View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7686_high_5 (Length: 412)
Name: NF7686_high_5
Description: NF7686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7686_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 6959424 - 6959818
Alignment:
| Q |
1 |
agaaataaggatagtagtgatgacttgcatagcaagtaactaaggaagttagttatcagtgtagcaatactatgcattaagctcatgttagttagcatat |
100 |
Q |
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| T |
6959424 |
agaaataaggatagtagtgatgacttgcatagcaagtaactaaggaagttagttatcagtgtagcaatactatgcattaagctcatgttagttagcatat |
6959523 |
T |
|
| Q |
101 |
ggattagaaagtttataaatacttgtaatacaagttagttacaataatgagaaacacatttttctattttcttctcaattcataatagaaccgacactaa |
200 |
Q |
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| T |
6959524 |
ggattagaaagtttataaatacttgtaatacaagttagttacaataatgagaaacacatttttctattttcttctcaattcataatagaaccgacactaa |
6959623 |
T |
|
| Q |
201 |
tcaagtcagcgtatcagtcacgagaatgaggaaggcagtgaaattcagctttgagaagacaatgtctgttattgttgaagtcttgaacgatttataatta |
300 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6959624 |
tcaagtcagcgtatcagtcacgaggatgaggaaggcagtgaaattcagctttgagaagacaatgtctgtcattgttgaagtcttgaacgatttataatta |
6959723 |
T |
|
| Q |
301 |
tcattccacagtgcaccacctattcctagaattttctggaatgtataccactctagtatgtaacacaaaataactttttgacatatgattcaggt |
395 |
Q |
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| T |
6959724 |
tcattccacagtgcaccacctattcgtagaattttctggaatgtataccactctagtatgtaacacaaaataactttttgacatatgattcaggt |
6959818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 4318270 - 4318340
Alignment:
| Q |
118 |
aatacttgtaatacaagttagttacaat-aatgagaaacacatttttctattttcttctcaattcataata |
187 |
Q |
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| T |
4318270 |
aatacttgttatataagctagtttcaatcaatgagaatcacatttttctattctcttctcaactcataata |
4318340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 22498776 - 22498660
Alignment:
| Q |
24 |
cttgcatagcaagtaactaaggaagttagttatcagtgtagcaatactatgcattaagctcatgttagttagcatatggattagaaagtttataaatact |
123 |
Q |
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||||||||||||||||||||| |||||||||| | | | | ||| ||||||| |||| ||||||||||||||||| ||||||| || |||| ||||| |
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| T |
22498776 |
cttgcatagcaagtaactaagatagttagttatga-tattggaatcctatgcaataagatcatgttagttagcataaggattagtttgtgtatatatact |
22498678 |
T |
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| Q |
124 |
tgtaatacaagttagtta |
141 |
Q |
| |
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|| ||||||||||||| |
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| T |
22498677 |
tgctgtacaagttagtta |
22498660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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