View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7686_high_6 (Length: 347)
Name: NF7686_high_6
Description: NF7686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7686_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 6321632 - 6321309
Alignment:
| Q |
1 |
aggaatgaacataaggcaaatatgaacatataagacaattaagaagtgatattgtaagggnnnnnnnnnnnacaaccctgcttgagggtaagtagtaggt |
100 |
Q |
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| T |
6321632 |
aggaatgaacataaggcaaatatgaacatataagacaattaagaagtgatattgtaaggggttttgttttgacaaccctgcttgatggtaagtagtaggt |
6321533 |
T |
|
| Q |
101 |
tggttcacatttatnnnnnnncctaagagtacaatttatatgnnnnnnnntgtttatttacttggtcaagagtctatttagcccaaatacatatgaggag |
200 |
Q |
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| T |
6321532 |
tggttcacatttataaaaaa-cctaagagtacaatttatatgaaaaaaattgtttatttacttggtcaagaatctatttagcccaaatacatatgaggag |
6321434 |
T |
|
| Q |
201 |
tatatagaaaattttgaaaaacataagatatggaatgattcaaattcactaatacaaatttctttaataaaatatacactaataattgtaaagtgacctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6321433 |
tatatagaaaattttgaaaaacataagatatggaatgattcagattcactaatacaaatttctttaataaaatatatactaataattgtaaagtgacctt |
6321334 |
T |
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| Q |
301 |
gtgaccgtaacaaaagagcagacaa |
325 |
Q |
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||||||||||||||||||||||||| |
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| T |
6321333 |
gtgaccgtaacaaaagagcagacaa |
6321309 |
T |
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