View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7686_low_1 (Length: 536)
Name: NF7686_low_1
Description: NF7686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7686_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 527
Target Start/End: Complemental strand, 14593133 - 14592622
Alignment:
| Q |
16 |
cacatacaggagctccttgagtccgacaatggttgcagctttgatatgttgtcaaaattggttaaaaccttttttcattgacttcaaagatcttaatttg |
115 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
14593133 |
cacatataggagttccttgagtccgacaatggctgaagctttgatatgttgtcaaaattgactaaaaccttttttcattgacttcaaagatcttaatttg |
14593034 |
T |
|
| Q |
116 |
agtgaagagtatcagcttttagagaatctcgttggaggtaacttagtagt-tgtctatgaatttattgtgtatttgatattgagtaacaaattaatttat |
214 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14593033 |
agtgaagagtatcagcttttagagaatgtcgttgaaggtaacttagtagcgtgtctatgaatttattgtgtatttgatattgagtaacaaattaatttat |
14592934 |
T |
|
| Q |
215 |
tctcttttattgatttgaatgcattgtagaaattggacaagtgttaagtggttctggagttggtcttgctggtgtttcaccaccagcaactgggcctttt |
314 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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|
| T |
14592933 |
tctcttttattgctttgaatgcattgtagaaattggacaagtgttaagtggttctggagttggtcttgctggtgtttcaccaccagcaactaggccttct |
14592834 |
T |
|
| Q |
315 |
gtttaattccactcaatggtatactatttattaactattcttactttctcatacttagagtatttgatttatgtaatactaattaagagtaatttaatgt |
414 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14592833 |
gtttaattccactaaatggtatactgtttattaactattcttactttatcatacttagagtatttgatttatgtaatactaattaagagtaatttaatgt |
14592734 |
T |
|
| Q |
415 |
catgcaggaatgacnnnnnnnggatattttggagtcaaatatgactcaatactaatgcataacacatacatctgcttttgaatgatatggaatgtaacat |
514 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
14592733 |
catgcaagaatgacttttttt-gatattttggagtcaaatatgactcaatactaatgcacaacacatacatctgcttttgaatgatatgaaatgtaacat |
14592635 |
T |
|
| Q |
515 |
gcttcatattctt |
527 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
14592634 |
gcttcattttctt |
14592622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 16 - 521
Target Start/End: Original strand, 13308436 - 13308941
Alignment:
| Q |
16 |
cacatacaggagctccttgagtccgacaatggttgcagctttgatatgttgtcaaaattggttaaaaccttttttcattgacttcaaagatcttaatttg |
115 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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|
| T |
13308436 |
cacatataggagctccttgaatccgacaatggctgaagctttgatatgttgtcaaaattggctaaaaccttctttcattgacttcaaagatcttaatttg |
13308535 |
T |
|
| Q |
116 |
agtgaagagtatcagcttttagagaatctcgttggaggtaacttagtagt-tgtctatgaatttattgtgtatttgatattgagtaacaaattaatttat |
214 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13308536 |
agtgaagagtatcaggctttagagaatgtcgttggaggtaatttattagtgtgtctatgaatttattgtgtatttgatattgagtaacaaattaatttat |
13308635 |
T |
|
| Q |
215 |
tctcttttattgatttgaatgcattgtagaaattggacaagtgttaagtggttctggagttggtcttgctggtgtttcaccaccagcaactgggcctttt |
314 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13308636 |
tcccttatattgatttgaatgcattgtagaaatcggacaagtgttaagtggttctggagttggtcttgctggtgtttcaccaccagcaactgggcctttt |
13308735 |
T |
|
| Q |
315 |
gtttaattccactcaatggtatactatttattaactattcttactttctcatacttagagtatttgatttatgtaatactaattaagagtaatttaatgt |
414 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
13308736 |
gtttaattccactcaatggtatactgtttattaactattcttactttatcatacttagagtacttaatttatgtaatactaattaagagtaatttaatgt |
13308835 |
T |
|
| Q |
415 |
catgcaggaatgacnnnnnnnggatattttggagtcaaatatgactcaatactaatgcataacacatacatctgcttttgaatgatatggaatgtaacat |
514 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13308836 |
catgcaggaatgac-ttttttggatattttggagtcaaatatgactcaatactaatgcacaacacatgcatctgcttttgaatgatatggaatgtaacat |
13308934 |
T |
|
| Q |
515 |
gcttcat |
521 |
Q |
| |
|
||||||| |
|
|
| T |
13308935 |
gcttcat |
13308941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 1e-67; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 176 - 521
Target Start/End: Complemental strand, 21281677 - 21281328
Alignment:
| Q |
176 |
tttattgtgtatttgatattgagtaacaaattaatttatt-ctcttttattgatttgaatgcattgtagaaattggacaagtgttaagtggttctggagt |
274 |
Q |
| |
|
|||||| ||||||||||||||| ||| ||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||| | ||| |
|
|
| T |
21281677 |
tttattttgtatttgatattgaataataaattaatttatttctcttttattgatttgaacgcattgcagaaattggacaagtgttaagtggcttcaaagt |
21281578 |
T |
|
| Q |
275 |
tggtcttgctggtgtttcaccaccagcaactgggccttttgtttaattccactcaatggtatactatttattaactattcttactttctcatacttagag |
374 |
Q |
| |
|
||||||||| |||||| |||||||| ||| | | || ||||||||| ||||||||| ||||| ||| |||| |||| |||||||||||||||| || |
|
|
| T |
21281577 |
tggtcttgcaggtgttacaccaccaacaattaagatttctgtttaatttcactcaatgatatacaattcattatttatttttactttctcatacttgaag |
21281478 |
T |
|
| Q |
375 |
tatttgatttatgtaatactaattaagagtaatttaatgtcatgcaggaatgacnnnnnnnggatattttggagtcaaatatgactcaatactaatgcat |
474 |
Q |
| |
|
|| | ||| ||||||||||||| || ||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
21281477 |
tactgaattaatgtaatactaatcaaaagtaatttaatgtcatgcatgaattactttttttggatattttggagtcaaatatgactcaatactaatgtac |
21281378 |
T |
|
| Q |
475 |
aacacatacatctgcttttga---atgatatggaatgtaacatgcttcat |
521 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||| ||| |||||||| |
|
|
| T |
21281377 |
aacacatgactttgcttttgaatgatgatatggaatgcaacttgcttcat |
21281328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 22348081 - 22348190
Alignment:
| Q |
16 |
cacatacaggagctccttgagtccgacaatggttgcagctttgatatgttgtcaaaattggttaaaaccttttttcattgacttcaaagatcttaatttg |
115 |
Q |
| |
|
|||||| || ||||| ||||||||| ||||| | ||||||||| ||| |||||||||| | ||||| | |||| | |||||||||||||| |||||| |
|
|
| T |
22348081 |
cacatatagaagctcattgagtccggaaatggcggaagctttgatttgtactcaaaattggctgaaaccatctttcgtcgacttcaaagatctaaatttg |
22348180 |
T |
|
| Q |
116 |
agtgaagagt |
125 |
Q |
| |
|
|||||||||| |
|
|
| T |
22348181 |
agtgaagagt |
22348190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 21281794 - 21281730
Alignment:
| Q |
99 |
tcaaagatcttaatttgagtgaagagtatcagcttttagagaatctcgttggaggtaacttagta |
163 |
Q |
| |
|
|||||| | |||||||||||||||||||||| | ||||||||| ||||| |||||| |||||| |
|
|
| T |
21281794 |
tcaaagctattaatttgagtgaagagtatcaattgttagagaatgtcgttaaaggtaatttagta |
21281730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 376 - 527
Target Start/End: Original strand, 13786859 - 13787009
Alignment:
| Q |
376 |
atttgatttatgtaatactaattaagagtaatttaatgtcatgcaggaatgacnnnnnnnggatattttggagtcaaatatgactcaatactaatgcata |
475 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
13786859 |
attttatttatgtaatactaattaagagtaatttaatgtcatgcaggaatgactttttt-ggatattttggagtcaaatatgactcaatactaatgcaca |
13786957 |
T |
|
| Q |
476 |
acacatacatctgcttttgaatgatatggaatgtaacatgcttcatattctt |
527 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13786958 |
acacatgcatatgcttttgaatgatatggaatgtaacatgcttcattttctt |
13787009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 22598641 - 22598757
Alignment:
| Q |
16 |
cacatacaggagctccttgagtccgacaatggttgcagctttgatatgttgtcaaaattggttaaaaccttttttcattgacttcaaagatcttaatttg |
115 |
Q |
| |
|
|||||| |||||||| ||||||||| ||||| | ||||||||| ||| ||| |||||| | ||||| | |||| | |||||||||||||| |||||| |
|
|
| T |
22598641 |
cacatataggagctcattgagtccggaaatggcggaagctttgatttgtactcagaattggctgaaaccatctttcgtcgacttcaaagatctaaatttg |
22598740 |
T |
|
| Q |
116 |
agtgaagagtatcagct |
132 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
22598741 |
agtgaagagtatgagct |
22598757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 6837803 - 6837692
Alignment:
| Q |
16 |
cacatacaggagctccttgagtccgacaatggttgcagctttgatatgttgtcaaaattggttaaaaccttttttcattgacttcaaagatcttaatttg |
115 |
Q |
| |
|
|||||| |||||||| ||||||||| ||||| | ||||||||| ||| ||| |||||| | ||||| | ||| | |||||||||||||| |||||| |
|
|
| T |
6837803 |
cacatataggagctcattgagtccggaaatggcggaagctttgatttgtactcagaattggctgaaaccatcttttgtcgacttcaaagatctaaatttg |
6837704 |
T |
|
| Q |
116 |
agtgaagagtat |
127 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6837703 |
agtgaagagtat |
6837692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 306571 - 306510
Alignment:
| Q |
71 |
aattggttaaaaccttttttcattgacttcaaagatcttaatttgagtgaagagtatcagct |
132 |
Q |
| |
|
|||||||| ||||| | |||| | |||||||||||||| |||||||||||| ||||| |||| |
|
|
| T |
306571 |
aattggttgaaaccatctttcgtcgacttcaaagatctaaatttgagtgaaaagtatgagct |
306510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 16001086 - 16001122
Alignment:
| Q |
96 |
acttcaaagatcttaatttgagtgaagagtatcagct |
132 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
16001086 |
acttcaaagatctaaatttgagtgaagagtatgagct |
16001122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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