View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7686_high_12 (Length: 245)
Name: NF7686_high_12
Description: NF7686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7686_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 49976899 - 49976696
Alignment:
| Q |
22 |
ccatgacctagtctttcattttattttcatggtgcgctattgtgaaaataataaattnnnnnnnnnnttatgttgttttggttatgtgatcactaatgaa |
121 |
Q |
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| T |
49976899 |
ccatgacctagtctttcattttattttcatggtgcgctattgtgaaaataataaattaaaaaaaaaattatgttgttttggttatgtgattactaatgaa |
49976800 |
T |
|
| Q |
122 |
gaagaagatttaattaattaaataaattactgaattaccaggtggtggggaggtggtgtcaggaagaagttgtttagcatggtgatctctactagagttg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49976799 |
gaagaagatttaattaattaaataaattactgaattaccaggtggtggggaggtggtgtcagaaagaagttgtttagcatggtgatctctactagagttg |
49976700 |
T |
|
| Q |
222 |
tcat |
225 |
Q |
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|||| |
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| T |
49976699 |
tcat |
49976696 |
T |
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