name: NF7684_low_5
Description: NF7684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7684_low_5 |
 | |
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| [»] scaffold0074 (1 HSPs) |
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| [»] chr6 (14 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0074 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 49604 - 49367
Alignment:
| Q |
13 |
aatattcacgcaaataaagaatccctctaacaattcctactatgatgttgaagcgttcaacccaagttaacaacttttcttgttgagaatctacaaaata |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
49604 |
aatattcatgcaaataaagaatccctctaacaattcctactatgatgttgaagcgttcaacccaagttaacaacttttgttgttgagaatctacaaaata |
49505 |
T |
|
| Q |
113 |
gttcacgaaattaaattaagtccatatatagnnnnnnngttttatatgtaatgcatcaatctaaatattgacaaatgaaagagtttcgagagaaaagtgt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49504 |
gttcacgaaattaaattaagtccatatatagaaaaaaagttgtatatgtaatgcatcaatctaaatattgacaaatgaaagagtttcgagagaaaagtgt |
49405 |
T |
|
| Q |
213 |
ctaaccaaatagaaagaaatcaagacttttgttgggca |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49404 |
ctaaccaaatagaaagaaatcaagacttttgttgggca |
49367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 6e-86; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 18995859 - 18996092
Alignment:
| Q |
17 |
ttcacgcaaataaagaatccctctaacaattcctactatgatgttgaagcgttcaacccaagttaacaacttttcttgttgagaatctacaaaatagttc |
116 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
18995859 |
ttcatgcaaataaagaatccctcgaacaattcctcctatgatgttgaagcgttcaacccaagttaacaacttttgttgttgagaatctacaaaatagttc |
18995958 |
T |
|
| Q |
117 |
acgaaattaaattaagtccatatatagnnnnnnngttttatatgtaatgcatcaatctaaatattgacaaatgaaagagtttcgagagaaaagtgtctaa |
216 |
Q |
| |
|
||||||| |||||||| | |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
18995959 |
acgaaataaaattaagacaatatatagaaaaaaagttatatatgtaatgcatcaatctaaatattgacaaatgaaagagtttaaagtgaaaagtgtctaa |
18996058 |
T |
|
| Q |
217 |
ccaaatagaaagaaatcaagacttttgttgggca |
250 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| |
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|
| T |
18996059 |
ccaaatagaaagaaatcaagactatagttgggca |
18996092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 20236186 - 20236413
Alignment:
| Q |
22 |
gcaaataaagaatccctctaacaattcctactatgatgttgaagcgttcaacccaagttaacaacttttcttgttgagaatctacaaaatagttcacgaa |
121 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
20236186 |
gcaaataaagaatccctcggacaattcctcctatgatgttgaagcgttcaacccaagttaacaacttttgttgttgagaatctacaaaatagttcacgaa |
20236285 |
T |
|
| Q |
122 |
attaaattaagtccatatatagnnnnnnngttttatatgtaatgcatcaatctaaatattgacaaatgaaagagtttcgagagaaaagtgtctaaccaaa |
221 |
Q |
| |
|
|| |||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| |
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|
| T |
20236286 |
ataaaattaagtccatatacagaaaaaaa-ttgtatatataatgcatcaatctaaatattgacaaatgaaagaggttaaagtgaaaagtgtctaaccaaa |
20236384 |
T |
|
| Q |
222 |
tagaaagaaatcaagacttttgttgggca |
250 |
Q |
| |
|
||||||| |||||||||| |||||||||| |
|
|
| T |
20236385 |
tagaaagtaatcaagactcttgttgggca |
20236413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 22130170 - 22130397
Alignment:
| Q |
22 |
gcaaataaagaatccctctaacaattcctactatgatgttgaagcgttcaacccaagttaacaacttttcttgttgagaatctacaaaatagttcacgaa |
121 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
22130170 |
gcaaataaagaatccctcggacaattcctcctatgatgttgaagcgttcaacccaagttaacaacttttgttgttgagaatctacaaaatagttcacgaa |
22130269 |
T |
|
| Q |
122 |
attaaattaagtccatatatagnnnnnnngttttatatgtaatgcatcaatctaaatattgacaaatgaaagagtttcgagagaaaagtgtctaaccaaa |
221 |
Q |
| |
|
|| |||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| |
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|
| T |
22130270 |
ataaaattaagtccatatacagaaaaaaa-ttgtatatataatgcatcaatctaaatattgacaaatgaaagaggttaaagtgaaaagtgtctaaccaaa |
22130368 |
T |
|
| Q |
222 |
tagaaagaaatcaagacttttgttgggca |
250 |
Q |
| |
|
||||||| |||||||||| |||||||||| |
|
|
| T |
22130369 |
tagaaagtaatcaagactcttgttgggca |
22130397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 22206824 - 22206592
Alignment:
| Q |
17 |
ttcacgcaaataaagaatccctctaacaattcctactatgatgttgaagcgttcaacccaagttaacaacttttcttgttgagaatctacaaaatagttc |
116 |
Q |
| |
|
|||| |||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22206824 |
ttcatgcaaataaagaatccctcaaacaatacctcctatgatgttgaagcgttcaacccaagttaacaacttttgccgttgagaatctacaaaatagttc |
22206725 |
T |
|
| Q |
117 |
acgaaattaaattaagtccatatatagnnnnnnngttttatatgtaatgcatcaatctaaatattgacaaatgaaagagtttcgagagaaaagtgtctaa |
216 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||| || || ||||||||||||| |
|
|
| T |
22206724 |
acgaaataaaattaagtccatatatag-aaaaaagttagatatgtaattcatcaatctaaatattgacaaatgaaagaggttaaagtgaaaagtgtctaa |
22206626 |
T |
|
| Q |
217 |
ccaaatagaaagaaatcaagacttttgttgggca |
250 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| |
|
|
| T |
22206625 |
ccaaatagaaagtaatcaagactcttgttgggca |
22206592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 21968359 - 21968581
Alignment:
| Q |
22 |
gcaaataaagaatccctctaacaattcctactatgatgttgaagcgttcaacccaagttaacaacttttcttgttgagaatctacaaaatagttcacgaa |
121 |
Q |
| |
|
||||||||||||| |||| | |||||||| | |||||||| |||||||||||||||||||||||||||| || |||||||||||||||| ||||| || |
|
|
| T |
21968359 |
gcaaataaagaattcctcgagcaattcctccaatgatgttaaagcgttcaacccaagttaacaacttttgctgatgagaatctacaaaattgttcataaa |
21968458 |
T |
|
| Q |
122 |
attaaattaagtccatatatagnnnnnnngttttatatgtaatgcatcaatctaaatattgacaaatgaaagagtttcgagagaaaagtgtctaaccaaa |
221 |
Q |
| |
|
|| |||| |||||||||||||| | ||||||||||| || ||||| ||||||||||||||||||||||| | |||||||||| |||||| |
|
|
| T |
21968459 |
ataaaatcaagtccatatatagaaaaac---tatatatgtaatgtatgaatcttaatattgacaaatgaaagagttttaggtgaaaagtgtcataccaaa |
21968555 |
T |
|
| Q |
222 |
tagaaagaaatcaagacttttgttgg |
247 |
Q |
| |
|
|| |||| |||||||||| ||||||| |
|
|
| T |
21968556 |
taaaaagtaatcaagactcttgttgg |
21968581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 20084080 - 20084180
Alignment:
| Q |
17 |
ttcacgcaaataaagaatccctctaacaattcctactatgatgttgaagcgttcaacccaagttaacaacttttcttgttgagaatctacaaaatagttc |
116 |
Q |
| |
|
|||| |||||||||||| |||| |||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20084080 |
ttcatgcaaataaagaagtcctcgaacaattcctcctatgatattgaagcgttcaacccaagttaacaacttttgttgttgagaatctacaaaatagttc |
20084179 |
T |
|
| Q |
117 |
a |
117 |
Q |
| |
|
| |
|
|
| T |
20084180 |
a |
20084180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 24386929 - 24386829
Alignment:
| Q |
17 |
ttcacgcaaataaagaatccctctaacaattcctactatgatgttgaagcgttcaacccaagttaacaacttttcttgttgagaatctacaaaatagttc |
116 |
Q |
| |
|
|||| |||||||||||| |||| | |||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24386929 |
ttcatgcaaataaagaagtcctcgagcaattcctcctatgatattgaagcgttcaacccaagttaacaacttttgttgttgagaatctacaaaatagttc |
24386830 |
T |
|
| Q |
117 |
a |
117 |
Q |
| |
|
| |
|
|
| T |
24386829 |
a |
24386829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 18979784 - 18979882
Alignment:
| Q |
17 |
ttcacgcaaataaagaatccctctaacaattcctactatgatgttgaagcgttcaacccaagttaacaacttttcttgttgagaatctacaaaatagtt |
115 |
Q |
| |
|
|||| |||||||||||| || | |||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18979784 |
ttcatgcaaataaagaagtccacgaacaattcctcctatgatattgaagcgttcaacccaagttaacaacttttgttgttgagaatctacaaaatagtt |
18979882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 22086238 - 22086363
Alignment:
| Q |
17 |
ttcacgcaaataaagaatccctctaacaattcctactatgatgttgaagcgttcaacccaagttaacaacttttcttgttgagaatctacaaaatagttc |
116 |
Q |
| |
|
|||| ||||||||||||| |||| | |||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
22086238 |
ttcatgcaaataaagaattcctccagcaattcctcctatgatgttaaagcgttcaacccaagttaacaacttttgctgttgagaatctacaaaattgttt |
22086337 |
T |
|
| Q |
117 |
acgaaattaaattaagtccatatata |
142 |
Q |
| |
|
| ||||| |||| || | |||||||| |
|
|
| T |
22086338 |
atgaaataaaatcaacttcatatata |
22086363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 155 - 250
Target Start/End: Original strand, 20084198 - 20084286
Alignment:
| Q |
155 |
tatatgtaatgcatcaatctaaatattgacaaatgaaagagtttcgagagaaaagtgtctaaccaaatagaaagaaatcaagacttttgttgggca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20084198 |
tatatgtaatgcatcaatctaaatattgacaaatggaagagttt-------aaagtgtctaaccaaatagaaagaaatcaagacttttgtttggca |
20084286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 155 - 250
Target Start/End: Complemental strand, 24386811 - 24386723
Alignment:
| Q |
155 |
tatatgtaatgcatcaatctaaatattgacaaatgaaagagtttcgagagaaaagtgtctaaccaaatagaaagaaatcaagacttttgttgggca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24386811 |
tatatgtaatgcatcaatctaaatattgacaaatggaagagttt-------aaagtgtctaaccaaatagaaagaaatcaagacttttgtttggca |
24386723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 18991136 - 18991236
Alignment:
| Q |
17 |
ttcacgcaaataaagaatccctctaacaattcctactatgatgttgaagcgttcaacccaagttaacaacttttcttgttgagaatctacaaaatagttc |
116 |
Q |
| |
|
|||| |||||||||||| |||| ||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
18991136 |
ttcatgcaaataaagaagtcctcgaacaattccacctatgatactgaagcgttcaacccaagttaacaacttttgttgttgaaaatctacaaaatagttc |
18991235 |
T |
|
| Q |
117 |
a |
117 |
Q |
| |
|
| |
|
|
| T |
18991236 |
a |
18991236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 155 - 250
Target Start/End: Original strand, 18979902 - 18979990
Alignment:
| Q |
155 |
tatatgtaatgcatcaatctaaatattgacaaatgaaagagtttcgagagaaaagtgtctaaccaaatagaaagaaatcaagacttttgttgggca |
250 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18979902 |
tatatgtaatgcatcaatctacatattgacaaatggaagagttt-------aaagtatctaaccaaatagaaagaaatcaagacttttgtttggca |
18979990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 18991254 - 18991324
Alignment:
| Q |
155 |
tatatgtaatgcatcaatctaaatattgacaaatgaaagagtttcgagagaaaagtgtctaaccaaatagaaagaaat |
232 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18991254 |
tatatgtaatgcatcaatctaaatatttacaaatggaagagttt-------aaagtgtctaaccaaatagaaagaaat |
18991324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 250
Target Start/End: Complemental strand, 7140 - 6913
Alignment:
| Q |
22 |
gcaaataaagaatccctctaacaattcctactatgatgttgaagcgttcaacccaagttaacaacttttcttgttgagaatctacaaaatagttcacgaa |
121 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||| ||| |
|
|
| T |
7140 |
gcaaataaagaatccctcgaacaattcctcctatgatgttgaagcgttcaccccaagttaacaacttttgtttttgagaatctacaaaatagttcaggaa |
7041 |
T |
|
| Q |
122 |
attaaattaagtccatatatagnnnnnnngttttatatgtaatgcatcaatctaaatattgacaaatgaaagagtttcgagagaaaagtgtctaaccaaa |
221 |
Q |
| |
|
|| |||||||| | |||||||| || |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
7040 |
ataaaattaagccaatatatagaaaaaac-ttatatatgtaatgcatcaatctaaatattgacaaatgaaagagtttaaaaagaaaagtgtctaaccaaa |
6942 |
T |
|
| Q |
222 |
tagaaagaaatcaagacttttgttgggca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6941 |
tagaaagaaatcaagacttttgttgggca |
6913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 9102721 - 9102630
Alignment:
| Q |
43 |
caattcctactatgatgttgaagcgttcaacccaagttaacaacttttcttgttgagaatctacaaaatagttcacgaaattaaattaagtc |
134 |
Q |
| |
|
|||||||| ||| ||||| ||||||||| ||||||||||||| |||| |||||||||||||||||| ||||| ||||| |||| ||||| |
|
|
| T |
9102721 |
caattcctcctagcatgttaaagcgttcagcccaagttaacaatttttaccgttgagaatctacaaaattgttcatgaaataaaatcaagtc |
9102630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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