View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7685_low_1 (Length: 324)
Name: NF7685_low_1
Description: NF7685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7685_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 33751122 - 33751324
Alignment:
| Q |
16 |
attgccttgatatatacctgcaagtgcaaatcgtgattttaatgtaatctgctttctaaaatattctacttaatgtgtggctttgttgaattatattata |
115 |
Q |
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| T |
33751122 |
attgccttgatatatacctgcaactgcaaatcgtgattttaatgtaatctgctttctaaaatattgtacttaatgtgtggctttattgaattatattata |
33751221 |
T |
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| Q |
116 |
gtataaatactagttctgttcactgattttgtctttttagcttaaagggttatatattcagcttcaatgagtacattgttttttaataaggataagaata |
215 |
Q |
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| T |
33751222 |
gtataaatactagttctgttcactgattttgtctttttagcttaaagggttatatattcagcttcaatgagtgcattgttttttaataaggataagaata |
33751321 |
T |
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| Q |
216 |
taa |
218 |
Q |
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||| |
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| T |
33751322 |
taa |
33751324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 33751396 - 33751446
Alignment:
| Q |
263 |
caataaaatttggtgaaccctatgctagcctggtaaatgtttagattgatg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33751396 |
caataaaatttggtgaaccctatgctagcctggtaaatgtttagatggatg |
33751446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 32575995 - 32576023
Alignment:
| Q |
29 |
atacctgcaagtgcaaatcgtgattttaa |
57 |
Q |
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| T |
32575995 |
atacctgcaagtgcaaatcgtgattttaa |
32576023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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