View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7684_low_6 (Length: 238)
Name: NF7684_low_6
Description: NF7684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7684_low_6 |
 | |
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| [»] scaffold0074 (1 HSPs) |
| | |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0074 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 48986 - 48764
Alignment:
| Q |
1 |
aaaagttgttggttgctgtttgaattaccacccaatcgaattgtagtggttctaaagtggcactttcttcaccaactagataaaattcatttgattttgt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48986 |
aaaagttgttggttgctgcttgaattaccacccaatcgaattgtagtggttctaaagtcgcactttcttcaccaactagataaaattcatttgattttgt |
48887 |
T |
|
| Q |
101 |
ttttaaaagttattaaacatcttaaatcttattagaaattgcaagattagaagaacctttcttcatacataaataagacagtgcttacaattttctctaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
48886 |
ttttaaaagttattaaacatcttaaatcttattagaaattgcaagattagaagaacctttcttcatacataaataagacagtacttacaattttctctaa |
48787 |
T |
|
| Q |
201 |
gaatagtcctacgactctttctt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
48786 |
gaatagtcctacgactctttctt |
48764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 18980659 - 18980881
Alignment:
| Q |
1 |
aaaagttgttggttgctgtttgaattaccacccaatcgaattgtagtggttctaaagtggcactttcttcaccaactagataaaattcatttgattttgt |
100 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
18980659 |
aaaagttgttggttgctgcttcaattaccacccaatcgaattgtagtggttctaaagtggcactttcttcaccaactggataaaattcatttgattttgt |
18980758 |
T |
|
| Q |
101 |
ttttaaaagttattaaacatcttaaatcttattagaaattgcaagattagaagaacctttcttcatacataaataagacagtgcttacaattttctctaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||| || |
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|
| T |
18980759 |
ttttaaaagttattaaacatcttaaatcttattagaaattccaagatcagaagaacctttcttcatacataaataagacagtacttacaattttctcgaa |
18980858 |
T |
|
| Q |
201 |
gaatagtcctacgactctttctt |
223 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
18980859 |
aaatagtcctacgactctttctt |
18980881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 20084955 - 20085177
Alignment:
| Q |
1 |
aaaagttgttggttgctgtttgaattaccacccaatcgaattgtagtggttctaaagtggcactttcttcaccaactagataaaattcatttgattttgt |
100 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20084955 |
aaaagttgttggttgctgcttcaattaccacccaatcgaattgtagtggttctaaagtcgcactttcttcaccaactagataaaattcatttgattttgt |
20085054 |
T |
|
| Q |
101 |
ttttaaaagttattaaacatcttaaatcttattagaaattgcaagattagaagaacctttcttcatacataaataagacagtgcttacaattttctctaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| || |
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|
| T |
20085055 |
ttttaaaagttattaaacatcttaaatcttattagaaattgcaagattagaagaacgtttcttcatacataaataagacagtacttacaattttctcgaa |
20085154 |
T |
|
| Q |
201 |
gaatagtcctacgactctttctt |
223 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
20085155 |
gaatagtcctttgactctttctt |
20085177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 22206190 - 22205968
Alignment:
| Q |
1 |
aaaagttgttggttgctgtttgaattaccacccaatcgaattgtagtggttctaaagtggcactttcttcaccaactagataaaattcatttgattttgt |
100 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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|
| T |
22206190 |
aaaagttgttggttgctgcttcaattaccacccaatcgaattgcagtggttctaaagtcgcactttcttcaccaactagataaaattcatttgatttagt |
22206091 |
T |
|
| Q |
101 |
ttttaaaagttattaaacatcttaaatcttattagaaattgcaagattagaagaacctttcttcatacataaataagacagtgcttacaattttctctaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||| || |
|
|
| T |
22206090 |
ttttaaaagttattaaacatcttaaatcttaaaagaaattgcaagatcagaagaacctttcttcatacataaataaaacagtacttacaattttctcgaa |
22205991 |
T |
|
| Q |
201 |
gaatagtcctacgactctttctt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
22205990 |
gaatagtcctacgactctttctt |
22205968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 18996473 - 18996705
Alignment:
| Q |
1 |
aaaagttgttggttgctgtttgaattaccacccaatcgaattgtagtggttctaaagtggcactttcttcaccaactaga-------taaaattcatttg |
93 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||| ||||| |
|
|
| T |
18996473 |
aaaagttgttggatgctgcttcaattaccacccaatcgaattgtagtggttctaaagtcgcactttcttcaccaactagacagtagatacaatttatttg |
18996572 |
T |
|
| Q |
94 |
attttgtttttaaa---agttattaaacatcttaaatcttattagaaattgcaagattagaagaacctttcttcatacataaataagacagtgcttacaa |
190 |
Q |
| |
|
|||| ||||||||| ||||||||||| | ||||||||||| ||| ||||||||| | | |||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
18996573 |
atttagtttttaaattaagttattaaacttgttaaatcttatatgaagttgcaagatcaaaggaacctttctgcatacataaataagacagtacttacaa |
18996672 |
T |
|
| Q |
191 |
ttttctctaagaatagtcctacgactctttctt |
223 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
18996673 |
ttttctcgaagaatagtcctacgactctttctt |
18996705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 20236891 - 20237116
Alignment:
| Q |
1 |
aaaagttgttggttgctgtttgaattaccacccaatcgaattgtagtggttctaaagtggcactttcttcaccaactagataaaattcatttgattttgt |
100 |
Q |
| |
|
||||||| |||||||||| || ||| |||||||| |||||||| ||||| ||||| |||||||||||||||||||||| ||| |||| |||||||| || |
|
|
| T |
20236891 |
aaaagttcttggttgctgcttcaataaccacccagtcgaattgcagtggctctaatgtggcactttcttcaccaactaaatacaatttgtttgatttagt |
20236990 |
T |
|
| Q |
101 |
ttttaa---aagttattaaacatcttaaatcttattagaaattgcaagattagaagaacctttcttcatacataaataagacagtgcttacaattttctc |
197 |
Q |
| |
|
|||||| | ||||||||| |||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
20236991 |
ttttaatttaggttattaaatttcttaaatcttacaagaaattggaagatcagaagaacctttcttcatacataaatattacagcacttacaattttctc |
20237090 |
T |
|
| Q |
198 |
taagaatagtcctacgactctttctt |
223 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
20237091 |
gaagaatagtcctacgactctttctt |
20237116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 22130875 - 22131100
Alignment:
| Q |
1 |
aaaagttgttggttgctgtttgaattaccacccaatcgaattgtagtggttctaaagtggcactttcttcaccaactagataaaattcatttgattttgt |
100 |
Q |
| |
|
||||||| |||||||||| || ||| |||||||| |||||||| ||||| ||||| |||||||||||||||||||||| ||| |||| |||||||| || |
|
|
| T |
22130875 |
aaaagttcttggttgctgcttcaataaccacccagtcgaattgcagtggctctaatgtggcactttcttcaccaactaaatacaatttgtttgatttagt |
22130974 |
T |
|
| Q |
101 |
ttttaa---aagttattaaacatcttaaatcttattagaaattgcaagattagaagaacctttcttcatacataaataagacagtgcttacaattttctc |
197 |
Q |
| |
|
|||||| | ||||||||| |||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
22130975 |
ttttaatttaggttattaaatttcttaaatcttacaagaaattggaagatcagaagaacctttcttcatacataaatattacagcacttacaattttctc |
22131074 |
T |
|
| Q |
198 |
taagaatagtcctacgactctttctt |
223 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
22131075 |
gaagaatagtcctacgactctttctt |
22131100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 20193000 - 20193103
Alignment:
| Q |
1 |
aaaagttgttggttgctgtttgaattaccacccaatcgaattgtagtggttctaaagtggcactttcttcaccaactagataaaattcatttgattttgt |
100 |
Q |
| |
|
|||||||||| ||||||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
20193000 |
aaaagttgtttgttgctgcttcaattaccatccaatcgaattgtagtggttctaaagtcgcactttcttcaccaactagataaaatttatttgatgttgg |
20193099 |
T |
|
| Q |
101 |
tttt |
104 |
Q |
| |
|
|||| |
|
|
| T |
20193100 |
tttt |
20193103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 22087023 - 22087126
Alignment:
| Q |
1 |
aaaagttgttggttgctgtttgaattaccacccaatcgaattgtagtggttctaaagtggcactttcttcaccaactagataaaattcatttgattttgt |
100 |
Q |
| |
|
|||||||||| ||||||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
22087023 |
aaaagttgtttgttgctgcttcaattaccatccaatcgaattgtagtggttctaaagtcgcactttcttcaccaactagataaaatttatttgatgttgg |
22087122 |
T |
|
| Q |
101 |
tttt |
104 |
Q |
| |
|
|||| |
|
|
| T |
22087123 |
tttt |
22087126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 21969537 - 21969631
Alignment:
| Q |
1 |
aaaagttgttggttgctgtttgaattaccacccaatcgaattgtagtggttctaaagtggcactttcttcaccaactagataaaattcatttgat |
95 |
Q |
| |
|
|||||||||| ||||||| || |||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21969537 |
aaaagttgtttgttgctgcttcaattaccatccaatcgaattgcagtggctctaaagtggcactttcttcaccaactagataaaatttatttgat |
21969631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 21969693 - 21969732
Alignment:
| Q |
184 |
cttacaattttctctaagaatagtcctacgactctttctt |
223 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
21969693 |
cttacaattttctcgaagaatggtcctacgactctttctt |
21969732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6532 - 6300
Alignment:
| Q |
1 |
aaaagttgttggttgctgtttgaattaccacccaatcgaattgtagtggttctaaagtggcactttcttcaccaactaga-------taaaattcatttg |
93 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||| ||||| |
|
|
| T |
6532 |
aaaagttgttggttgctgcttcaattaccacccaatcgaattgtagtggttctaaagtcgcactttcttcaccaactagacagtagatacaatttatttg |
6433 |
T |
|
| Q |
94 |
attttgtttttaaa---agttattaaacatcttaaatcttattagaaattgcaagattagaagaacctttcttcatacataaataagacagtgcttacaa |
190 |
Q |
| |
|
|||| ||||||||| ||||||||||| | ||||||||||| ||| ||| ||||| | | |||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
6432 |
atttagtttttaaattaagttattaaacttgttaaatcttatatgaagttggaagatcaaaggaacctttctgcatacataaataagacagtacttacaa |
6333 |
T |
|
| Q |
191 |
ttttctctaagaatagtcctacgactctttctt |
223 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
6332 |
ttttctcgaagaatagtcctacgactctttctt |
6300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 10402255 - 10402339
Alignment:
| Q |
1 |
aaaagttgttggttgctgtttgaattaccacccaatcgaattgtagtggttctaaagtggcactttcttcaccaactagataaaa |
85 |
Q |
| |
|
|||||| ||||||||||| | |||||| |||| || ||||||| ||| |||||||| |||| ||| | ||||||||||||||| |
|
|
| T |
10402255 |
aaaagtggttggttgctgcctcaattacatcccagtcaaattgtaatggctctaaagttgcaccttcatgaccaactagataaaa |
10402339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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